Clone BO18511 Report

Search the DGRC for BO18511

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS25-RA
Protein status:BO18511.pep: validated full length
Sequenced Size:535

Clone Sequence Records

BO18511.3prime Sequence

533 bp (533 high quality bases) assembled on 2006-10-13

> BO18511.3prime
ATGGTCTAGAAAGCTTGCTTTGGGTGCGAACAAGATCTTGCCGCGCATGT
GATCGGGCAGCGGCACGGTTCCGGGACAGGGCACCTGGCCGGGGATCTCG
CAGATGCAGTGCCTGCCGCATCCGTAGCCAAAGTTGGCCGGATTGTCCTT
GCTCTCCTTTAGGCGCTCCTCTGCGTCCAGTTGCTCCCGGGTTTTGCCCA
CCACCTTAACCAGGTGATCGATGATGTCGTTCCGATTCCGACTGTCCAAA
TCTATAAGCATATCGCGTCCATCGTCGAAGTAGCAGCGCACAAACGGCGA
GGGCGTCATGTTCTTCAGCGTGAGCACCTGGACCTCGGGATTCTTGAACT
GGATCTGCGGTATGTTCCAGAAAACAAAGTCCCGAGCGCCCGCGTGATGA
GCACCATATGTGTTGTAGTTCACGCTGAAAATGCGCACCTTGTCCTTCAG
CACCAGCTTACCGGCATTCAGATACTTCAGGGTGCGGCGGATGGGCTCAC
GGCCCTTCATGAACGGCATGTCGACTGATAACT

BO18511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14413-PA 504 mRpS25-RA 1..501 519..19 2505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..590 519..19 2505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 187..383 985 100 Plus
X 23542271 X 14582187..14582356 19..188 850 100 Plus
X 23542271 X 14582756..14582893 382..519 690 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:35:28 has no hits.

BO18511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for BO18511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14413-PA 1..504 18..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:57 Download gff for BO18511.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..590 19..531 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:21 Download gff for BO18511.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..590 19..531 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:21 Download gff for BO18511.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14582757..14582906 383..531 96   Plus
X 14582187..14582355 19..187 100 <- Plus
X 14582499..14582693 188..382 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:57 Download gff for BO18511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476532..14476726 188..382 100 <- Plus
arm_X 14476220..14476388 19..187 100 <- Plus
arm_X 14476790..14476939 383..531 96   Plus

BO18511.5prime Sequence

533 bp (533 high quality bases) assembled on 2006-10-13

> BO18511.5prime
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAAGCAAGCTTTCTAGACC

BO18511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14413-PA 504 mRpS25-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..590 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 349..153 985 100 Minus
X 23542271 X 14582187..14582356 517..348 850 100 Minus
X 23542271 X 14582756..14582893 154..17 690 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:58:11 has no hits.

BO18511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:54 Download gff for BO18511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14413-PA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:52 Download gff for BO18511.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..590 5..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:57 Download gff for BO18511.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..590 5..517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:57 Download gff for BO18511.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14582187..14582355 349..517 100 <- Minus
X 14582499..14582693 154..348 100 <- Minus
X 14582757..14582906 5..153 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:52 Download gff for BO18511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476220..14476388 349..517 100 <- Minus
arm_X 14476532..14476726 154..348 100 <- Minus
arm_X 14476790..14476939 5..153 96   Minus

BO18511.complete Sequence

535 bp assembled on 2006-10-11

GenBank Submission: FJ634444

> BO18511.complete
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAAGCAAGCTTTCTAGACCAT

BO18511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 504 CG14413-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..590 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 349..153 985 100 Minus
X 23542271 X 14582187..14582356 517..348 850 100 Minus
X 23542271 X 14582756..14582893 154..17 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:28:51 has no hits.

BO18511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:10 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:52 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:47 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 90..590 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:10 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:50 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 90..590 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:50 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
X 14582499..14582693 154..348 100 <- Minus
X 14582757..14582893 17..153 100   Minus
X 14582185..14582355 349..519 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:47 Download gff for BO18511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476790..14476926 17..153 100   Minus
arm_X 14476218..14476388 349..519 98 <- Minus
arm_X 14476532..14476726 154..348 100 <- Minus

BO18511.pep Sequence

Translation from 16 to 535

> BO18511.pep
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPKASFLDH

BO18511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-PA 167 CG14413-PA 1..167 1..167 909 100 Plus