Clone BO18520 Report

Search the DGRC for BO18520

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:20
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18520.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO18520.3prime Sequence

791 bp (739 high quality bases) assembled on 2006-10-13

> BO18520.3prime
ATGGTCTAGAAAGCTTGCTAACTTTTCTATTAAGTTTTCGGCTAGAAATT
TTTTGGCGCTTTGAATTCTTGCCAAGTTCTCGTCCCAACCCGGCGTAACT
TTTTGGGCGTTCTTATACCATCTGTCCACGTTGGGAAACTTCTTTAAATC
GAAGTCAACCATTTCGGTTGTGGAAACGGTGGCCAATATAACGATATCTG
CCACTGAAAGCTGATTGCCGGCCACGTAATCCTGGCCATCCAGGAAGTTG
TTGAGAAGATCGAAGGCAGCGTTCAGTTTCTCAAGATTCTCCTGAGTTCC
GGGTTTGCCCGTCCGAAGCAGTGGGAAAAAGTACTTGGCAATGCCATCGT
ACAGGGTGCCCATATCGAAGTACAGACGCTGGTTGATCAGCGCTTGCTTC
TGGGGATCCTTCGGGTACAGAGAATCATCCTTACCGTACTGCTCCACTAG
GTAGACAACAATGGCCCGAGTTTCCCAAATAACGAATAAATTGTCCACCA
GGGTTGGAATCGTGTGCTGAGGGTTTATCTTTACAAACCATGGCTCCAGT
TGTTCCCCCACAAAGGTATTAACTTGTATCGAGTTGAACTCGACTCCCAC
AGCTTTGGCGGTCATCATAACGGCCCGGGTGCTCGGGGAACCAGACATGT
TATAGAGATCCATCGTCAGAAGGGCTGGGGGAATCCGTCTAGTGCACTTC
AGTTCCACGGCACCTTTCCAGTTCTCTTCCCATCCGGGAGTCACCTTCTT
GGCGTTGGCATACCACCTGGCCACATTCGGGTACTTGTTGA

BO18520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4423-PA 648 GstD6-RA 1..645 663..19 3225 100 Minus
CG12242-PA 651 GstD5-RA 518..612 791..697 475 100 Minus
CG10045-PA 630 GstD1-RA 556..594 756..718 170 97.4 Minus
CG10045-PB 630 GstD1-RB 556..594 756..718 170 97.4 Minus
CG4181-PA 648 GstD2-RA 275..317 389..347 140 93 Minus
CG4181-PA 648 GstD2-RA 539..591 770..718 140 90.5 Minus
CG4371-PA 675 GstD7-RA 287..329 389..347 140 93 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
GstD6-RA 780 CG4423-RA 10..689 698..19 3400 100 Minus
GstD7-RA 756 CG4371-RA 160..639 559..83 545 75.2 Minus
GstD5-RA 840 CG12242-RA 549..643 791..697 475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12377137..12377816 698..19 3400 100 Minus
3R 32079331 3R 12378659..12379138 559..83 505 74.2 Minus
3R 32079331 3R 12376281..12376375 791..697 475 100 Minus
3R 32079331 3R 12372102..12372331 559..330 415 78.7 Minus
3R 32079331 3R 12375909..12376352 518..75 390 72.5 Minus
3R 32079331 3R 12374297..12374464 519..352 300 78.6 Minus
3R 32079331 3R 12380141..12380348 558..351 260 75 Minus
3R 32079331 3R 12367978..12368051 718..791 235 87.8 Plus
3R 32079331 3R 12368235..12368436 330..531 230 74.3 Plus
3R 32079331 3R 12372515..12372588 791..718 220 86.5 Minus
3R 32079331 3R 12380559..12380633 785..711 210 85.3 Minus
3R 32079331 3R 12365229..12365398 350..519 205 74.7 Plus
Blast to na_te.dros performed on 2015-02-12 03:58:32 has no hits.

