Clone BO18523 Report

Search the DGRC for BO18523

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdesat2-RA
Protein status:BO18523.pep: validated full length
Sequenced Size:1117

Clone Sequence Records

BO18523.3prime Sequence

823 bp (712 high quality bases) assembled on 2006-10-13

> BO18523.3prime
ATGGTCTAGAAAGCTTGCTCTACTTTTATCCACAAGGAGCACGTTCCTGG
CATCCTCCGCTGTCAGGTCCTTATCGCCCCAGCCCCACAGTTCGTGGCTA
CCGTCGCCAGTGCGGAGCACTCGTCGCTGGATCACGTCGGGAGCCACCGT
CTTCAGGTCGTAGGCCCAGCCGATCTTGGCGAACAAGTCGATGAAGGCCG
TCGTTATATTCAGGGAGTAGCAACCCCATTCGGCCGTCTTGTAGTCCCAC
GGAAACGCGTGATGGTAGTTGTGCCACCCCTCGCCAAAGGTGAAGGCCGA
TACAAAGGCATTCTGGGTAGGATTCATGGTCTTGTCGTATGGGCGATTTC
CGAATTTATGGGCCGCGCTGTTCACCAGCCAGGTCATGTTTAGCTGGAAG
CACCACCTGAACATGGTGGCCACAAACCAAGAGGAGGCCAGCGTCTCATT
CCAGTAAACCATTGGAATAACGGTGGGCAGAACGAAGCAGGCCAGCGGCA
TGAGGATATAATAGTGCTTTCGTTGGAACATCAAGATGGGATCGGCGCGC
AGGTCGGAGAGATCCAGTCCCCTTCCCTTTTCCTTAATATCCGGATGCTT
TTTGCAGAGCAGCCAGCCCACATGCGAGAAGAAAAATCCCCTGGTGGCGT
TGTGAGGATCTGCATCAGTTTCCGAGTATTTGTGGTGGACGCGATGGTCA
CGGGCCCAATGGTAGACGGCATCCTGAAAGGCGATCGTATTGAAGATGAC
CAGGAGCAGGCGCAGGGGCCACTTGGCCTTGTAGGTGCGATGCGCCATAA
ACGATGGGCACCGGCTGTAACGC

BO18523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5925-PA 1086 desat2-RA 306..1083 796..19 3890 100 Minus
CG5887-PA 1152 desat1-RA 412..521 753..644 300 90.9 Minus
CG5887-PC 1152 desat1-RC 412..521 753..644 300 90.9 Minus
CG5887-PE 1152 desat1-RE 412..521 753..644 300 90.9 Minus
CG5887-PB 1152 desat1-RB 412..521 753..644 300 90.9 Minus
CG5887-PD 1152 desat1-RD 412..521 753..644 300 90.9 Minus
CG5887-PA 1152 desat1-RA 967..1020 198..145 195 94.4 Minus
CG5887-PC 1152 desat1-RC 967..1020 198..145 195 94.4 Minus
CG5887-PE 1152 desat1-RE 967..1020 198..145 195 94.4 Minus
CG5887-PB 1152 desat1-RB 967..1020 198..145 195 94.4 Minus
CG5887-PD 1152 desat1-RD 967..1020 198..145 195 94.4 Minus
CG7923-PA 1068 Fad2-RA 346..422 732..656 185 89.6 Minus
CG5887-PA 1152 desat1-RA 369..404 796..761 155 97.2 Minus
CG5887-PC 1152 desat1-RC 369..404 796..761 155 97.2 Minus
CG5887-PE 1152 desat1-RE 369..404 796..761 155 97.2 Minus
CG5887-PB 1152 desat1-RB 369..404 796..761 155 97.2 Minus
CG5887-PD 1152 desat1-RD 369..404 796..761 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 451..1256 823..19 3990 99.8 Minus
Desat1-RD 1934 CG5887-RD 451..1127 820..145 1125 78.2 Minus
Desat1-RB 1978 CG5887-RB 495..1171 820..145 1125 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12437444..12437756 331..19 1565 100 Minus
3R 32079331 3R 12436764..12437071 823..517 1475 99.4 Minus
3R 32079331 3R 12437189..12437375 517..331 935 100 Minus
3R 32079331 3R 12446011..12446308 820..524 795 85.2 Minus
3R 32079331 3R 12446664..12446809 290..145 370 83.6 Minus
3R 32079331 3R 30186709..30186831 611..733 270 81.3 Plus
3L 28110227 3L 11023884..11023960 732..656 265 89.6 Minus
3R 32079331 3R 12446464..12446562 429..331 210 80.8 Minus
Blast to na_te.dros performed on 2015-02-12 17:50:25 has no hits.

