Clone Sequence Records
BO18520.3prime Sequence
791 bp (739 high quality bases) assembled on 2006-10-13
> BO18520.3prime
ATGGTCTAGAAAGCTTGCTAACTTTTCTATTAAGTTTTCGGCTAGAAATT
TTTTGGCGCTTTGAATTCTTGCCAAGTTCTCGTCCCAACCCGGCGTAACT
TTTTGGGCGTTCTTATACCATCTGTCCACGTTGGGAAACTTCTTTAAATC
GAAGTCAACCATTTCGGTTGTGGAAACGGTGGCCAATATAACGATATCTG
CCACTGAAAGCTGATTGCCGGCCACGTAATCCTGGCCATCCAGGAAGTTG
TTGAGAAGATCGAAGGCAGCGTTCAGTTTCTCAAGATTCTCCTGAGTTCC
GGGTTTGCCCGTCCGAAGCAGTGGGAAAAAGTACTTGGCAATGCCATCGT
ACAGGGTGCCCATATCGAAGTACAGACGCTGGTTGATCAGCGCTTGCTTC
TGGGGATCCTTCGGGTACAGAGAATCATCCTTACCGTACTGCTCCACTAG
GTAGACAACAATGGCCCGAGTTTCCCAAATAACGAATAAATTGTCCACCA
GGGTTGGAATCGTGTGCTGAGGGTTTATCTTTACAAACCATGGCTCCAGT
TGTTCCCCCACAAAGGTATTAACTTGTATCGAGTTGAACTCGACTCCCAC
AGCTTTGGCGGTCATCATAACGGCCCGGGTGCTCGGGGAACCAGACATGT
TATAGAGATCCATCGTCAGAAGGGCTGGGGGAATCCGTCTAGTGCACTTC
AGTTCCACGGCACCTTTCCAGTTCTCTTCCCATCCGGGAGTCACCTTCTT
GGCGTTGGCATACCACCTGGCCACATTCGGGTACTTGTTGA
BO18520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4423-PA | 648 | GstD6-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
CG12242-PA | 651 | GstD5-RA | 518..612 | 791..697 | 475 | 100 | Minus |
CG10045-PA | 630 | GstD1-RA | 556..594 | 756..718 | 170 | 97.4 | Minus |
CG10045-PB | 630 | GstD1-RB | 556..594 | 756..718 | 170 | 97.4 | Minus |
CG4181-PA | 648 | GstD2-RA | 275..317 | 389..347 | 140 | 93 | Minus |
CG4181-PA | 648 | GstD2-RA | 539..591 | 770..718 | 140 | 90.5 | Minus |
CG4371-PA | 675 | GstD7-RA | 287..329 | 389..347 | 140 | 93 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD6-RA | 780 | CG4423-RA | 10..689 | 698..19 | 3400 | 100 | Minus |
GstD7-RA | 756 | CG4371-RA | 160..639 | 559..83 | 545 | 75.2 | Minus |
GstD5-RA | 840 | CG12242-RA | 549..643 | 791..697 | 475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12377137..12377816 | 698..19 | 3400 | 100 | Minus |
3R | 32079331 | 3R | 12378659..12379138 | 559..83 | 505 | 74.2 | Minus |
3R | 32079331 | 3R | 12376281..12376375 | 791..697 | 475 | 100 | Minus |
3R | 32079331 | 3R | 12372102..12372331 | 559..330 | 415 | 78.7 | Minus |
3R | 32079331 | 3R | 12375909..12376352 | 518..75 | 390 | 72.5 | Minus |
3R | 32079331 | 3R | 12374297..12374464 | 519..352 | 300 | 78.6 | Minus |
3R | 32079331 | 3R | 12380141..12380348 | 558..351 | 260 | 75 | Minus |
3R | 32079331 | 3R | 12367978..12368051 | 718..791 | 235 | 87.8 | Plus |
3R | 32079331 | 3R | 12368235..12368436 | 330..531 | 230 | 74.3 | Plus |
3R | 32079331 | 3R | 12372515..12372588 | 791..718 | 220 | 86.5 | Minus |
3R | 32079331 | 3R | 12380559..12380633 | 785..711 | 210 | 85.3 | Minus |
3R | 32079331 | 3R | 12365229..12365398 | 350..519 | 205 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:32 has no hits.
