Clone Sequence Records
BO18523.3prime Sequence
823 bp (712 high quality bases) assembled on 2006-10-13
> BO18523.3prime
ATGGTCTAGAAAGCTTGCTCTACTTTTATCCACAAGGAGCACGTTCCTGG
CATCCTCCGCTGTCAGGTCCTTATCGCCCCAGCCCCACAGTTCGTGGCTA
CCGTCGCCAGTGCGGAGCACTCGTCGCTGGATCACGTCGGGAGCCACCGT
CTTCAGGTCGTAGGCCCAGCCGATCTTGGCGAACAAGTCGATGAAGGCCG
TCGTTATATTCAGGGAGTAGCAACCCCATTCGGCCGTCTTGTAGTCCCAC
GGAAACGCGTGATGGTAGTTGTGCCACCCCTCGCCAAAGGTGAAGGCCGA
TACAAAGGCATTCTGGGTAGGATTCATGGTCTTGTCGTATGGGCGATTTC
CGAATTTATGGGCCGCGCTGTTCACCAGCCAGGTCATGTTTAGCTGGAAG
CACCACCTGAACATGGTGGCCACAAACCAAGAGGAGGCCAGCGTCTCATT
CCAGTAAACCATTGGAATAACGGTGGGCAGAACGAAGCAGGCCAGCGGCA
TGAGGATATAATAGTGCTTTCGTTGGAACATCAAGATGGGATCGGCGCGC
AGGTCGGAGAGATCCAGTCCCCTTCCCTTTTCCTTAATATCCGGATGCTT
TTTGCAGAGCAGCCAGCCCACATGCGAGAAGAAAAATCCCCTGGTGGCGT
TGTGAGGATCTGCATCAGTTTCCGAGTATTTGTGGTGGACGCGATGGTCA
CGGGCCCAATGGTAGACGGCATCCTGAAAGGCGATCGTATTGAAGATGAC
CAGGAGCAGGCGCAGGGGCCACTTGGCCTTGTAGGTGCGATGCGCCATAA
ACGATGGGCACCGGCTGTAACGC
BO18523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5925-PA | 1086 | desat2-RA | 306..1083 | 796..19 | 3890 | 100 | Minus |
CG5887-PA | 1152 | desat1-RA | 412..521 | 753..644 | 300 | 90.9 | Minus |
CG5887-PC | 1152 | desat1-RC | 412..521 | 753..644 | 300 | 90.9 | Minus |
CG5887-PE | 1152 | desat1-RE | 412..521 | 753..644 | 300 | 90.9 | Minus |
CG5887-PB | 1152 | desat1-RB | 412..521 | 753..644 | 300 | 90.9 | Minus |
CG5887-PD | 1152 | desat1-RD | 412..521 | 753..644 | 300 | 90.9 | Minus |
CG5887-PA | 1152 | desat1-RA | 967..1020 | 198..145 | 195 | 94.4 | Minus |
CG5887-PC | 1152 | desat1-RC | 967..1020 | 198..145 | 195 | 94.4 | Minus |
CG5887-PE | 1152 | desat1-RE | 967..1020 | 198..145 | 195 | 94.4 | Minus |
CG5887-PB | 1152 | desat1-RB | 967..1020 | 198..145 | 195 | 94.4 | Minus |
CG5887-PD | 1152 | desat1-RD | 967..1020 | 198..145 | 195 | 94.4 | Minus |
CG7923-PA | 1068 | Fad2-RA | 346..422 | 732..656 | 185 | 89.6 | Minus |
CG5887-PA | 1152 | desat1-RA | 369..404 | 796..761 | 155 | 97.2 | Minus |
CG5887-PC | 1152 | desat1-RC | 369..404 | 796..761 | 155 | 97.2 | Minus |
CG5887-PE | 1152 | desat1-RE | 369..404 | 796..761 | 155 | 97.2 | Minus |
CG5887-PB | 1152 | desat1-RB | 369..404 | 796..761 | 155 | 97.2 | Minus |
CG5887-PD | 1152 | desat1-RD | 369..404 | 796..761 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 451..1256 | 823..19 | 3990 | 99.8 | Minus |
Desat1-RD | 1934 | CG5887-RD | 451..1127 | 820..145 | 1125 | 78.2 | Minus |
Desat1-RB | 1978 | CG5887-RB | 495..1171 | 820..145 | 1125 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12437444..12437756 | 331..19 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 12436764..12437071 | 823..517 | 1475 | 99.4 | Minus |
3R | 32079331 | 3R | 12437189..12437375 | 517..331 | 935 | 100 | Minus |
3R | 32079331 | 3R | 12446011..12446308 | 820..524 | 795 | 85.2 | Minus |
3R | 32079331 | 3R | 12446664..12446809 | 290..145 | 370 | 83.6 | Minus |
3R | 32079331 | 3R | 30186709..30186831 | 611..733 | 270 | 81.3 | Plus |
3L | 28110227 | 3L | 11023884..11023960 | 732..656 | 265 | 89.6 | Minus |
3R | 32079331 | 3R | 12446464..12446562 | 429..331 | 210 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:25 has no hits.
