Clone Sequence Records
BO18521.5prime Sequence
497 bp (497 high quality bases) assembled on 2006-10-13
> BO18521.5prime
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAAGCAAGCTTTCTAGACC
BO18521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4910-PA | 468 | Ccap-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 714 | CG4910-RB | 71..535 | 17..481 | 2325 | 100 | Plus |
CCAP-RA | 1249 | CG4910-RA | 606..1070 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22700761..22701058 | 481..184 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 22701369..22701479 | 127..17 | 555 | 100 | Minus |
3R | 32079331 | 3R | 22701103..22701167 | 192..128 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:18 has no hits.
BO18521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:04 Download gff for
BO18521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4910-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:24 Download gff for
BO18521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1073 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:57 Download gff for
BO18521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCAP-RA | 606..1073 | 17..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:57 Download gff for
BO18521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22700757..22701050 | 192..485 | 99 | <- | Minus |
3R | 22701104..22701167 | 128..191 | 100 | <- | Minus |
3R | 22701369..22701479 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:24 Download gff for
BO18521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18526479..18526772 | 192..485 | 99 | <- | Minus |
arm_3R | 18526826..18526889 | 128..191 | 100 | <- | Minus |
arm_3R | 18527091..18527201 | 17..127 | 100 | | Minus |
BO18521.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ634449
> BO18521.complete
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAAGCAAGCTTTCTAGACCAT
BO18521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 468 | CG4910-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
CCAP-RA | 468 | CG4910-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 714 | CG4910-RB | 71..535 | 17..481 | 2325 | 100 | Plus |
CCAP-RA | 1249 | CG4910-RA | 606..1070 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22700761..22701058 | 481..184 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 22701369..22701479 | 127..17 | 555 | 100 | Minus |
3R | 32079331 | 3R | 22701103..22701167 | 192..128 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:48 has no hits.
BO18521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:15 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:08 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1073 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:50 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1070 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:15 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1073 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:19 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCAP-RA | 606..1070 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:19 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22700759..22701050 | 192..483 | 99 | <- | Minus |
3R | 22701104..22701167 | 128..191 | 100 | <- | Minus |
3R | 22701369..22701479 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:50 Download gff for
BO18521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18526481..18526772 | 192..483 | 99 | <- | Minus |
arm_3R | 18526826..18526889 | 128..191 | 100 | <- | Minus |
arm_3R | 18527091..18527201 | 17..127 | 100 | | Minus |
BO18521.pep Sequence
Translation from 16 to 499
> BO18521.pep
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESKASFLDH
BO18521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-PB | 155 | CG4910-PB | 1..155 | 1..155 | 798 | 100 | Plus |
CCAP-PA | 155 | CG4910-PA | 1..155 | 1..155 | 798 | 100 | Plus |