Clone Sequence Records
BO18510.5prime Sequence
639 bp (535 high quality bases) assembled on 2006-10-13
> BO18510.5prime
GAAGTTATCAGTCGACATGGAAGGTGCGATGTGCATCCCGCTACTGTTGT
TGGCCATTGGGTTCTCCTCCGTTATTTCAATTTCCGGTCAACCGGAGGGC
AGAATAATTAATGGCACTACGGTAGATATTGCCCGTCATCCATATCTAGT
CTCCCTTCGCTATCGCCGGGATAATGAGTCCAGCTATATGCACGAATGTG
CCGGTGTCATCATCTCGGAACAGGCATTGATCACCAGTGCTCAGTGCCTC
TATGGCTTGCCCGAGGAAACTAAACTTGTGGCTGTGGCCGGAGCAAACAC
CCGCAATGGAACCGATGGATTTATTTACCCAGTAGCCAATTGGACCCATC
ATCCGAACTACGATCCCGTGACAGTTGACAATGATATAGGTGTCCTCCTT
CTGGACACAACCCTCGACCTCACGCTCCTCGGAATAAGCTCAATTGGTAT
CCGCCCGGAGCGTCCTGCAGTGGGTAGACTTGCCACTGTAGCCGGATGGG
GCTACCGGGAGGAGTGGGGCCCCTCCAGCTACAAACTGGAGCAGACCGAA
GTTCCAGTGGTTAGCTCTGAACAGTGCACACAAATCTACGGAGCTGGCGA
GGTTACCGAGCGGATGATTTGCGCGGGATTCGTAATTCA
BO18510.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12388-PA | 792 | kappaTry-RA | 1..606 | 29..634 | 3005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaTry-RC | 937 | CG12388-RC | 38..660 | 17..639 | 3085 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11338074..11338696 | 639..17 | 3085 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:52:52 has no hits.
BO18510.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for
BO18510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12388-PA | 1..610 | 29..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:58:59 Download gff for
BO18510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RC | 35..659 | 12..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:19 Download gff for
BO18510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RC | 35..659 | 12..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:22:19 Download gff for
BO18510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11338075..11338699 | 12..638 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:58:59 Download gff for
BO18510.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7225580..7226204 | 12..638 | 99 | | Minus |
BO18510.complete Sequence
835 bp assembled on 2008-08-15
GenBank Submission: FJ634443
> BO18510.complete
GAAGTTATCAGTCGACATGGAAGGTGCGATGTGCATCCCGCTACTGTTGT
TGGCCATTGGGTTCTCCTCCGTTATTTCAATTTCCGGTCAACCGGAGGGC
AGAATAATTAATGGCACTACGGTAGATATTGCCCGTCATCCATATCTAGT
CTCCCTTCGCTATCGCCGGGATAATGAGTCCAGCTATATGCACGAATGTG
CCGGTGTCATCATCTCGGAACAGGCATTGATCACCAGTGCTCAGTGCCTC
TATGGCTTGCCCGAGGAAACTAAACTTGTGGCTGTGGCCGGAGCAAACAC
CCGCAATGGAACCGATGGATTTATTTACCCAGTAGCCAATTGGACCCATC
ATCCGAACTACGATCCCGTGACAGTTGACAATGATATAGGTGTCCTCCTT
CTGGACACAACCCTCGACCTCACGCTCCTCGGAATAAGCTCAATTGGTAT
CCGCCCGGAGCGTCCTGCAGTGGGTAGACTTGCCACTGTAGCCGGATGGG
GCTACCGGGAGGAGTGGGGCCCCTCCAGCTACAAACTGGAGCAGACCGAA
GTTCCAGTGGTTAGCTCTGAGCAGTGCACACAAATCTACGGAGCTGGCGA
GGTTACCGAGCGGATGATTTGCGCGGGATTTGTAGTTCAAGGAGGCAGTG
ATGCCTGCCAAGGCGACACCGGTGGCCCCCTGGTCATCGATGGTCAGCTG
GTGGGTCTGGTGTCCTGGGGACGCGGATGTGCCCGACCCAACTACCCCAC
CGTCTACTGCTACGTGGCCAGCTTTGTGGATTGGATCGAGGAAACCATAG
CAGCTGCTGGAGTGCAAGCAAGCTTTCTAGACCAT
BO18510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaTry-RC | 792 | CG12388-PC | 1..789 | 29..817 | 3930 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaTry-RC | 937 | CG12388-RC | 38..838 | 17..817 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11337896..11338696 | 817..17 | 3990 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:10:19 has no hits.
BO18510.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:51 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RA | 1..792 | 29..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:35 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RC | 38..838 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:05 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RA | 1..789 | 29..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:47 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaTry-RC | 38..838 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:47 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11337894..11338696 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:35 Download gff for
BO18510.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7225399..7226201 | 17..819 | 99 | | Minus |
BO18510.pep Sequence
Translation from 16 to 835
> BO18510.pep
MEGAMCIPLLLLAIGFSSVISISGQPEGRIINGTTVDIARHPYLVSLRYR
RDNESSYMHECAGVIISEQALITSAQCLYGLPEETKLVAVAGANTRNGTD
GFIYPVANWTHHPNYDPVTVDNDIGVLLLDTTLDLTLLGISSIGIRPERP
AVGRLATVAGWGYREEWGPSSYKLEQTEVPVVSSEQCTQIYGAGEVTERM
ICAGFVVQGGSDACQGDTGGPLVIDGQLVGLVSWGRGCARPNYPTVYCYV
ASFVDWIEETIAAAGVQASFLDH
BO18510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaTry-PC | 263 | CG12388-PC | 1..263 | 5..267 | 1389 | 100 | Plus |
etaTry-PA | 262 | CG12386-PA | 6..254 | 9..257 | 527 | 43.8 | Plus |
CG7829-PA | 253 | CG7829-PA | 9..249 | 11..261 | 464 | 39.4 | Plus |
zetaTry-PA | 280 | CG12387-PA | 35..278 | 26..262 | 456 | 40.8 | Plus |
lambdaTry-PA | 272 | CG12350-PA | 33..261 | 27..262 | 393 | 38.2 | Plus |