BO18520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:03 Download gff for BO18520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4423-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:58 Download gff for BO18520.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..653 11..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:39 Download gff for BO18520.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 10..697 11..698 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:39 Download gff for BO18520.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12376282..12376378 697..790 96 -> Minus
3R 12377139..12377824 11..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:58 Download gff for BO18520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8202004..8202100 697..790 96 -> Minus
arm_3R 8202861..8203546 11..696 99   Minus

BO18520.5prime Sequence

801 bp (791 high quality bases) assembled on 2006-10-13

> BO18520.5prime
GAAGTTATCAGTCGACATGGGAACTCTGTACGACAGCTTCGCCAAATACT
ACTATCCCCTTTTCCACACTGGAAAGCCCGGATCTGATGAGGACTTTAAG
AAGATCGAGAGCTCCTTCGAGTATCTGAATATCTTCCTGGAGGGCCAGAA
CTACGTGGCCGGTGACCACCTCACAGTGGCTGATATTGCCATCCTCTCCA
CCGTTTCCACTTTCGAAATCTTTGATTTCGACCTCAACAAGTACCCGAAT
GTGGCCAGGTGGTATGCCAACGCCAAGAAGGTGACTCCCGGATGGGAAGA
GAACTGGAAAGGTGCCGTGGAACTGAAGTGCACTAGACGGATTCCCCCAG
CCCTTCTGACGATGGATCTCTATAACATGTCTGGTTCCCCGAGCACCCGG
GCCGTTATGATGACCGCCAAAGCTGTGGGAGTCGAGTTCAACTCGATACA
AGTTAATACCTTTGTGGGGGAACAACTGGAGCCATGGTTTGTAAAGATAA
ACCCTCAGCACACGATTCCAACCCTGGTGGACAATTTATTCGTTATTTGG
GAAACTCGGGCCATTGTTGTCTACCTAGTGGAGCAGTACGGTAAGGATGA
TTCTCTGTACCCGAAGGATCCCCAGAAGCAAGCGCTGATCAACCAGCGTC
TGTACTTCGATATGGGCACCCTGTACGATGGCATTGCCAAGTACTTTTTC
CCACTGCTTCGGACGGGCAAACCCGGAACTCAGGAGAATCTTGAGAAACT
GAACGCTGCCTTCGATCTTCTCAACAACTTCCTGGATGGCCAGGATTACG
T

BO18520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4423-PA 648 GstD6-RA 1..440 362..801 2200 100 Plus
CG12242-PA 651 GstD5-RA 296..612 12..328 1585 100 Plus
CG4181-PA 648 GstD2-RA 296..380 12..96 325 95.2 Plus
CG10045-PA 630 GstD1-RA 556..594 269..307 170 97.4 Plus
CG10045-PB 630 GstD1-RB 556..594 269..307 170 97.4 Plus
CG4181-PA 648 GstD2-RA 539..591 255..307 140 90.5 Plus
CG4181-PA 648 GstD2-RA 275..317 636..678 140 93 Plus
CG4371-PA 675 GstD7-RA 287..329 636..678 140 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstD6-RA 780 CG4423-RA 10..484 327..801 2375 100 Plus
GstD5-RA 840 CG12242-RA 327..643 12..328 1585 100 Plus
GstD2-RA 734 CG4181-RA 323..618 12..307 760 83.8 Plus
GstD5-RA 840 CG12242-RA 177..365 507..695 300 77.2 Plus
GstD6-RA 780 CG4423-RA 442..633 114..305 210 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12377137..12377611 327..801 2375 100 Plus
3R 32079331 3R 12376059..12376375 12..328 1585 100 Plus
3R 32079331 3R 12372293..12372588 12..307 760 83.8 Plus
3R 32079331 3R 12372102..12372331 466..695 415 78.7 Plus
3R 32079331 3R 12374570..12374749 134..313 405 81.7 Plus
3R 32079331 3R 12367978..12368196 307..89 390 78.5 Minus
3R 32079331 3R 12378659..12378991 466..795 370 74.8 Plus
3R 32079331 3R 12374297..12374464 506..673 300 78.6 Plus
3R 32079331 3R 12375909..12376097 507..695 300 77.2 Plus
3R 32079331 3R 12380141..12380348 467..674 260 75 Plus
3R 32079331 3R 12380452..12380633 133..314 250 75.8 Plus
3R 32079331 3R 12373499..12373672 134..307 240 75.9 Plus
3R 32079331 3R 12368235..12368436 695..494 230 74.3 Minus
3R 32079331 3R 12377569..12377760 114..305 210 74 Plus
3R 32079331 3R 12365229..12365398 675..506 205 74.7 Minus
3R 32079331 3R 12378974..12379103 133..262 200 76.9 Plus
Blast to na_te.dros performed on 2015-02-03 06:45:42 has no hits.