BO18520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:03 Download gff for
BO18520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4423-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:58 Download gff for
BO18520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..653 | 11..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:39 Download gff for
BO18520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 10..697 | 11..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:39 Download gff for
BO18520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12376282..12376378 | 697..790 | 96 | -> | Minus |
3R | 12377139..12377824 | 11..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:58 Download gff for
BO18520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8202004..8202100 | 697..790 | 96 | -> | Minus |
arm_3R | 8202861..8203546 | 11..696 | 99 | | Minus |
BO18520.5prime Sequence
801 bp (791 high quality bases) assembled on 2006-10-13
> BO18520.5prime
GAAGTTATCAGTCGACATGGGAACTCTGTACGACAGCTTCGCCAAATACT
ACTATCCCCTTTTCCACACTGGAAAGCCCGGATCTGATGAGGACTTTAAG
AAGATCGAGAGCTCCTTCGAGTATCTGAATATCTTCCTGGAGGGCCAGAA
CTACGTGGCCGGTGACCACCTCACAGTGGCTGATATTGCCATCCTCTCCA
CCGTTTCCACTTTCGAAATCTTTGATTTCGACCTCAACAAGTACCCGAAT
GTGGCCAGGTGGTATGCCAACGCCAAGAAGGTGACTCCCGGATGGGAAGA
GAACTGGAAAGGTGCCGTGGAACTGAAGTGCACTAGACGGATTCCCCCAG
CCCTTCTGACGATGGATCTCTATAACATGTCTGGTTCCCCGAGCACCCGG
GCCGTTATGATGACCGCCAAAGCTGTGGGAGTCGAGTTCAACTCGATACA
AGTTAATACCTTTGTGGGGGAACAACTGGAGCCATGGTTTGTAAAGATAA
ACCCTCAGCACACGATTCCAACCCTGGTGGACAATTTATTCGTTATTTGG
GAAACTCGGGCCATTGTTGTCTACCTAGTGGAGCAGTACGGTAAGGATGA
TTCTCTGTACCCGAAGGATCCCCAGAAGCAAGCGCTGATCAACCAGCGTC
TGTACTTCGATATGGGCACCCTGTACGATGGCATTGCCAAGTACTTTTTC
CCACTGCTTCGGACGGGCAAACCCGGAACTCAGGAGAATCTTGAGAAACT
GAACGCTGCCTTCGATCTTCTCAACAACTTCCTGGATGGCCAGGATTACG
T
BO18520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4423-PA | 648 | GstD6-RA | 1..440 | 362..801 | 2200 | 100 | Plus |
CG12242-PA | 651 | GstD5-RA | 296..612 | 12..328 | 1585 | 100 | Plus |
CG4181-PA | 648 | GstD2-RA | 296..380 | 12..96 | 325 | 95.2 | Plus |
CG10045-PA | 630 | GstD1-RA | 556..594 | 269..307 | 170 | 97.4 | Plus |
CG10045-PB | 630 | GstD1-RB | 556..594 | 269..307 | 170 | 97.4 | Plus |
CG4181-PA | 648 | GstD2-RA | 539..591 | 255..307 | 140 | 90.5 | Plus |
CG4181-PA | 648 | GstD2-RA | 275..317 | 636..678 | 140 | 93 | Plus |
CG4371-PA | 675 | GstD7-RA | 287..329 | 636..678 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD6-RA | 780 | CG4423-RA | 10..484 | 327..801 | 2375 | 100 | Plus |
GstD5-RA | 840 | CG12242-RA | 327..643 | 12..328 | 1585 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 323..618 | 12..307 | 760 | 83.8 | Plus |
GstD5-RA | 840 | CG12242-RA | 177..365 | 507..695 | 300 | 77.2 | Plus |
GstD6-RA | 780 | CG4423-RA | 442..633 | 114..305 | 210 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12377137..12377611 | 327..801 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 12376059..12376375 | 12..328 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 12372293..12372588 | 12..307 | 760 | 83.8 | Plus |
3R | 32079331 | 3R | 12372102..12372331 | 466..695 | 415 | 78.7 | Plus |
3R | 32079331 | 3R | 12374570..12374749 | 134..313 | 405 | 81.7 | Plus |
3R | 32079331 | 3R | 12367978..12368196 | 307..89 | 390 | 78.5 | Minus |
3R | 32079331 | 3R | 12378659..12378991 | 466..795 | 370 | 74.8 | Plus |
3R | 32079331 | 3R | 12374297..12374464 | 506..673 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12375909..12376097 | 507..695 | 300 | 77.2 | Plus |
3R | 32079331 | 3R | 12380141..12380348 | 467..674 | 260 | 75 | Plus |
3R | 32079331 | 3R | 12380452..12380633 | 133..314 | 250 | 75.8 | Plus |
3R | 32079331 | 3R | 12373499..12373672 | 134..307 | 240 | 75.9 | Plus |
3R | 32079331 | 3R | 12368235..12368436 | 695..494 | 230 | 74.3 | Minus |
3R | 32079331 | 3R | 12377569..12377760 | 114..305 | 210 | 74 | Plus |
3R | 32079331 | 3R | 12365229..12365398 | 675..506 | 205 | 74.7 | Minus |
3R | 32079331 | 3R | 12378974..12379103 | 133..262 | 200 | 76.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:45:42 has no hits.
