Clone BO18524 Report

Search the DGRC for BO18524

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptAttD-RA
Protein status:BO18524.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO18524.3prime Sequence

575 bp (575 high quality bases) assembled on 2006-10-13

> BO18524.3prime
ATGGTCTAGAAAGCTTGCAAAATTATATCGCAAGTTAACTCCGGTGCCGA
AATCGGACTTGCCGCGCATCGGTCCCCTGAGGTGATGATTGGCACTTCCG
GTGGCGTTGAGGTTGAGATTGCCACTTGGAGAGGTATACAGATTTGCTGT
GCCAGAAGCCTGGACGGCGGTCATGCCGAACTGAGGAACCCTAGTGACCC
CCACTGCCGCCTGGTGACCCGTTCCAGTTTGCAAATTGAGTCCTCCGCCA
AACTGATCGTGCGATCGGCTATGACTGTGAAATGCAGTGGCATTCAGAGC
GGCGTTATTGCTCTGGAAGAGATTGGCTTGGGCTGCGGCAGTGGTAGTGC
TGCCCACGCCCTCGATGTGGCCATGCTGCAGTGAGAGTGCATGACCATTG
GCGTTGACCGCTCCATAAACTCCCTTGGTGACCGGACCCCCAGCGCCTGG
AGTGGAGGCGAATACTCCGGCTCGAGCATTGGCAAGATCATCACCGACCC
TTACTCCGCATTGGGCGGTTGCCGCTCCGCTCTTTGGGTTTCCTGAAGCC
TGACATTCCATGTCGACTGATAACT

BO18524.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7629-PA 546 AttD-RA 1..543 561..19 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..599 561..19 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625943 400..19 1910 100 Minus
3R 32079331 3R 17625324..17625484 561..401 805 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:04:01 has no hits.

BO18524.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for BO18524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7629-PA 1..546 15..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:43 Download gff for BO18524.3prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 10..561 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:51 Download gff for BO18524.3prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 10..561 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:51 Download gff for BO18524.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17625324..17625484 401..561 100 -> Minus
3R 17625562..17625952 10..400 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:43 Download gff for BO18524.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 401..561 100 -> Minus
arm_3R 13451284..13451674 10..400 98   Minus

BO18524.5prime Sequence

575 bp (575 high quality bases) assembled on 2006-10-13

> BO18524.5prime
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTGCAAGCTTTCTAGACC

BO18524.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7629-PA 546 AttD-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..599 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625943 178..559 1910 100 Plus
3R 32079331 3R 17625324..17625484 17..177 805 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:56:29 has no hits.

BO18524.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for BO18524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7629-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:36 Download gff for BO18524.5prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:34 Download gff for BO18524.5prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 17..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:34 Download gff for BO18524.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17625324..17625484 17..177 100 -> Plus
3R 17625562..17625952 178..568 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:36 Download gff for BO18524.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 17..177 100 -> Plus
arm_3R 13451284..13451674 178..568 98   Plus

BO18524.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ634451

> BO18524.complete
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTGCAAGCTTTCTAGACCAT

BO18524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 546 CG7629-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..599 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625943 178..559 1910 100 Plus
3R 32079331 3R 17625324..17625484 17..177 805 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:35:11 has no hits.

BO18524.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:57 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:34 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 17..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:31 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..599 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:57 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..608 17..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:26 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..599 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:26 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17625324..17625484 17..177 100 -> Plus
3R 17625562..17625943 178..561 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:31 Download gff for BO18524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 17..177 100 -> Plus
arm_3R 13451284..13451665 178..561 99   Plus

BO18524.pep Sequence

Translation from 16 to 577

> BO18524.pep
MECQASGNPKSGAATAQCGVRVGDDLANARAGVFASTPGAGGPVTKGVYG
AVNANGHALSLQHGHIEGVGSTTTAAAQANLFQSNNAALNATAFHSHSRS
HDQFGGGLNLQTGTGHQAAVGVTRVPQFGMTAVQASGTANLYTSPSGNLN
LNATGSANHHLRGPMRGKSDFGTGVNLRYNFASFLDH

BO18524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-PA 181 CG7629-PA 1..181 1..181 947 100 Plus
AttA-PA 221 CG10146-PA 39..220 6..181 196 33.3 Plus
AttB-PB 218 CG18372-PB 36..217 6..181 194 32.8 Plus
AttB-PA 218 CG18372-PA 36..217 6..181 194 32.8 Plus
AttC-PB 241 CG4740-PB 56..240 6..181 175 30.1 Plus