Clone Sequence Records
BO18505.3prime Sequence
790 bp (690 high quality bases) assembled on 2006-10-13
> BO18505.3prime
ATGGTCTAGAAAGCTTGCTAAGAACACGGAATTCTTGGCGATTATATAGT
CAATCTCGCTCGTCCAGGGATTCTTGAAGGCCCGCCACTCGCTCTGCAGC
TGAATGTAGCTGTTGTCCTTGCACCGGAAGCGGTAGACCTGAGTGGTCAC
CTTTTCCGGCACCTGCATCACCATCTTGTGAGACTCCATCAGCGCAGCGA
TGTCTTCGTTGTGGAAGTACTCGTAGAAGCTGGTGCCGAGGATCTCCTGA
GGCAGGAAACCAATCACGAGGGTGGCACGCTGGTCTATGAACAGGAACTT
GCCCTCGCCGGAGTGGCGCGAGATGAAGAGCACGTGCCGTATGTTCGGGT
GATTGTCCAGCGAGGCGGGTACTGTGGAGTTGCGAACGTTGGGCGGAATG
CGACCAATTGCCACAAGGCAGGATAGATTCGTTGTCTGCTCGTCGCTGTC
GGCGTCCTGGTCCTCGTCCTTGATGGGTGTCCAGGACTTGAGGTAGCCCG
TGCACTGGATAACCCGGTACTTGTGGCCCGTAGTCAGTCTGGACTTGCGC
TTCGTGGAGCTCCGGGAGCTGGAGGACGTATCGGACTCCTCCTTGATCTG
GTTGTTGCTGGCAGTGCGCAGCTTCATGCGGCAGAAGAAGGAGCGCCGGG
CACCCGGACACAGGCGGCACAAGCTCTGTGGAACGTCGGTCTTAACGGGC
AACATGGTCTTCGCATCGATAAGCCTTTCCCTGGGACACTGTTCCAGTGA
GGATAGCTGCTCCTTAACCTTGCCTATGTCCTTCGGATGC
BO18505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8727-PA | 1242 | cyc-RA | 468..1239 | 790..19 | 3835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1625 | CG8727-RA | 632..1403 | 790..19 | 3845 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19814307..19814736 | 278..707 | 2135 | 99.8 | Plus |
| 3L | 28110227 | 3L | 19813992..19814251 | 19..278 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 19814807..19814889 | 708..790 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:05:17 has no hits.
BO18505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:51 Download gff for
BO18505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8727-PA | 468..1242 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:40 Download gff for
BO18505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 632..1407 | 14..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:23 Download gff for
BO18505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 632..1407 | 14..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:23 Download gff for
BO18505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19813988..19814250 | 14..277 | 99 | <- | Plus |
| 3L | 19814307..19814736 | 278..707 | 99 | <- | Plus |
| 3L | 19814807..19814889 | 708..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:40 Download gff for
BO18505.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19807088..19807350 | 14..277 | 99 | <- | Plus |
| arm_3L | 19807407..19807836 | 278..707 | 99 | <- | Plus |
| arm_3L | 19807907..19807989 | 708..790 | 100 | | Plus |
BO18505.5prime Sequence
755 bp (717 high quality bases) assembled on 2006-10-13
> BO18505.5prime
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCCAGATCAAGGAGGAGTCCGATACGTC
CTCCAGCTCCCGGAGCTCCCCGAAGCGCAAGTCCAGACTGACTACGGGCC
ACAAG
BO18505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8727-PA | 1242 | cyc-RA | 1..658 | 17..674 | 3290 | 100 | Plus |
| CG8727-PA | 1242 | cyc-RA | 657..738 | 674..755 | 385 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1625 | CG8727-RA | 165..902 | 17..755 | 3655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19814807..19815261 | 566..112 | 2275 | 100 | Minus |
| 3L | 28110227 | 3L | 19814549..19814736 | 755..567 | 880 | 98.9 | Minus |
| 3L | 28110227 | 3L | 19815420..19815496 | 112..36 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:29:47 has no hits.
