Clone Sequence Records
BO18519.3prime Sequence
668 bp (668 high quality bases) assembled on 2006-10-13
> BO18519.3prime
ATGGTCTAGAAAGCTTGCTTCATTCCTCTCCTGGACAAGTTTCTTGATTA
GCTGTACACCGTCCCAGTTCTCTTCCCAACCGGGAGTCACTTCCTTGGCA
TTCTCGTACCACCTGGCCACATTTGGATACTGGGCTATATCGAAGTCCAC
CACCTCAAAGGTGGAAACGGAGGCCAACAGGGCAATGTCGGCAATGGTGA
GGCAGTCGCCAGCCACATACTCCTGGTCCTCCAGGAAGGTGTCCAGGTGG
CCAAAGGCGCTGTCCACTTTCTGCATGGCCTCTGGATCGGCGGGATGATT
ATTCCTTATCTGTGGATAGATGGCCTCGACGAAACTCTGAAACAGGGTGC
CCATGTCGAAGTAGAGCCTCTGATTGACCACAGCCTTCTTCTGGGGATCG
CTGGGATACAGCGAGTCATCAGCGCCGTACTTCTCCACCAAGTAAATCAA
AATGGCACGGGATTCCCAGATGGAGAAGCCATCGTCCACCAGGGTGGGAA
TGCAGTGCTGTGGATTGAGCTTCACAAACTCCGGCTTCAGTTGCTCCCCG
TCCATGACCTTCAATAGCTTCATATTCAGGTCAACTCCAAGGGCCTTGGC
TGTCATTATAACGGAGCGGCAAGGAGCCGAGCAAGGATGGTAGTAAAAGT
CCATGTCGACTGATAACT
BO18519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4421-PA | 639 | GstD8-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
CG4181-PA | 648 | GstD2-RA | 116..203 | 539..452 | 215 | 89.7 | Minus |
CG4181-PA | 648 | GstD2-RA | 412..450 | 243..205 | 170 | 97.4 | Minus |
CG18548-PA | 633 | GstD10-RA | 547..595 | 111..63 | 145 | 91.8 | Minus |
CG12242-PA | 651 | GstD5-RA | 116..204 | 539..451 | 145 | 86.5 | Minus |
CG10045-PA | 630 | GstD1-RA | 543..595 | 115..63 | 140 | 90.5 | Minus |
CG10045-PB | 630 | GstD1-RB | 543..595 | 115..63 | 140 | 90.5 | Minus |
CG4371-PA | 675 | GstD7-RA | 259..325 | 408..342 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD8-RA | 808 | CG4421-RA | 28..664 | 655..19 | 3185 | 100 | Minus |
GstD1-RB | 843 | CG10045-RB | 95..687 | 651..59 | 670 | 75 | Minus |
GstD1-RA | 825 | CG10045-RA | 77..669 | 651..59 | 670 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12380035..12380671 | 655..19 | 3185 | 100 | Minus |
3R | 32079331 | 3R | 12367973..12368565 | 59..651 | 670 | 74.2 | Plus |
3R | 32079331 | 3R | 12372052..12372590 | 600..62 | 595 | 74 | Minus |
3R | 32079331 | 3R | 12375818..12376361 | 600..57 | 455 | 72.2 | Minus |
3R | 32079331 | 3R | 12378654..12378870 | 555..342 | 375 | 79.3 | Minus |
3R | 32079331 | 3R | 12373113..12373385 | 623..351 | 360 | 75.5 | Minus |
3R | 32079331 | 3R | 12374188..12374464 | 619..343 | 320 | 74.4 | Minus |
3R | 32079331 | 3R | 12377277..12377484 | 549..342 | 260 | 75 | Minus |
3R | 32079331 | 3R | 12364951..12365074 | 63..186 | 245 | 79.8 | Plus |
3R | 32079331 | 3R | 12365219..12365436 | 331..548 | 190 | 72.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:30:24 has no hits.