BO18523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:05 Download gff for BO18523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5925-PA 278..1086 16..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:26 Download gff for BO18523.3prime
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 451..1264 11..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:23 Download gff for BO18523.3prime
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 451..1264 11..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:23 Download gff for BO18523.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12436764..12437070 518..823 99 -> Minus
3R 12437189..12437374 332..517 100 -> Minus
3R 12437444..12437764 11..331 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:26 Download gff for BO18523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8262486..8262792 518..823 99 -> Minus
arm_3R 8262911..8263096 332..517 100 -> Minus
arm_3R 8263166..8263486 11..331 98   Minus

BO18523.5prime Sequence

781 bp (741 high quality bases) assembled on 2006-10-13

> BO18523.5prime
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATAC

BO18523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5925-PA 1086 desat2-RA 1..765 17..781 3825 100 Plus
CG5887-PA 1152 desat1-RA 412..521 365..474 300 90.9 Plus
CG5887-PC 1152 desat1-RC 412..521 365..474 300 90.9 Plus
CG5887-PE 1152 desat1-RE 412..521 365..474 300 90.9 Plus
CG5887-PB 1152 desat1-RB 412..521 365..474 300 90.9 Plus
CG5887-PD 1152 desat1-RD 412..521 365..474 300 90.9 Plus
CG5887-PA 1152 desat1-RA 349..404 302..357 230 96.4 Plus
CG5887-PC 1152 desat1-RC 349..404 302..357 230 96.4 Plus
CG5887-PE 1152 desat1-RE 349..404 302..357 230 96.4 Plus
CG5887-PB 1152 desat1-RB 349..404 302..357 230 96.4 Plus
CG5887-PD 1152 desat1-RD 349..404 302..357 230 96.4 Plus
CG7923-PA 1068 Fad2-RA 346..422 386..462 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 170..938 13..781 3830 99.9 Plus
Desat1-RD 1934 CG5887-RD 447..922 293..768 895 79.7 Plus
Desat1-RB 1978 CG5887-RB 491..966 293..768 895 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12436733..12437071 263..601 1695 100 Plus
3R 32079331 3R 12436417..12436667 13..263 1240 99.6 Plus
3R 32079331 3R 12437189..12437369 601..781 905 100 Plus
3R 32079331 3R 12446007..12446308 293..594 865 85.8 Plus
3L 28110227 3L 11023789..11023960 291..462 275 77.3 Plus
3R 32079331 3R 30186709..30186831 507..385 270 81.3 Minus
3R 32079331 3R 12446464..12446543 689..768 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:15:24 has no hits.

BO18523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:06 Download gff for BO18523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5925-PA 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:25 Download gff for BO18523.5prime
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..938 13..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:36 Download gff for BO18523.5prime
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 170..938 13..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:36 Download gff for BO18523.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12436417..12436667 13..263 99 -> Plus
3R 12436734..12437070 264..600 100 -> Plus
3R 12437189..12437369 601..781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:25 Download gff for BO18523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8262139..8262389 13..263 99 -> Plus
arm_3R 8262456..8262792 264..600 100 -> Plus
arm_3R 8262911..8263091 601..781 100   Plus

