Clone BO18519 Report

Search the DGRC for BO18519

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptGstD8-RA
Protein status:BO18519.pep: validated full length
Sequenced Size:670

Clone Sequence Records

BO18519.3prime Sequence

668 bp (668 high quality bases) assembled on 2006-10-13

> BO18519.3prime
ATGGTCTAGAAAGCTTGCTTCATTCCTCTCCTGGACAAGTTTCTTGATTA
GCTGTACACCGTCCCAGTTCTCTTCCCAACCGGGAGTCACTTCCTTGGCA
TTCTCGTACCACCTGGCCACATTTGGATACTGGGCTATATCGAAGTCCAC
CACCTCAAAGGTGGAAACGGAGGCCAACAGGGCAATGTCGGCAATGGTGA
GGCAGTCGCCAGCCACATACTCCTGGTCCTCCAGGAAGGTGTCCAGGTGG
CCAAAGGCGCTGTCCACTTTCTGCATGGCCTCTGGATCGGCGGGATGATT
ATTCCTTATCTGTGGATAGATGGCCTCGACGAAACTCTGAAACAGGGTGC
CCATGTCGAAGTAGAGCCTCTGATTGACCACAGCCTTCTTCTGGGGATCG
CTGGGATACAGCGAGTCATCAGCGCCGTACTTCTCCACCAAGTAAATCAA
AATGGCACGGGATTCCCAGATGGAGAAGCCATCGTCCACCAGGGTGGGAA
TGCAGTGCTGTGGATTGAGCTTCACAAACTCCGGCTTCAGTTGCTCCCCG
TCCATGACCTTCAATAGCTTCATATTCAGGTCAACTCCAAGGGCCTTGGC
TGTCATTATAACGGAGCGGCAAGGAGCCGAGCAAGGATGGTAGTAAAAGT
CCATGTCGACTGATAACT

BO18519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4421-PA 639 GstD8-RA 1..636 654..19 3180 100 Minus
CG4181-PA 648 GstD2-RA 116..203 539..452 215 89.7 Minus
CG4181-PA 648 GstD2-RA 412..450 243..205 170 97.4 Minus
CG18548-PA 633 GstD10-RA 547..595 111..63 145 91.8 Minus
CG12242-PA 651 GstD5-RA 116..204 539..451 145 86.5 Minus
CG10045-PA 630 GstD1-RA 543..595 115..63 140 90.5 Minus
CG10045-PB 630 GstD1-RB 543..595 115..63 140 90.5 Minus
CG4371-PA 675 GstD7-RA 259..325 408..342 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..664 655..19 3185 100 Minus
GstD1-RB 843 CG10045-RB 95..687 651..59 670 75 Minus
GstD1-RA 825 CG10045-RA 77..669 651..59 670 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380671 655..19 3185 100 Minus
3R 32079331 3R 12367973..12368565 59..651 670 74.2 Plus
3R 32079331 3R 12372052..12372590 600..62 595 74 Minus
3R 32079331 3R 12375818..12376361 600..57 455 72.2 Minus
3R 32079331 3R 12378654..12378870 555..342 375 79.3 Minus
3R 32079331 3R 12373113..12373385 623..351 360 75.5 Minus
3R 32079331 3R 12374188..12374464 619..343 320 74.4 Minus
3R 32079331 3R 12377277..12377484 549..342 260 75 Minus
3R 32079331 3R 12364951..12365074 63..186 245 79.8 Plus
3R 32079331 3R 12365219..12365436 331..548 190 72.5 Plus
Blast to na_te.dros performed on 2015-02-06 10:30:24 has no hits.

BO18519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:02 Download gff for BO18519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4421-PA 1..639 16..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:19 Download gff for BO18519.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..649 19..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:56 Download gff for BO18519.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 24..664 19..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:56 Download gff for BO18519.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12380031..12380671 19..663 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:19 Download gff for BO18519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205753..8206393 19..663 99   Minus

BO18519.5prime Sequence

668 bp (668 high quality bases) assembled on 2006-10-13

> BO18519.5prime
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AAGCAAGCTTTCTAGACC

