Clone Sequence Records
BO18514.3prime Sequence
773 bp (707 high quality bases) assembled on 2006-10-13
> BO18514.3prime
ATGGTCTAGAAAGCTTGCCTCTTCCATTTCAGATTTGGCAAGTTTCTCAG
ATATGTTCATTTGTTTTACGAGAGTAAAGACGGAGAACGAAAATTTTGTG
ACACTGATGTTAGTTCCCACAGATATTGGAAACACGTTCATAGCCATGAA
GGTTATAGGCTGCTGCAGTTTCTGTAGGAAGTACATGAGTGTCTTTTGGT
ATCGTTTCTCCTCATCAATCCAGTTTGACTGAAACAGGGCATCGGCCAGC
TTGTAGCAGTCTTCTGTGAGATAATTGCACAATATGCAGAAGGGAGTCGT
CTCTAGAAGCACTGCGGCCATAAACGAGAGCGCTGCGATGGCCGATCCCA
AGTTGGCGAACAGGACAATGTTAATTAGGGTAAAGCCCAGCACCAACCCC
ACAACCAAGAATTGCACGAAGATGGTACCAGAAATAACAGGACGCAGGCA
GTCAACAAATCGCAAAATTACTTTGTGATCTTGTATGCACTGAACCAATC
GTTCATATTTCTGCTCCTGGCTTTCATAAGGATAAGTTCCCAAACGTCGA
AGGCGCTCCGCGAAGATCGACATGTGGGCACGCAGGACCAAAACGAAATT
GACTGGGTAGCAATCAACGCAAACGTCCTGGAAGCAGGCGCCAGCCATGG
CGAAGTATTCCAGACCGGCCTGCAGAGCTAGATGCAGAGTGCTAGATCGC
CAGTCCAGAAAAGGGTAGTAATTTTGGTACGGTGGCCTTCCAATGAAGAT
CGCCGACAGAAACGTATTAATGG
BO18514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17250-PA | 1221 | Or42a-RA | 468..1218 | 769..19 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-RA | 1280 | CG17250-RA | 468..1222 | 773..19 | 3760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5791643..5792003 | 101..461 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 5792188..5792500 | 461..773 | 1550 | 99.7 | Plus |
| 2R | 25286936 | 2R | 5791499..5791582 | 19..102 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:54:37 has no hits.
BO18514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:58 Download gff for
BO18514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17250-PA | 464..1221 | 16..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:26 Download gff for
BO18514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 468..1226 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:54 Download gff for
BO18514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 468..1226 | 15..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:54 Download gff for
BO18514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5791494..5791582 | 15..102 | 97 | <- | Plus |
| 2R | 5791645..5792002 | 103..460 | 100 | <- | Plus |
| 2R | 5792188..5792500 | 461..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:26 Download gff for
BO18514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1678999..1679087 | 15..102 | 97 | <- | Plus |
| arm_2R | 1679150..1679507 | 103..460 | 100 | <- | Plus |
| arm_2R | 1679693..1680005 | 461..773 | 99 | | Plus |
BO18514.5prime Sequence
924 bp (731 high quality bases) assembled on 2006-10-13
> BO18514.5prime
GAAGTTATCAGTCGACATGGATCTGCGAAGGTGGTTTCCGACCTTGTACA
CCCAGTCGAAGGATTCGCCAGTTCGCTCCCGAGACGCGACCCTGTACCTC
CTACGCTGCGTCTTCTTAATGGGCGTCCGCAAGCCACCTGCCAAGTTTTT
CGTGGCCTACGTGCTCTGGTCCTTCGCACTGAATTTCTGCTCAACATTTT
ATCAGCCAATTGGCTTTCTCACAGGCTATATAAGCCATTTATCAGAGTTC
TCCCCGGGAGAGTTTCTAACTTCGCTGCAGGTGGCCTTTAATGCTTGGTC
CTGCTCTACAAAAGTCCTGATAGTGTGGGCACTAGTTAAGCGCTTTGACG
AGGCTAATAACCTTCTCGACGAGATGGATAGGCGTATCACAGACCCCGGA
