Clone Sequence Records
BO18511.3prime Sequence
533 bp (533 high quality bases) assembled on 2006-10-13
> BO18511.3prime
ATGGTCTAGAAAGCTTGCTTTGGGTGCGAACAAGATCTTGCCGCGCATGT
GATCGGGCAGCGGCACGGTTCCGGGACAGGGCACCTGGCCGGGGATCTCG
CAGATGCAGTGCCTGCCGCATCCGTAGCCAAAGTTGGCCGGATTGTCCTT
GCTCTCCTTTAGGCGCTCCTCTGCGTCCAGTTGCTCCCGGGTTTTGCCCA
CCACCTTAACCAGGTGATCGATGATGTCGTTCCGATTCCGACTGTCCAAA
TCTATAAGCATATCGCGTCCATCGTCGAAGTAGCAGCGCACAAACGGCGA
GGGCGTCATGTTCTTCAGCGTGAGCACCTGGACCTCGGGATTCTTGAACT
GGATCTGCGGTATGTTCCAGAAAACAAAGTCCCGAGCGCCCGCGTGATGA
GCACCATATGTGTTGTAGTTCACGCTGAAAATGCGCACCTTGTCCTTCAG
CACCAGCTTACCGGCATTCAGATACTTCAGGGTGCGGCGGATGGGCTCAC
GGCCCTTCATGAACGGCATGTCGACTGATAACT
BO18511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14413-PA | 504 | mRpS25-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..590 | 519..19 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 187..383 | 985 | 100 | Plus |
X | 23542271 | X | 14582187..14582356 | 19..188 | 850 | 100 | Plus |
X | 23542271 | X | 14582756..14582893 | 382..519 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:35:28 has no hits.
BO18511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for
BO18511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14413-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:57 Download gff for
BO18511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..590 | 19..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:21 Download gff for
BO18511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..590 | 19..531 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:21 Download gff for
BO18511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582757..14582906 | 383..531 | 96 | | Plus |
X | 14582187..14582355 | 19..187 | 100 | <- | Plus |
X | 14582499..14582693 | 188..382 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:57 Download gff for
BO18511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476532..14476726 | 188..382 | 100 | <- | Plus |
arm_X | 14476220..14476388 | 19..187 | 100 | <- | Plus |
arm_X | 14476790..14476939 | 383..531 | 96 | | Plus |
BO18511.5prime Sequence
533 bp (533 high quality bases) assembled on 2006-10-13
> BO18511.5prime
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAAGCAAGCTTTCTAGACC
BO18511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14413-PA | 504 | mRpS25-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..590 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 349..153 | 985 | 100 | Minus |
X | 23542271 | X | 14582187..14582356 | 517..348 | 850 | 100 | Minus |
X | 23542271 | X | 14582756..14582893 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:11 has no hits.
BO18511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for
BO18511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14413-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:52 Download gff for
BO18511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..590 | 5..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:57 Download gff for
BO18511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..590 | 5..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:57 Download gff for
BO18511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582187..14582355 | 349..517 | 100 | <- | Minus |
X | 14582499..14582693 | 154..348 | 100 | <- | Minus |
X | 14582757..14582906 | 5..153 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:52 Download gff for
BO18511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476220..14476388 | 349..517 | 100 | <- | Minus |
arm_X | 14476532..14476726 | 154..348 | 100 | <- | Minus |
arm_X | 14476790..14476939 | 5..153 | 96 | | Minus |
BO18511.complete Sequence
535 bp assembled on 2006-10-11
GenBank Submission: FJ634444
> BO18511.complete
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAAGCAAGCTTTCTAGACCAT
BO18511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 504 | CG14413-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..590 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 349..153 | 985 | 100 | Minus |
X | 23542271 | X | 14582187..14582356 | 517..348 | 850 | 100 | Minus |
X | 23542271 | X | 14582756..14582893 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:51 has no hits.
BO18511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:10 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:52 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:47 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 90..590 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:10 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:50 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 90..590 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:50 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582499..14582693 | 154..348 | 100 | <- | Minus |
X | 14582757..14582893 | 17..153 | 100 | | Minus |
X | 14582185..14582355 | 349..519 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:47 Download gff for
BO18511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476790..14476926 | 17..153 | 100 | | Minus |
arm_X | 14476218..14476388 | 349..519 | 98 | <- | Minus |
arm_X | 14476532..14476726 | 154..348 | 100 | <- | Minus |
BO18511.pep Sequence
Translation from 16 to 535
> BO18511.pep
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPKASFLDH
BO18511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-PA | 167 | CG14413-PA | 1..167 | 1..167 | 909 | 100 | Plus |