BO18520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:04 Download gff for
BO18520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4423-PA | 1..440 | 362..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:25 Download gff for
BO18520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..440 | 362..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:16 Download gff for
BO18520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 10..484 | 327..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:16 Download gff for
BO18520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12376055..12376378 | 6..328 | 98 | -> | Plus |
3R | 12377139..12377611 | 329..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:25 Download gff for
BO18520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8201777..8202100 | 6..328 | 98 | -> | Plus |
arm_3R | 8202861..8203333 | 329..801 | 100 | | Plus |
BO18520.complete Sequence
1024 bp assembled on 2006-10-11
GenBank Submission: FJ634448
> BO18520.complete
GAAGTTATCAGTCGACATGGGAACTCTGTACGACAGCTTCGCCAAATACT
ACTATCCCCTTTTCCACACTGGAAAGCCCGGATCTGATGAGGACTTTAAG
AAGATCGAGAGCTCCTTCGAGTATCTGAATATCTTCCTGGAGGGCCAGAA
CTACGTGGCCGGTGACCACCTCACAGTGGCTGATATTGCCATCCTCTCCA
CCGTTTCCACTTTCGAAATCTTTGATTTCGACCTCAACAAGTACCCGAAT
GTGGCCAGGTGGTATGCCAACGCCAAGAAGGTGACTCCCGGATGGGAAGA
GAACTGGAAAGGTGCCGTGGAACTGAAGTGCACTAGACGGATTCCCCCAG
CCCTTCTGACGATGGATCTCTATAACATGTCTGGTTCCCCGAGCACCCGG
GCCGTTATGATGACCGCCAAAGCTGTGGGAGTCGAGTTCAACTCGATACA
AGTTAATACCTTTGTGGGGGAACAACTGGAGCCATGGTTTGTAAAGATAA
ACCCTCAGCACACGATTCCAACCCTGGTGGACAATTTATTCGTTATTTGG
GAAACTCGGGCCATTGTTGTCTACCTAGTGGAGCAGTACGGTAAGGATGA
TTCTCTGTACCCGAAGGATCCCCAGAAGCAAGCGCTGATCAACCAGCGTC
TGTACTTCGATATGGGCACCCTGTACGATGGCATTGCCAAGTACTTTTTC
CCACTGCTTCGGACGGGCAAACCCGGAACTCAGGAGAATCTTGAGAAACT
GAACGCTGCCTTCGATCTTCTCAACAACTTCCTGGATGGCCAGGATTACG
TGGCCGGCAATCAGCTTTCAGTGGCAGATATCGTTATATTGGCCACCGTT
TCCACAACCGAAATGGTTGACTTCGATTTAAAGAAGTTTCCCAACGTGGA
CAGATGGTATAAGAACGCCCAAAAAGTTACGCCGGGTTGGGACGAGAACT
TGGCAAGAATTCAAAGCGCCAAAAAATTTCTAGCCGAAAACTTAATAGAA
AAGTTAGCAAGCTTTCTAGACCAT
BO18520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD6-RA | 648 | CG4423-PA | 1..645 | 362..1006 | 3225 | 100 | Plus |
GstD5-RA | 651 | CG12242-PA | 296..612 | 12..328 | 1585 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 296..591 | 12..307 | 760 | 83.8 | Plus |
GstD5-RA | 651 | CG12242-PA | 146..589 | 507..950 | 390 | 72.5 | Plus |
GstD6-RA | 648 | CG4423-PA | 398..589 | 114..305 | 210 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD6-RA | 780 | CG4423-RA | 10..689 | 327..1006 | 3400 | 100 | Plus |
GstD5-RA | 840 | CG12242-RA | 327..643 | 12..328 | 1585 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 323..618 | 12..307 | 760 | 83.8 | Plus |
GstD5-RA | 840 | CG12242-RA | 177..620 | 507..950 | 390 | 72.5 | Plus |
GstD6-RA | 780 | CG4423-RA | 442..633 | 114..305 | 210 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12377137..12377816 | 327..1006 | 3400 | 100 | Plus |
3R | 32079331 | 3R | 12376059..12376375 | 12..328 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 12372293..12372588 | 12..307 | 760 | 83.8 | Plus |