GAGCGTCTTCAGATTCATCGCGCTGTCTCCCTCAGTAACCGTATATTCTT
CTTTTTCATGGCAGTCTACATGGTTTATGCCACTAATACGTTTCTGTCGG
CGATCTTCATTGGAAGGCCACCGTACCAAAATTACTACCCTTTTCTGGAC
TGGCGATCTAGCACTCTGCATCTAGCTCTGCAGGCCGGTCTGGAATACTT
CGCCATGGCTGGCGCCTGCTTCCAGGACGTTTGCGTTGATTGCTACCCAG
TCAATTTCGTTTTGGTCCTGCGTGCCCACATGTCGATCTTCGCGGAGCGC
CTTCGACGTTTGGGAACTTATCCTTATGAAAGCCAGGAGCAGAAATATGA
ACGATTGGTTCAGTGCATACAAGATCACAAAGTAATTTTTGCGATTTGTT
GACTGCCTGCGTCCTGTTATTTCTGGGACCATCTTCCTGCAATTCTTTGT
TTGTGGGGTTGGTGCTGGGGCTTTACCCTAATTAAATTTGCCCTGTTCGC
CAACTTGGGATCGGGCCCTCCGCA
BO18514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17250-PA | 1221 | Or42a-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
| CG17250-PA | 1221 | Or42a-RA | 770..830 | 787..847 | 255 | 96.7 | Plus |
| CG17250-PA | 1221 | Or42a-RA | 849..895 | 868..914 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-RA | 1280 | CG17250-RA | 5..899 | 17..914 | 4325 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5792191..5792963 | 789..17 | 3865 | 100 | Minus |
| 2R | 25286936 | 2R | 5791884..5792003 | 914..793 | 420 | 93.4 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:57:05 has no hits.
BO18514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:58 Download gff for
BO18514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17250-PA | 1..902 | 17..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:17 Download gff for
BO18514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 2..906 | 15..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:47 Download gff for
BO18514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 2..906 | 15..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:47 Download gff for
BO18514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5791877..5792002 | 794..923 | 91 | <- | Minus |
| 2R | 5792188..5792971 | 9..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:17 Download gff for
BO18514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1679382..1679507 | 794..923 | 91 | <- | Minus |
| arm_2R | 1679693..1680476 | 9..793 | 99 | | Minus |
BO18514.complete Sequence
1252 bp assembled on 2006-10-11
GenBank Submission: FJ634445
> BO18514.complete
GAAGTTATCAGTCGACATGGATCTGCGAAGGTGGTTTCCGACCTTGTACA
CCCAGTCGAAGGATTCGCCAGTTCGCTCCCGAGACGCGACCCTGTACCTC
CTACGCTGCGTCTTCTTAATGGGCGTCCGCAAGCCACCTGCCAAGTTTTT
CGTGGCCTACGTGCTCTGGTCCTTCGCACTGAATTTCTGCTCAACATTTT
ATCAGCCAATTGGCTTTCTCACAGGCTATATAAGCCATTTATCAGAGTTC
TCCCCGGGAGAGTTTCTAACTTCGCTGCAGGTGGCCTTTAATGCTTGGTC
CTGCTCTACAAAAGTCCTGATAGTGTGGGCACTAGTTAAGCGCTTTGACG
AGGCTAATAACCTTCTCGACGAGATGGATAGGCGTATCACAGACCCCGGA
GAGCGTCTTCAGATTCATCGCGCTGTCTCCCTCAGTAACCGTATATTCTT
CTTTTTCATGGCAGTCTACATGGTTTATGCCACTAATACGTTTCTGTCGG
CGATCTTCATTGGAAGGCCACCGTACCAAAATTACTACCCTTTTCTGGAC
TGGCGATCTAGCACTCTGCATCTAGCTCTGCAGGCCGGTCTGGAATACTT
CGCCATGGCTGGCGCCTGCTTCCAGGACGTTTGCGTTGATTGCTACCCAG
TCAATTTCGTTTTGGTCCTGCGTGCCCACATGTCGATCTTCGCGGAGCGC
CTTCGACGTTTGGGAACTTATCCTTATGAAAGCCAGGAGCAGAAATATGA
ACGATTGGTTCAGTGCATACAAGATCACAAAGTAATTTTGCGATTTGTTG
ACTGCCTGCGTCCTGTTATTTCTGGTACCATCTTCGTGCAATTCTTGGTT
