Clone Sequence Records
BO18518.3prime Sequence
729 bp (728 high quality bases) assembled on 2006-10-13
> BO18518.3prime
ATGGTCTAGAAAGCTTGCCTTATGACTATGTTGGTTAGAGAGGAAGGCGA
GGTGACCCTTGGGACACTTGTTCGCGTAGTGGCCCTTGTTCCCGCACTTG
TAGCAGGTGATCTCCTCCAGGGGCGTGGGCACCTTGACGAAGCCGGGACC
ATGCGGCTGACTGTGGTGATTGGATTGCATGTCATCGGCACCCTCGATGT
GGCCGGAGTGTCCAGAGTAGCCGCCCGAGTGTCCGCCGGAGTGATCCATT
GCGTTGATATTGTTGCGATGCTCCAGGCTGCCCACATACTGCTTGCACGA
GTTGGCCTTGTGGCCCAGCTCGCCGCAATAGTGGCACGTGGGCAGTTTCT
TGTGCAGCTGATCCTTACCCAGTTCCGCCAGCGGGGGCAGCTCGAAGTGC
GGATGCATGTGCTTGCAGGACGGGCCCTCGGGGCAGAAGCCGGCTAGGTA
GTCCATGCACAGGACACGGCGCAGATGCTGGTGCCGGCAGTGGGGACCGT
GGCGGCAGAAGCCTCTCTTGTACCACGGACAATCCTTCACCTTGCTCTGC
GGGTCGATGTGCAAAAAGGGACACTCTTTGTTGTGGCAGGCGTTGAACCT
CGAGTAGAAGTAGCACTCGGGCATCTTGGTCATGTCGTACTCGTGCAGGA
ACTCGCACTGGTCGCCCTTCTTGCACAGTCCTCTCAGCCAGTGCTTGCAC
ACGATCGTCCGGTCCCCGCGAATGTGTCG
BO18518.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3642-PA | 891 | Clp-RA | 178..888 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 293..1003 | 729..19 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820256..820966 | 729..19 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:54:58 has no hits.
BO18518.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:01 Download gff for
BO18518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3642-PA | 178..891 | 18..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:28 Download gff for
BO18518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 293..1003 | 19..729 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:57 Download gff for
BO18518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 293..1003 | 19..729 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:57 Download gff for
BO18518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820256..820966 | 19..729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:28 Download gff for
BO18518.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820256..820966 | 19..729 | 100 | | Minus |
BO18518.5prime Sequence
735 bp (689 high quality bases) assembled on 2006-10-13
> BO18518.5prime
GAAGTTATCAGTCGACATGGACATCCTTTTGGCCAACGTAAGTGGGCTGC
AGTTCAAGGCGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTG
CCGTTCTACGGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCAC
CAGGAACGGACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACA
TTCGCGGGGACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGC
AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGAT
GCCCGAGTGCTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGT
GTCCCTTTTTGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGG
TACAAGAGAGGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCT
GCGCCGTGTCCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCC
CGTCCTGCAAGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAA
CTGGGTAAGGATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGG
CGAGCTGGGCCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGG
AGCATCGCAACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGC
GGCTACTCTGGACACTCCGGCCACATCGAGGGTGC
BO18518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3642-PA | 891 | Clp-RA | 1..719 | 17..735 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 116..834 | 17..735 | 3595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820079..820797 | 17..735 | 3595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:45:08 has no hits.
BO18518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:02 Download gff for
BO18518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3642-PA | 1..719 | 17..735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:19 Download gff for
BO18518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..834 | 7..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:11 Download gff for
BO18518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..834 | 7..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:11 Download gff for
BO18518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820068..820797 | 7..735 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:19 Download gff for
BO18518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820068..820797 | 7..735 | 99 | | Plus |
BO18518.complete Sequence
922 bp assembled on 2006-10-11
GenBank Submission: FJ634446
> BO18518.complete
GAAGTTATCAGTCGACATGGACATCCTTTTGGCCAACGTAAGTGGGCTGC
AGTTCAAGGCGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTG
CCGTTCTACGGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCAC
CAGGAACGGACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACA
TTCGCGGGGACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGC
AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGAT
GCCCGAGTGCTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGT
GTCCCTTTTTGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGG
TACAAGAGAGGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCT
GCGCCGTGTCCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCC
CGTCCTGCAAGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAA
CTGGGTAAGGATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGG
CGAGCTGGGCCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGG
AGCATCGCAACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGC
GGCTACTCTGGACACTCCGGCCACATCGAGGGTGCCGATGACATGCAATC
CAATCACCACAGTCAGCCGCATGGTCCCGGCTTCGTCAAGGTGCCCACGC
CCCTGGAGGAGATCACCTGCTACAAGTGCGGGAACAAGGGCCACTACGCG
AACAAGTGTCCCAAGGGTCACCTCGCCTTCCTCTCTAACCAACATAGTCA
TAAGGCAAGCTTTCTAGACCAT
BO18518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 891 | CG3642-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 116..1003 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820079..820966 | 17..904 | 4440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:19:37 has no hits.
BO18518.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:13 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 1..891 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:57 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..1003 | 7..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:26 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 116..1003 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:13 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..1003 | 7..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:02 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 116..1003 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:02 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820079..820966 | 17..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:26 Download gff for
BO18518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820079..820966 | 17..906 | 99 | | Plus |
BO18518.pep Sequence
Translation from 16 to 922
> BO18518.pep
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHKASFL
DH
BO18518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-PA | 296 | CG3642-PA | 1..296 | 1..296 | 1713 | 100 | Plus |