BO18523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:05 Download gff for
BO18523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5925-PA | 278..1086 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:26 Download gff for
BO18523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 451..1264 | 11..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:23 Download gff for
BO18523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 451..1264 | 11..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:23 Download gff for
BO18523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12436764..12437070 | 518..823 | 99 | -> | Minus |
3R | 12437189..12437374 | 332..517 | 100 | -> | Minus |
3R | 12437444..12437764 | 11..331 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:26 Download gff for
BO18523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8262486..8262792 | 518..823 | 99 | -> | Minus |
arm_3R | 8262911..8263096 | 332..517 | 100 | -> | Minus |
arm_3R | 8263166..8263486 | 11..331 | 98 | | Minus |
BO18523.5prime Sequence
781 bp (741 high quality bases) assembled on 2006-10-13
> BO18523.5prime
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATAC
BO18523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5925-PA | 1086 | desat2-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG5887-PA | 1152 | desat1-RA | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PC | 1152 | desat1-RC | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PE | 1152 | desat1-RE | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PB | 1152 | desat1-RB | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PD | 1152 | desat1-RD | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PA | 1152 | desat1-RA | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PC | 1152 | desat1-RC | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PE | 1152 | desat1-RE | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PB | 1152 | desat1-RB | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PD | 1152 | desat1-RD | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG7923-PA | 1068 | Fad2-RA | 346..422 | 386..462 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 170..938 | 13..781 | 3830 | 99.9 | Plus |
Desat1-RD | 1934 | CG5887-RD | 447..922 | 293..768 | 895 | 79.7 | Plus |
Desat1-RB | 1978 | CG5887-RB | 491..966 | 293..768 | 895 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12436733..12437071 | 263..601 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12436417..12436667 | 13..263 | 1240 | 99.6 | Plus |
3R | 32079331 | 3R | 12437189..12437369 | 601..781 | 905 | 100 | Plus |
3R | 32079331 | 3R | 12446007..12446308 | 293..594 | 865 | 85.8 | Plus |
3L | 28110227 | 3L | 11023789..11023960 | 291..462 | 275 | 77.3 | Plus |
3R | 32079331 | 3R | 30186709..30186831 | 507..385 | 270 | 81.3 | Minus |
3R | 32079331 | 3R | 12446464..12446543 | 689..768 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:24 has no hits.