3R | 32079331 | 3R | 12378659..12379138 | 466..942 | 505 | 74.2 | Plus |
3R | 32079331 | 3R | 12372102..12372331 | 466..695 | 415 | 78.7 | Plus |
3R | 32079331 | 3R | 12374570..12374749 | 134..313 | 405 | 81.7 | Plus |
3R | 32079331 | 3R | 12367978..12368196 | 307..89 | 390 | 78.5 | Minus |
3R | 32079331 | 3R | 12375909..12376352 | 507..950 | 390 | 72.5 | Plus |
3R | 32079331 | 3R | 12374297..12374464 | 506..673 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12380141..12380348 | 467..674 | 260 | 75 | Plus |
3R | 32079331 | 3R | 12380452..12380633 | 133..314 | 250 | 75.8 | Plus |
3R | 32079331 | 3R | 12373499..12373672 | 134..307 | 240 | 75.9 | Plus |
3R | 32079331 | 3R | 12368235..12368436 | 695..494 | 230 | 74.3 | Minus |
3R | 32079331 | 3R | 12377569..12377760 | 114..305 | 210 | 74 | Plus |
3R | 32079331 | 3R | 12365229..12365398 | 675..506 | 205 | 74.7 | Minus |
3R | 32079331 | 3R | 12378974..12379103 | 133..262 | 200 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:54 has no hits.
BO18520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:14 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..648 | 362..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:59 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..648 | 362..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:15 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..645 | 362..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:14 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 1..648 | 362..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:54 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD6-RA | 10..689 | 327..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12376064..12376378 | 17..328 | 99 | -> | Plus |
3R | 12377139..12377816 | 329..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:15 Download gff for
BO18520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8201786..8202100 | 17..328 | 99 | -> | Plus |
arm_3R | 8202861..8203538 | 329..1008 | 99 | | Plus |
BO18520.pep Sequence
Translation from 16 to 1024
> BO18520.pep
MGTLYDSFAKYYYPLFHTGKPGSDEDFKKIESSFEYLNIFLEGQNYVAGD
HLTVADIAILSTVSTFEIFDFDLNKYPNVARWYANAKKVTPGWEENWKGA
VELKCTRRIPPALLTMDLYNMSGSPSTRAVMMTAKAVGVEFNSIQVNTFV
GEQLEPWFVKINPQHTIPTLVDNLFVIWETRAIVVYLVEQYGKDDSLYPK
DPQKQALINQRLYFDMGTLYDGIAKYFFPLLRTGKPGTQENLEKLNAAFD
LLNNFLDGQDYVAGNQLSVADIVILATVSTTEMVDFDLKKFPNVDRWYKN
AQKVTPGWDENLARIQSAKKFLAENLIEKLASFLDH
BO18520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD6-PA | 215 | CG4423-PA | 1..215 | 116..330 | 1118 | 100 | Plus |
GstD7-PA | 224 | CG4371-PA | 4..213 | 116..324 | 760 | 68.6 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..204 | 116..319 | 700 | 63.2 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..196 | 116..311 | 695 | 64.8 | Plus |
GstD4-PA | 215 | CG11512-PA | 1..196 | 116..311 | 689 | 63.8 | Plus |
GstD5-PA | 216 | CG12242-PA | 101..204 | 1..104 | 563 | 100 | Plus |
GstD2-PA | 215 | CG4181-PA | 101..204 | 1..104 | 439 | 75 | Plus |
GstD6-PA | 215 | CG4423-PA | 101..196 | 1..96 | 354 | 64.6 | Plus |
GstD7-PA | 224 | CG4371-PA | 105..200 | 1..96 | 326 | 62.5 | Plus |