BO18520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:04 Download gff for BO18520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4423-PA 1..440 362..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:25 Download gff for BO18520.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..440 362..801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:16 Download gff for BO18520.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 10..484 327..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:16 Download gff for BO18520.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12376055..12376378 6..328 98 -> Plus
3R 12377139..12377611 329..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:25 Download gff for BO18520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8201777..8202100 6..328 98 -> Plus
arm_3R 8202861..8203333 329..801 100   Plus

BO18520.complete Sequence

1024 bp assembled on 2006-10-11

GenBank Submission: FJ634448

> BO18520.complete
GAAGTTATCAGTCGACATGGGAACTCTGTACGACAGCTTCGCCAAATACT
ACTATCCCCTTTTCCACACTGGAAAGCCCGGATCTGATGAGGACTTTAAG
AAGATCGAGAGCTCCTTCGAGTATCTGAATATCTTCCTGGAGGGCCAGAA
CTACGTGGCCGGTGACCACCTCACAGTGGCTGATATTGCCATCCTCTCCA
CCGTTTCCACTTTCGAAATCTTTGATTTCGACCTCAACAAGTACCCGAAT
GTGGCCAGGTGGTATGCCAACGCCAAGAAGGTGACTCCCGGATGGGAAGA
GAACTGGAAAGGTGCCGTGGAACTGAAGTGCACTAGACGGATTCCCCCAG
CCCTTCTGACGATGGATCTCTATAACATGTCTGGTTCCCCGAGCACCCGG
GCCGTTATGATGACCGCCAAAGCTGTGGGAGTCGAGTTCAACTCGATACA
AGTTAATACCTTTGTGGGGGAACAACTGGAGCCATGGTTTGTAAAGATAA
ACCCTCAGCACACGATTCCAACCCTGGTGGACAATTTATTCGTTATTTGG
GAAACTCGGGCCATTGTTGTCTACCTAGTGGAGCAGTACGGTAAGGATGA
TTCTCTGTACCCGAAGGATCCCCAGAAGCAAGCGCTGATCAACCAGCGTC
TGTACTTCGATATGGGCACCCTGTACGATGGCATTGCCAAGTACTTTTTC
CCACTGCTTCGGACGGGCAAACCCGGAACTCAGGAGAATCTTGAGAAACT
GAACGCTGCCTTCGATCTTCTCAACAACTTCCTGGATGGCCAGGATTACG
TGGCCGGCAATCAGCTTTCAGTGGCAGATATCGTTATATTGGCCACCGTT
TCCACAACCGAAATGGTTGACTTCGATTTAAAGAAGTTTCCCAACGTGGA
CAGATGGTATAAGAACGCCCAAAAAGTTACGCCGGGTTGGGACGAGAACT
TGGCAAGAATTCAAAGCGCCAAAAAATTTCTAGCCGAAAACTTAATAGAA
AAGTTAGCAAGCTTTCTAGACCAT

