Clone BO18521 Report

Search the DGRC for BO18521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCcap-RA
Protein status:BO18521.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO18521.5prime Sequence

497 bp (497 high quality bases) assembled on 2006-10-13

> BO18521.5prime
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAAGCAAGCTTTCTAGACC

BO18521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4910-PA 468 Ccap-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 714 CG4910-RB 71..535 17..481 2325 100 Plus
CCAP-RA 1249 CG4910-RA 606..1070 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22700761..22701058 481..184 1490 100 Minus
3R 32079331 3R 22701369..22701479 127..17 555 100 Minus
3R 32079331 3R 22701103..22701167 192..128 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:50:18 has no hits.

BO18521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:04 Download gff for BO18521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4910-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:24 Download gff for BO18521.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1073 17..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:57 Download gff for BO18521.5prime
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 606..1073 17..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:57 Download gff for BO18521.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22700757..22701050 192..485 99 <- Minus
3R 22701104..22701167 128..191 100 <- Minus
3R 22701369..22701479 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:24 Download gff for BO18521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18526479..18526772 192..485 99 <- Minus
arm_3R 18526826..18526889 128..191 100 <- Minus
arm_3R 18527091..18527201 17..127 100   Minus

BO18521.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ634449

> BO18521.complete
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAAGCAAGCTTTCTAGACCAT

BO18521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 468 CG4910-PB 1..465 17..481 2325 100 Plus
CCAP-RA 468 CG4910-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 714 CG4910-RB 71..535 17..481 2325 100 Plus
CCAP-RA 1249 CG4910-RA 606..1070 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22700761..22701058 481..184 1490 100 Minus
3R 32079331 3R 22701369..22701479 127..17 555 100 Minus
3R 32079331 3R 22701103..22701167 192..128 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:48 has no hits.

BO18521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:15 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:08 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1073 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:50 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1070 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:15 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1073 17..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:19 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 606..1070 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:19 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22700759..22701050 192..483 99 <- Minus
3R 22701104..22701167 128..191 100 <- Minus
3R 22701369..22701479 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:50 Download gff for BO18521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18526481..18526772 192..483 99 <- Minus
arm_3R 18526826..18526889 128..191 100 <- Minus
arm_3R 18527091..18527201 17..127 100   Minus

BO18521.pep Sequence

Translation from 16 to 499

> BO18521.pep
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESKASFLDH

BO18521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-PB 155 CG4910-PB 1..155 1..155 798 100 Plus
CCAP-PA 155 CG4910-PA 1..155 1..155 798 100 Plus