BO18523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:06 Download gff for
BO18523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5925-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:25 Download gff for
BO18523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..938 | 13..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:36 Download gff for
BO18523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 170..938 | 13..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:36 Download gff for
BO18523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12436417..12436667 | 13..263 | 99 | -> | Plus |
3R | 12436734..12437070 | 264..600 | 100 | -> | Plus |
3R | 12437189..12437369 | 601..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:25 Download gff for
BO18523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8262139..8262389 | 13..263 | 99 | -> | Plus |
arm_3R | 8262456..8262792 | 264..600 | 100 | -> | Plus |
arm_3R | 8262911..8263091 | 601..781 | 100 | | Plus |
BO18523.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ634450
> BO18523.complete
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATACGACAAGACCATGAATCCTA
CCCAGAATGCCTTTGTATCGGCCTTCACCTTTGGCGAGGGGTGGCACAAC
TACCATCACGCGTTTCCGTGGGACTACAAGACGGCCGAATGGGGTTGCTA
CTCCCTGAATATAACGACGGCCTTCATCGACTTGTTCGCCAAGATCGGCT
GGGCCTACGACCTGAAGACGGTGGCTCCCGACGTGATCCAGCGACGAGTG
CTCCGCACTGGCGACGGTAGCCACGAACTGTGGGGCTGGGGCGATAAGGA
CCTGACAGCGGAGGATGCCAGGAACGTGCTCCTTGTGGATAAAAGTAGAG
CAAGCTTTCTAGACCAT
BO18523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1086 | CG5925-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Desat1-RD | 1152 | CG5887-PD | 340..1020 | 293..973 | 1155 | 78 | Plus |
Desat1-RB | 1152 | CG5887-PB | 340..1020 | 293..973 | 1155 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 170..1256 | 13..1099 | 5420 | 99.9 | Plus |
Desat1-RD | 1934 | CG5887-RD | 447..1127 | 293..973 | 1155 | 78 | Plus |
Desat1-RB | 1978 | CG5887-RB | 491..1171 | 293..973 | 1155 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12436733..12437071 | 263..601 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12437444..12437756 | 787..1099 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 12436417..12436667 | 13..263 | 1240 | 99.6 | Plus |
3R | 32079331 | 3R | 12437189..12437375 | 601..787 | 935 | 100 | Plus |
3R | 32079331 | 3R | 12446007..12446308 | 293..594 | 865 | 85.8 | Plus |
3R | 32079331 | 3R | 12446664..12446809 | 828..973 | 370 | 83.6 | Plus |
3L | 28110227 | 3L | 11023789..11023960 | 291..462 | 275 | 77.3 | Plus |
3R | 32079331 | 3R | 30186709..30186831 | 507..385 | 270 | 81.3 | Minus |
3R | 32079331 | 3R | 12446464..12446562 | 689..787 | 210 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:35:59 has no hits.
BO18523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:56 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 1..1086 | 17..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:32 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..1264 | 13..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:27 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 174..1256 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:56 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..1264 | 13..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:15 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 174..1256 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:15 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12437444..12437756 | 787..1101 | 99 | | Plus |
3R | 12436421..12436667 | 17..263 | 100 | -> | Plus |
3R | 12436734..12437070 | 264..600 | 100 | -> | Plus |
3R | 12437189..12437374 | 601..786 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:27 Download gff for
BO18523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8262143..8262389 | 17..263 | 100 | -> | Plus |
arm_3R | 8262456..8262792 | 264..600 | 100 | -> | Plus |
arm_3R | 8262911..8263096 | 601..786 | 100 | -> | Plus |
arm_3R | 8263166..8263478 | 787..1101 | 99 | | Plus |
BO18523.pep Sequence
Translation from 16 to 1117
> BO18523.pep
MAPYSRIYHQDKSSRETGVLFEDDAQTVDGDLTTDRFQLKRAEKRRLPLV
WRNIILFALVHLAALYGLHSIFTRAKLATTLFAAGLYIIGMLGVTAGAHR
LWAHRTYKAKWPLRLLLVIFNTIAFQDAVYHWARDHRVHHKYSETDADPH
NATRGFFFSHVGWLLCKKHPDIKEKGRGLDLSDLRADPILMFQRKHYYIL
MPLACFVLPTVIPMVYWNETLASSWFVATMFRWCFQLNMTWLVNSAAHKF
GNRPYDKTMNPTQNAFVSAFTFGEGWHNYHHAFPWDYKTAEWGCYSLNIT
TAFIDLFAKIGWAYDLKTVAPDVIQRRVLRTGDGSHELWGWGDKDLTAED
ARNVLLVDKSRASFLDH
BO18523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-PA | 361 | CG5925-PA | 1..361 | 1..361 | 1975 | 100 | Plus |
Desat1-PD | 383 | CG5887-PD | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PB | 383 | CG5887-PB | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PE | 383 | CG5887-PE | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PC | 383 | CG5887-PC | 38..380 | 17..359 | 1405 | 71.4 | Plus |