BO18505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:51 Download gff for
BO18505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8727-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:12 Download gff for
BO18505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..902 | 13..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:50 Download gff for
BO18505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..902 | 13..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:50 Download gff for
BO18505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19814549..19814736 | 567..755 | 98 | <- | Minus |
| 3L | 19814807..19815261 | 112..566 | 100 | <- | Minus |
| 3L | 19815421..19815495 | 37..111 | 100 | <- | Minus |
| 3L | 19815755..19815776 | 13..36 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:12 Download gff for
BO18505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19807649..19807836 | 567..755 | 98 | <- | Minus |
| arm_3L | 19807907..19808361 | 112..566 | 100 | <- | Minus |
| arm_3L | 19808521..19808595 | 37..111 | 100 | <- | Minus |
| arm_3L | 19808855..19808876 | 13..36 | 91 | | Minus |
BO18505.complete Sequence
1273 bp assembled on 2006-10-11
GenBank Submission: FJ634442
> BO18505.complete
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCC
TCCAGCTCCCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCA
CAAGTACCGGGTTATCCAGTGCACGGGCTACCTCAAGTCCTGGACACCCA
TCAAGGACGAGGACCAGGACGCCGACAGCGACGAGCAGACAACGAATCTA
TCCTGCCTTGTGGCAATTGGTCGCATTCCGCCCAACGTTCGCAACTCCAC
AGTACCCGCCTCGCTGGACAATCACCCGAACATACGGCACGTGCTCTTCA
TCTCGCGCCACTCCGGCGAGGGCAAGTTCCTGTTCATAGACCAGCGTGCC
ACCCTCGTGATTGGTTTCCTGCCTCAGGAGATCCTCGGCACCAGCTTCTA
CGAGTACTTCCACAACGAAGACATCGCTGCGCTGATGGAGTCTCACAAGA
TGGTGATGCAGGTGCCGGAAAAGGTGACCACTCAGGTCTACCGCTTCCGG
TGCAAGGACAACAGCTACATTCAGCTGCAGAGCGAGTGGCGGGCCTTCAA
GAATCCCTGGACGAGCGAGATTGACTATATAATCGCCAAGAATTCCGTGT
TCTTAGCAAGCTTTCTAGACCAT
BO18505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1242 | CG8727-PA | 1..1239 | 17..1255 | 6180 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1625 | CG8727-RA | 165..1403 | 17..1255 | 6180 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19814807..19815261 | 566..112 | 2275 | 100 | Minus |
| 3L | 28110227 | 3L | 19814307..19814736 | 996..567 | 2135 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19813992..19814251 | 1255..996 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 19815420..19815496 | 112..36 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:59 has no hits.
BO18505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:09 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 1..1242 | 17..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:51 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1407 | 13..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:10 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 165..1403 | 17..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:09 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1407 | 13..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:06 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 165..1403 | 17..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:06 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19813990..19814250 | 997..1257 | 99 | <- | Minus |
| 3L | 19814307..19814736 | 567..996 | 99 | <- | Minus |
| 3L | 19814807..19815261 | 112..566 | 100 | <- | Minus |
| 3L | 19815421..19815495 | 37..111 | 100 | <- | Minus |
| 3L | 19815755..19815774 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:10 Download gff for
BO18505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19807090..19807350 | 997..1257 | 99 | <- | Minus |
| arm_3L | 19807407..19807836 | 567..996 | 99 | <- | Minus |
| arm_3L | 19807907..19808361 | 112..566 | 100 | <- | Minus |
| arm_3L | 19808521..19808595 | 37..111 | 100 | <- | Minus |
| arm_3L | 19808855..19808874 | 17..36 | 100 | | Minus |
BO18505.pep Sequence
Translation from 16 to 1273
> BO18505.pep
MEVQEFCENMEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYI
NELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPFNGSDYRPS
FLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQ
SWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLC
PGARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVI
QCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIPPNVRNSTVPASL
DNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHN
EDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTS
EIDYIIAKNSVFLASFLDH
BO18505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-PA | 413 | CG8727-PA | 1..413 | 1..413 | 2150 | 100 | Plus |
| tgo-PB | 642 | CG11987-PB | 4..384 | 24..410 | 765 | 42.3 | Plus |
| tgo-PA | 642 | CG11987-PA | 4..384 | 24..410 | 765 | 42.3 | Plus |
| Clk-PA | 1023 | CG7391-PA | 1..362 | 13..411 | 323 | 25.7 | Plus |
| Clk-PD | 1027 | CG7391-PD | 2..366 | 15..411 | 316 | 25.9 | Plus |