BO18520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
GstD6-RA 648 CG4423-PA 1..645 362..1006 3225 100 Plus
GstD5-RA 651 CG12242-PA 296..612 12..328 1585 100 Plus
GstD2-RA 648 CG4181-PA 296..591 12..307 760 83.8 Plus
GstD5-RA 651 CG12242-PA 146..589 507..950 390 72.5 Plus
GstD6-RA 648 CG4423-PA 398..589 114..305 210 74 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
GstD6-RA 780 CG4423-RA 10..689 327..1006 3400 100 Plus
GstD5-RA 840 CG12242-RA 327..643 12..328 1585 100 Plus
GstD2-RA 734 CG4181-RA 323..618 12..307 760 83.8 Plus
GstD5-RA 840 CG12242-RA 177..620 507..950 390 72.5 Plus
GstD6-RA 780 CG4423-RA 442..633 114..305 210 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12377137..12377816 327..1006 3400 100 Plus
3R 32079331 3R 12376059..12376375 12..328 1585 100 Plus
3R 32079331 3R 12372293..12372588 12..307 760 83.8 Plus
3R 32079331 3R 12378659..12379138 466..942 505 74.2 Plus
3R 32079331 3R 12372102..12372331 466..695 415 78.7 Plus
3R 32079331 3R 12374570..12374749 134..313 405 81.7 Plus
3R 32079331 3R 12367978..12368196 307..89 390 78.5 Minus
3R 32079331 3R 12375909..12376352 507..950 390 72.5 Plus
3R 32079331 3R 12374297..12374464 506..673 300 78.6 Plus
3R 32079331 3R 12380141..12380348 467..674 260 75 Plus
3R 32079331 3R 12380452..12380633 133..314 250 75.8 Plus
3R 32079331 3R 12373499..12373672 134..307 240 75.9 Plus
3R 32079331 3R 12368235..12368436 695..494 230 74.3 Minus
3R 32079331 3R 12377569..12377760 114..305 210 74 Plus
3R 32079331 3R 12365229..12365398 675..506 205 74.7 Minus
3R 32079331 3R 12378974..12379103 133..262 200 76.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:54 has no hits.

BO18520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:14 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..648 362..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:59 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..648 362..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:15 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..645 362..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:14 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 1..648 362..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:54 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
GstD6-RA 10..689 327..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:54 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12376064..12376378 17..328 99 -> Plus
3R 12377139..12377816 329..1008 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:15 Download gff for BO18520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8201786..8202100 17..328 99 -> Plus
arm_3R 8202861..8203538 329..1008 99   Plus

BO18520.pep Sequence

Translation from 16 to 1024

> BO18520.pep
MGTLYDSFAKYYYPLFHTGKPGSDEDFKKIESSFEYLNIFLEGQNYVAGD
HLTVADIAILSTVSTFEIFDFDLNKYPNVARWYANAKKVTPGWEENWKGA
VELKCTRRIPPALLTMDLYNMSGSPSTRAVMMTAKAVGVEFNSIQVNTFV
GEQLEPWFVKINPQHTIPTLVDNLFVIWETRAIVVYLVEQYGKDDSLYPK
DPQKQALINQRLYFDMGTLYDGIAKYFFPLLRTGKPGTQENLEKLNAAFD
LLNNFLDGQDYVAGNQLSVADIVILATVSTTEMVDFDLKKFPNVDRWYKN
AQKVTPGWDENLARIQSAKKFLAENLIEKLASFLDH

BO18520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstD6-PA 215 CG4423-PA 1..215 116..330 1118 100 Plus
GstD7-PA 224 CG4371-PA 4..213 116..324 760 68.6 Plus
GstD2-PA 215 CG4181-PA 1..204 116..319 700 63.2 Plus
GstD5-PA 216 CG12242-PA 1..196 116..311 695 64.8 Plus
GstD4-PA 215 CG11512-PA 1..196 116..311 689 63.8 Plus
GstD5-PA 216 CG12242-PA 101..204 1..104 563 100 Plus
GstD2-PA 215 CG4181-PA 101..204 1..104 439 75 Plus
GstD6-PA 215 CG4423-PA 101..196 1..96 354 64.6 Plus
GstD7-PA 224 CG4371-PA 105..200 1..96 326 62.5 Plus