GTGGGGTTGGTGCTGGGCTTTACCCTAATTAACATTGTCCTGTTCGCCAA
CTTGGGATCGGCCATCGCAGCGCTCTCGTTTATGGCCGCAGTGCTTCTAG
AGACGACTCCCTTCTGCATATTGTGCAATTATCTCACAGAAGACTGCTAC
AAGCTGGCCGATGCCCTGTTTCAGTCAAACTGGATTGATGAGGAGAAACG
ATACCAAAAGACACTCATGTACTTCCTACAGAAACTGCAGCAGCCTATAA
CCTTCATGGCTATGAACGTGTTTCCAATATCTGTGGGAACTAACATCAGT
GTCACAAAATTTTCGTTCTCCGTCTTTACTCTCGTAAAACAAATGAACAT
ATCTGAGAAACTTGCCAAATCTGAAATGGAAGAGGCAAGCTTTCTAGACC
AT
BO18514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-RA | 1221 | CG17250-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-RA | 1280 | CG17250-RA | 5..1222 | 17..1234 | 6090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5792188..5792963 | 792..17 | 3880 | 100 | Minus |
| 2R | 25286936 | 2R | 5791643..5792003 | 1152..792 | 1805 | 100 | Minus |
| 2R | 25286936 | 2R | 5791499..5791582 | 1234..1151 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:07:15 has no hits.
BO18514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:11 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 1..1221 | 17..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:54 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 1..1221 | 17..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:30 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 5..1222 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:11 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 1..1221 | 17..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:23 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 5..1222 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:23 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5791645..5792002 | 793..1150 | 100 | <- | Minus |
| 2R | 5791496..5791582 | 1151..1236 | 97 | <- | Minus |
| 2R | 5792188..5792963 | 17..792 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:30 Download gff for
BO18514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1679150..1679507 | 793..1150 | 100 | <- | Minus |
| arm_2R | 1679001..1679087 | 1151..1236 | 97 | <- | Minus |
| arm_2R | 1679693..1680468 | 17..792 | 100 | | Minus |
BO18514.pep Sequence
Translation from 16 to 1252
> BO18514.pep
MDLRRWFPTLYTQSKDSPVRSRDATLYLLRCVFLMGVRKPPAKFFVAYVL
WSFALNFCSTFYQPIGFLTGYISHLSEFSPGEFLTSLQVAFNAWSCSTKV
LIVWALVKRFDEANNLLDEMDRRITDPGERLQIHRAVSLSNRIFFFFMAV
YMVYATNTFLSAIFIGRPPYQNYYPFLDWRSSTLHLALQAGLEYFAMAGA
CFQDVCVDCYPVNFVLVLRAHMSIFAERLRRLGTYPYESQEQKYERLVQC
IQDHKVILRFVDCLRPVISGTIFVQFLVVGLVLGFTLINIVLFANLGSAI
AALSFMAAVLLETTPFCILCNYLTEDCYKLADALFQSNWIDEEKRYQKTL
MYFLQKLQQPITFMAMNVFPISVGTNISVTKFSFSVFTLVKQMNISEKLA
KSEMEEASFLDH
BO18514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-PA | 406 | CG17250-PA | 1..406 | 1..406 | 2116 | 100 | Plus |
| Or42b-PA | 399 | CG12754-PA | 16..395 | 20..398 | 955 | 47.9 | Plus |
| Or59b-PA | 398 | CG3569-PA | 16..396 | 19..398 | 845 | 42 | Plus |
| Or43b-PA | 403 | CG17853-PA | 5..403 | 7..403 | 753 | 36.8 | Plus |
| Or22a-PA | 397 | CG12193-PA | 2..395 | 3..398 | 738 | 37.3 | Plus |
