Clone Sequence Records
BO18524.3prime Sequence
575 bp (575 high quality bases) assembled on 2006-10-13
> BO18524.3prime
ATGGTCTAGAAAGCTTGCAAAATTATATCGCAAGTTAACTCCGGTGCCGA
AATCGGACTTGCCGCGCATCGGTCCCCTGAGGTGATGATTGGCACTTCCG
GTGGCGTTGAGGTTGAGATTGCCACTTGGAGAGGTATACAGATTTGCTGT
GCCAGAAGCCTGGACGGCGGTCATGCCGAACTGAGGAACCCTAGTGACCC
CCACTGCCGCCTGGTGACCCGTTCCAGTTTGCAAATTGAGTCCTCCGCCA
AACTGATCGTGCGATCGGCTATGACTGTGAAATGCAGTGGCATTCAGAGC
GGCGTTATTGCTCTGGAAGAGATTGGCTTGGGCTGCGGCAGTGGTAGTGC
TGCCCACGCCCTCGATGTGGCCATGCTGCAGTGAGAGTGCATGACCATTG
GCGTTGACCGCTCCATAAACTCCCTTGGTGACCGGACCCCCAGCGCCTGG
AGTGGAGGCGAATACTCCGGCTCGAGCATTGGCAAGATCATCACCGACCC
TTACTCCGCATTGGGCGGTTGCCGCTCCGCTCTTTGGGTTTCCTGAAGCC
TGACATTCCATGTCGACTGATAACT
BO18524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7629-PA | 546 | AttD-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..599 | 561..19 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625943 | 400..19 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 17625324..17625484 | 561..401 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:04:01 has no hits.
BO18524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for
BO18524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7629-PA | 1..546 | 15..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:43 Download gff for
BO18524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 10..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:51 Download gff for
BO18524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 10..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:51 Download gff for
BO18524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625324..17625484 | 401..561 | 100 | -> | Minus |
3R | 17625562..17625952 | 10..400 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:43 Download gff for
BO18524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 401..561 | 100 | -> | Minus |
arm_3R | 13451284..13451674 | 10..400 | 98 | | Minus |
BO18524.5prime Sequence
575 bp (575 high quality bases) assembled on 2006-10-13
> BO18524.5prime
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTGCAAGCTTTCTAGACC
BO18524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7629-PA | 546 | AttD-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..599 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625943 | 178..559 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 17625324..17625484 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:56:29 has no hits.
BO18524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for
BO18524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7629-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:36 Download gff for
BO18524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:34 Download gff for
BO18524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 17..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:34 Download gff for
BO18524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625324..17625484 | 17..177 | 100 | -> | Plus |
3R | 17625562..17625952 | 178..568 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:36 Download gff for
BO18524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 17..177 | 100 | -> | Plus |
arm_3R | 13451284..13451674 | 178..568 | 98 | | Plus |
BO18524.complete Sequence
577 bp assembled on 2006-10-11
GenBank Submission: FJ634451
> BO18524.complete
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTGCAAGCTTTCTAGACCAT
BO18524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 546 | CG7629-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..599 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625943 | 178..559 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 17625324..17625484 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:11 has no hits.
BO18524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:57 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:34 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:31 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..599 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:57 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..608 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:26 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..599 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:26 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625324..17625484 | 17..177 | 100 | -> | Plus |
3R | 17625562..17625943 | 178..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:31 Download gff for
BO18524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 17..177 | 100 | -> | Plus |
arm_3R | 13451284..13451665 | 178..561 | 99 | | Plus |
BO18524.pep Sequence
Translation from 16 to 577
> BO18524.pep
MECQASGNPKSGAATAQCGVRVGDDLANARAGVFASTPGAGGPVTKGVYG
AVNANGHALSLQHGHIEGVGSTTTAAAQANLFQSNNAALNATAFHSHSRS
HDQFGGGLNLQTGTGHQAAVGVTRVPQFGMTAVQASGTANLYTSPSGNLN
LNATGSANHHLRGPMRGKSDFGTGVNLRYNFASFLDH
BO18524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-PA | 181 | CG7629-PA | 1..181 | 1..181 | 947 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 39..220 | 6..181 | 196 | 33.3 | Plus |
AttB-PB | 218 | CG18372-PB | 36..217 | 6..181 | 194 | 32.8 | Plus |
AttB-PA | 218 | CG18372-PA | 36..217 | 6..181 | 194 | 32.8 | Plus |
AttC-PB | 241 | CG4740-PB | 56..240 | 6..181 | 175 | 30.1 | Plus |