BO18523.complete Sequence

1117 bp assembled on 2006-10-11

GenBank Submission: FJ634450

> BO18523.complete
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATACGACAAGACCATGAATCCTA
CCCAGAATGCCTTTGTATCGGCCTTCACCTTTGGCGAGGGGTGGCACAAC
TACCATCACGCGTTTCCGTGGGACTACAAGACGGCCGAATGGGGTTGCTA
CTCCCTGAATATAACGACGGCCTTCATCGACTTGTTCGCCAAGATCGGCT
GGGCCTACGACCTGAAGACGGTGGCTCCCGACGTGATCCAGCGACGAGTG
CTCCGCACTGGCGACGGTAGCCACGAACTGTGGGGCTGGGGCGATAAGGA
CCTGACAGCGGAGGATGCCAGGAACGTGCTCCTTGTGGATAAAAGTAGAG
CAAGCTTTCTAGACCAT

BO18523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1086 CG5925-PA 1..1083 17..1099 5415 100 Plus
Desat1-RD 1152 CG5887-PD 340..1020 293..973 1155 78 Plus
Desat1-RB 1152 CG5887-PB 340..1020 293..973 1155 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 170..1256 13..1099 5420 99.9 Plus
Desat1-RD 1934 CG5887-RD 447..1127 293..973 1155 78 Plus
Desat1-RB 1978 CG5887-RB 491..1171 293..973 1155 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12436733..12437071 263..601 1695 100 Plus
3R 32079331 3R 12437444..12437756 787..1099 1565 100 Plus
3R 32079331 3R 12436417..12436667 13..263 1240 99.6 Plus
3R 32079331 3R 12437189..12437375 601..787 935 100 Plus
3R 32079331 3R 12446007..12446308 293..594 865 85.8 Plus
3R 32079331 3R 12446664..12446809 828..973 370 83.6 Plus
3L 28110227 3L 11023789..11023960 291..462 275 77.3 Plus
3R 32079331 3R 30186709..30186831 507..385 270 81.3 Minus
3R 32079331 3R 12446464..12446562 689..787 210 80.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:35:59 has no hits.

BO18523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:56 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 1..1086 17..1102 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:32 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..1264 13..1107 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:27 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 174..1256 17..1101 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:56 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..1264 13..1107 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:15 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 174..1256 17..1101 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:15 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12437444..12437756 787..1101 99   Plus
3R 12436421..12436667 17..263 100 -> Plus
3R 12436734..12437070 264..600 100 -> Plus
3R 12437189..12437374 601..786 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:27 Download gff for BO18523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8262143..8262389 17..263 100 -> Plus
arm_3R 8262456..8262792 264..600 100 -> Plus
arm_3R 8262911..8263096 601..786 100 -> Plus
arm_3R 8263166..8263478 787..1101 99   Plus

BO18523.pep Sequence

Translation from 16 to 1117

> BO18523.pep
MAPYSRIYHQDKSSRETGVLFEDDAQTVDGDLTTDRFQLKRAEKRRLPLV
WRNIILFALVHLAALYGLHSIFTRAKLATTLFAAGLYIIGMLGVTAGAHR
LWAHRTYKAKWPLRLLLVIFNTIAFQDAVYHWARDHRVHHKYSETDADPH
NATRGFFFSHVGWLLCKKHPDIKEKGRGLDLSDLRADPILMFQRKHYYIL
MPLACFVLPTVIPMVYWNETLASSWFVATMFRWCFQLNMTWLVNSAAHKF
GNRPYDKTMNPTQNAFVSAFTFGEGWHNYHHAFPWDYKTAEWGCYSLNIT
TAFIDLFAKIGWAYDLKTVAPDVIQRRVLRTGDGSHELWGWGDKDLTAED
ARNVLLVDKSRASFLDH

BO18523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-PA 361 CG5925-PA 1..361 1..361 1975 100 Plus
Desat1-PD 383 CG5887-PD 38..380 17..359 1405 71.4 Plus
Desat1-PB 383 CG5887-PB 38..380 17..359 1405 71.4 Plus
Desat1-PE 383 CG5887-PE 38..380 17..359 1405 71.4 Plus
Desat1-PC 383 CG5887-PC 38..380 17..359 1405 71.4 Plus