Clone BO18510 Report

Search the DGRC for BO18510

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:10
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18510.pep: Imported from assembly
Sequenced Size:835

Clone Sequence Records

BO18510.5prime Sequence

639 bp (535 high quality bases) assembled on 2006-10-13

> BO18510.5prime
GAAGTTATCAGTCGACATGGAAGGTGCGATGTGCATCCCGCTACTGTTGT
TGGCCATTGGGTTCTCCTCCGTTATTTCAATTTCCGGTCAACCGGAGGGC
AGAATAATTAATGGCACTACGGTAGATATTGCCCGTCATCCATATCTAGT
CTCCCTTCGCTATCGCCGGGATAATGAGTCCAGCTATATGCACGAATGTG
CCGGTGTCATCATCTCGGAACAGGCATTGATCACCAGTGCTCAGTGCCTC
TATGGCTTGCCCGAGGAAACTAAACTTGTGGCTGTGGCCGGAGCAAACAC
CCGCAATGGAACCGATGGATTTATTTACCCAGTAGCCAATTGGACCCATC
ATCCGAACTACGATCCCGTGACAGTTGACAATGATATAGGTGTCCTCCTT
CTGGACACAACCCTCGACCTCACGCTCCTCGGAATAAGCTCAATTGGTAT
CCGCCCGGAGCGTCCTGCAGTGGGTAGACTTGCCACTGTAGCCGGATGGG
GCTACCGGGAGGAGTGGGGCCCCTCCAGCTACAAACTGGAGCAGACCGAA
GTTCCAGTGGTTAGCTCTGAACAGTGCACACAAATCTACGGAGCTGGCGA
GGTTACCGAGCGGATGATTTGCGCGGGATTCGTAATTCA

BO18510.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12388-PA 792 kappaTry-RA 1..606 29..634 3005 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
kappaTry-RC 937 CG12388-RC 38..660 17..639 3085 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11338074..11338696 639..17 3085 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 18:52:52 has no hits.

BO18510.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for BO18510.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12388-PA 1..610 29..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:58:59 Download gff for BO18510.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RC 35..659 12..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:19 Download gff for BO18510.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RC 35..659 12..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:22:19 Download gff for BO18510.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11338075..11338699 12..638 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:58:59 Download gff for BO18510.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7225580..7226204 12..638 99   Minus

BO18510.complete Sequence

835 bp assembled on 2008-08-15

GenBank Submission: FJ634443

> BO18510.complete
GAAGTTATCAGTCGACATGGAAGGTGCGATGTGCATCCCGCTACTGTTGT
TGGCCATTGGGTTCTCCTCCGTTATTTCAATTTCCGGTCAACCGGAGGGC
AGAATAATTAATGGCACTACGGTAGATATTGCCCGTCATCCATATCTAGT
CTCCCTTCGCTATCGCCGGGATAATGAGTCCAGCTATATGCACGAATGTG
CCGGTGTCATCATCTCGGAACAGGCATTGATCACCAGTGCTCAGTGCCTC
TATGGCTTGCCCGAGGAAACTAAACTTGTGGCTGTGGCCGGAGCAAACAC
CCGCAATGGAACCGATGGATTTATTTACCCAGTAGCCAATTGGACCCATC
ATCCGAACTACGATCCCGTGACAGTTGACAATGATATAGGTGTCCTCCTT
CTGGACACAACCCTCGACCTCACGCTCCTCGGAATAAGCTCAATTGGTAT
CCGCCCGGAGCGTCCTGCAGTGGGTAGACTTGCCACTGTAGCCGGATGGG
GCTACCGGGAGGAGTGGGGCCCCTCCAGCTACAAACTGGAGCAGACCGAA
GTTCCAGTGGTTAGCTCTGAGCAGTGCACACAAATCTACGGAGCTGGCGA
GGTTACCGAGCGGATGATTTGCGCGGGATTTGTAGTTCAAGGAGGCAGTG
ATGCCTGCCAAGGCGACACCGGTGGCCCCCTGGTCATCGATGGTCAGCTG
GTGGGTCTGGTGTCCTGGGGACGCGGATGTGCCCGACCCAACTACCCCAC
CGTCTACTGCTACGTGGCCAGCTTTGTGGATTGGATCGAGGAAACCATAG
CAGCTGCTGGAGTGCAAGCAAGCTTTCTAGACCAT

BO18510.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
kappaTry-RC 792 CG12388-PC 1..789 29..817 3930 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
kappaTry-RC 937 CG12388-RC 38..838 17..817 3990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11337896..11338696 817..17 3990 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 07:10:19 has no hits.

BO18510.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:51 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RA 1..792 29..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:35 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RC 38..838 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:05 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RA 1..789 29..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:47 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
kappaTry-RC 38..838 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:47 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11337894..11338696 17..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:35 Download gff for BO18510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7225399..7226201 17..819 99   Minus

BO18510.pep Sequence

Translation from 16 to 835

> BO18510.pep
MEGAMCIPLLLLAIGFSSVISISGQPEGRIINGTTVDIARHPYLVSLRYR
RDNESSYMHECAGVIISEQALITSAQCLYGLPEETKLVAVAGANTRNGTD
GFIYPVANWTHHPNYDPVTVDNDIGVLLLDTTLDLTLLGISSIGIRPERP
AVGRLATVAGWGYREEWGPSSYKLEQTEVPVVSSEQCTQIYGAGEVTERM
ICAGFVVQGGSDACQGDTGGPLVIDGQLVGLVSWGRGCARPNYPTVYCYV
ASFVDWIEETIAAAGVQASFLDH

BO18510.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
kappaTry-PC 263 CG12388-PC 1..263 5..267 1389 100 Plus
etaTry-PA 262 CG12386-PA 6..254 9..257 527 43.8 Plus
CG7829-PA 253 CG7829-PA 9..249 11..261 464 39.4 Plus
zetaTry-PA 280 CG12387-PA 35..278 26..262 456 40.8 Plus
lambdaTry-PA 272 CG12350-PA 33..261 27..262 393 38.2 Plus