BO18519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:02 Download gff for
BO18519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4421-PA | 1..639 | 16..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:19 Download gff for
BO18519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 9..649 | 19..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:56 Download gff for
BO18519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 24..664 | 19..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:56 Download gff for
BO18519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12380031..12380671 | 19..663 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:19 Download gff for
BO18519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8205753..8206393 | 19..663 | 99 | | Minus |
BO18519.5prime Sequence
668 bp (668 high quality bases) assembled on 2006-10-13
> BO18519.5prime
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AAGCAAGCTTTCTAGACC
BO18519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4421-PA | 639 | GstD8-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG4181-PA | 648 | GstD2-RA | 116..203 | 132..219 | 215 | 89.7 | Plus |
CG4181-PA | 648 | GstD2-RA | 412..450 | 428..466 | 170 | 97.4 | Plus |
CG18548-PA | 633 | GstD10-RA | 547..595 | 560..608 | 145 | 91.8 | Plus |
CG12242-PA | 651 | GstD5-RA | 116..204 | 132..220 | 145 | 86.5 | Plus |
CG10045-PA | 630 | GstD1-RA | 543..595 | 556..608 | 140 | 90.5 | Plus |
CG10045-PB | 630 | GstD1-RB | 543..595 | 556..608 | 140 | 90.5 | Plus |
CG4371-PA | 675 | GstD7-RA | 259..325 | 263..329 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD8-RA | 808 | CG4421-RA | 28..664 | 16..652 | 3185 | 100 | Plus |
GstD1-RB | 843 | CG10045-RB | 95..687 | 20..612 | 670 | 75 | Plus |
GstD1-RA | 825 | CG10045-RA | 77..669 | 20..612 | 670 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12380035..12380671 | 16..652 | 3185 | 100 | Plus |
3R | 32079331 | 3R | 12367973..12368565 | 612..20 | 670 | 74.2 | Minus |
3R | 32079331 | 3R | 12372052..12372590 | 71..609 | 595 | 74 | Plus |
3R | 32079331 | 3R | 12375818..12376361 | 71..614 | 455 | 72.2 | Plus |
3R | 32079331 | 3R | 12378654..12378870 | 116..329 | 375 | 79.3 | Plus |
3R | 32079331 | 3R | 12373113..12373385 | 48..320 | 360 | 75.5 | Plus |
3R | 32079331 | 3R | 12374188..12374464 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12377277..12377484 | 122..329 | 260 | 75 | Plus |
3R | 32079331 | 3R | 12364951..12365074 | 608..485 | 245 | 79.8 | Minus |
3R | 32079331 | 3R | 12365219..12365436 | 340..123 | 190 | 72.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:59 has no hits.
BO18519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:03 Download gff for
BO18519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4421-PA | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:56 Download gff for
BO18519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 9..649 | 8..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:38 Download gff for
BO18519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 24..664 | 8..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:38 Download gff for
BO18519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12380031..12380671 | 8..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:56 Download gff for
BO18519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8205753..8206393 | 8..652 | 99 | | Plus |
BO18519.complete Sequence
670 bp assembled on 2006-10-11
GenBank Submission: FJ634447
> BO18519.complete
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AAGCAAGCTTTCTAGACCAT
BO18519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD8-RA | 639 | CG4421-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
GstD1-RB | 630 | CG10045-PB | 7..599 | 20..612 | 670 | 74.2 | Plus |
GstD1-RA | 630 | CG10045-PA | 7..599 | 20..612 | 670 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD8-RA | 808 | CG4421-RA | 28..664 | 16..652 | 3185 | 100 | Plus |
GstD1-RB | 843 | CG10045-RB | 95..687 | 20..612 | 670 | 74.2 | Plus |
GstD1-RA | 825 | CG10045-RA | 77..669 | 20..612 | 670 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12380035..12380671 | 16..652 | 3185 | 100 | Plus |
3R | 32079331 | 3R | 12367973..12368565 | 612..20 | 670 | 74.2 | Minus |
3R | 32079331 | 3R | 12372052..12372590 | 71..609 | 595 | 74 | Plus |
3R | 32079331 | 3R | 12375818..12376361 | 71..614 | 455 | 72.2 | Plus |
3R | 32079331 | 3R | 12378654..12378870 | 116..329 | 375 | 79.3 | Plus |
3R | 32079331 | 3R | 12373113..12373385 | 48..320 | 360 | 75.5 | Plus |
3R | 32079331 | 3R | 12374188..12374464 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12377277..12377484 | 122..329 | 260 | 75 | Plus |
3R | 32079331 | 3R | 12364951..12365074 | 608..485 | 245 | 79.8 | Minus |
3R | 32079331 | 3R | 12365219..12365436 | 340..123 | 190 | 72.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:41:03 has no hits.
BO18519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:25 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:00 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 9..649 | 8..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:23 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 14..649 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:26 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 9..649 | 8..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:43 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD8-RA | 29..664 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:43 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12380036..12380671 | 17..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:23 Download gff for
BO18519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8205758..8206393 | 17..654 | 99 | | Plus |
BO18519.pep Sequence
Translation from 16 to 670
> BO18519.pep
MDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKLNPQH
CIPTLVDDGFSIWESRAILIYLVEKYGADDSLYPSDPQKKAVVNQRLYFD
MGTLFQSFVEAIYPQIRNNHPADPEAMQKVDSAFGHLDTFLEDQEYVAGD
CLTIADIALLASVSTFEVVDFDIAQYPNVARWYENAKEVTPGWEENWDGV
QLIKKLVQERNEASFLDH
BO18519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD8-PA | 212 | CG4421-PA | 1..212 | 1..212 | 1127 | 100 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..214 | 1..214 | 774 | 65.4 | Plus |
GstD1-PB | 209 | CG10045-PB | 2..206 | 1..205 | 762 | 68.3 | Plus |
GstD1-PA | 209 | CG10045-PA | 2..206 | 1..205 | 762 | 68.3 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..214 | 1..214 | 749 | 64 | Plus |