BO18519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4421-PA 639 GstD8-RA 1..636 17..652 3180 100 Plus
CG4181-PA 648 GstD2-RA 116..203 132..219 215 89.7 Plus
CG4181-PA 648 GstD2-RA 412..450 428..466 170 97.4 Plus
CG18548-PA 633 GstD10-RA 547..595 560..608 145 91.8 Plus
CG12242-PA 651 GstD5-RA 116..204 132..220 145 86.5 Plus
CG10045-PA 630 GstD1-RA 543..595 556..608 140 90.5 Plus
CG10045-PB 630 GstD1-RB 543..595 556..608 140 90.5 Plus
CG4371-PA 675 GstD7-RA 259..325 263..329 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..664 16..652 3185 100 Plus
GstD1-RB 843 CG10045-RB 95..687 20..612 670 75 Plus
GstD1-RA 825 CG10045-RA 77..669 20..612 670 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380671 16..652 3185 100 Plus
3R 32079331 3R 12367973..12368565 612..20 670 74.2 Minus
3R 32079331 3R 12372052..12372590 71..609 595 74 Plus
3R 32079331 3R 12375818..12376361 71..614 455 72.2 Plus
3R 32079331 3R 12378654..12378870 116..329 375 79.3 Plus
3R 32079331 3R 12373113..12373385 48..320 360 75.5 Plus
3R 32079331 3R 12374188..12374464 52..328 320 74.4 Plus
3R 32079331 3R 12377277..12377484 122..329 260 75 Plus
3R 32079331 3R 12364951..12365074 608..485 245 79.8 Minus
3R 32079331 3R 12365219..12365436 340..123 190 72.5 Minus
Blast to na_te.dros performed on 2015-02-10 21:08:59 has no hits.

BO18519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:03 Download gff for BO18519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4421-PA 1..639 17..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:56 Download gff for BO18519.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..649 8..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:38 Download gff for BO18519.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 24..664 8..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:38 Download gff for BO18519.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12380031..12380671 8..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:56 Download gff for BO18519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205753..8206393 8..652 99   Plus

BO18519.complete Sequence

670 bp assembled on 2006-10-11

GenBank Submission: FJ634447

> BO18519.complete
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AAGCAAGCTTTCTAGACCAT

BO18519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 639 CG4421-PA 1..636 17..652 3180 100 Plus
GstD1-RB 630 CG10045-PB 7..599 20..612 670 74.2 Plus
GstD1-RA 630 CG10045-PA 7..599 20..612 670 74.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..664 16..652 3185 100 Plus
GstD1-RB 843 CG10045-RB 95..687 20..612 670 74.2 Plus
GstD1-RA 825 CG10045-RA 77..669 20..612 670 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380671 16..652 3185 100 Plus
3R 32079331 3R 12367973..12368565 612..20 670 74.2 Minus
3R 32079331 3R 12372052..12372590 71..609 595 74 Plus
3R 32079331 3R 12375818..12376361 71..614 455 72.2 Plus
3R 32079331 3R 12378654..12378870 116..329 375 79.3 Plus
3R 32079331 3R 12373113..12373385 48..320 360 75.5 Plus
3R 32079331 3R 12374188..12374464 52..328 320 74.4 Plus
3R 32079331 3R 12377277..12377484 122..329 260 75 Plus
3R 32079331 3R 12364951..12365074 608..485 245 79.8 Minus
3R 32079331 3R 12365219..12365436 340..123 190 72.5 Minus
Blast to na_te.dros performed on 2014-11-28 00:41:03 has no hits.

BO18519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:25 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 17..655 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:00 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..649 8..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:23 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 14..649 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:26 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..649 8..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:43 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 29..664 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:43 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12380036..12380671 17..654 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:23 Download gff for BO18519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205758..8206393 17..654 99   Plus

BO18519.pep Sequence

Translation from 16 to 670

> BO18519.pep
MDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKLNPQH
CIPTLVDDGFSIWESRAILIYLVEKYGADDSLYPSDPQKKAVVNQRLYFD
MGTLFQSFVEAIYPQIRNNHPADPEAMQKVDSAFGHLDTFLEDQEYVAGD
CLTIADIALLASVSTFEVVDFDIAQYPNVARWYENAKEVTPGWEENWDGV
QLIKKLVQERNEASFLDH

BO18519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-PA 212 CG4421-PA 1..212 1..212 1127 100 Plus
GstD2-PA 215 CG4181-PA 1..214 1..214 774 65.4 Plus
GstD1-PB 209 CG10045-PB 2..206 1..205 762 68.3 Plus
GstD1-PA 209 CG10045-PA 2..206 1..205 762 68.3 Plus
GstD5-PA 216 CG12242-PA 1..214 1..214 749 64 Plus