Clone BO18525 Report

Search the DGRC for BO18525

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptlush-RA
Protein status:BO18525.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO18525.3prime Sequence

491 bp (491 high quality bases) assembled on 2006-10-13

> BO18525.3prime
ATGGTCTAGAAAGCTTGCAGGCCACATGAACTGCCCATCGGCGTTTTCAG
AGAAGCACTTGGCCGTCTGGTAGACCCTCTCGCAAGATTCCTTAAATTGT
TTATGCGTATCCCGACAAGCTTCAACGGATTTCCTGGACATCTCCATCAT
TTCCGGGGGAACCAGATGCGGAAGTTGGGCCAGCGCCTTGGGAGCGTTGA
ACTCCCCCTTTTTGTTCACAGTGCCCGCCATCAAGGACACACACTTTGTG
TAGCACATAAGATCCTGCGATGGCGGAAAGTTGAAATCACCCACGCGAAG
CCGATCGAGATCTTCTGTTTTGAGCTTAAACTTCGGCGCACAGCCACTGC
GGATCATGTCTAGCGAGGTCAAGAACTGCTCCATCGTCATGGCAACTGCA
GGATCGGGTAGCAGGAGTACCAGCACTTGCAGGACGATCGCGAAAACAGC
GGAAGAGCGTCGTTTCCAATGCTTCATGTCGACTGATAACT

BO18525.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8807-PA 462 lush-RA 1..459 477..19 2270 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..670 478..19 2285 99.8 Minus
lush-RA 963 CG8807-RA 224..683 478..19 2285 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 256..478 1115 100 Plus
3L 28110227 3L 19604820..19604975 101..256 750 98.7 Plus
3L 28110227 3L 19604678..19604763 19..104 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:23 has no hits.

BO18525.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for BO18525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8807-PA 1..462 15..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:55 Download gff for BO18525.3prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 15..486 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:24 Download gff for BO18525.3prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 15..486 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:24 Download gff for BO18525.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19604674..19604763 15..104 97 <- Plus
3L 19604824..19604974 105..255 99 <- Plus
3L 19605030..19605260 256..486 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:55 Download gff for BO18525.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597774..19597863 15..104 97 <- Plus
arm_3L 19597924..19598074 105..255 99 <- Plus
arm_3L 19598130..19598360 256..486 98   Plus

BO18525.5prime Sequence

491 bp (491 high quality bases) assembled on 2006-10-13

> BO18525.5prime
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTGCAAGCTTTCTAGACC

BO18525.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8807-PA 462 lush-RA 1..459 17..475 2270 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..670 16..475 2285 99.8 Plus
lush-RA 963 CG8807-RA 224..683 16..475 2285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 238..16 1115 100 Minus
3L 28110227 3L 19604820..19604975 393..238 750 98.7 Minus
3L 28110227 3L 19604678..19604763 475..390 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:02 has no hits.

BO18525.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:08 Download gff for BO18525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8807-PA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:05 Download gff for BO18525.5prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 8..479 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:37 Download gff for BO18525.5prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 8..479 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:37 Download gff for BO18525.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19604674..19604763 390..479 97 <- Minus
3L 19604824..19604974 239..389 99 <- Minus
3L 19605030..19605260 8..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:05 Download gff for BO18525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597774..19597863 390..479 97 <- Minus
arm_3L 19597924..19598074 239..389 99 <- Minus
arm_3L 19598130..19598360 8..238 98   Minus

BO18525.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ634452

> BO18525.complete
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTGCAAGCTTTCTAGACCAT

BO18525.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 462 CG8807-PB 1..459 17..475 2280 99.8 Plus
lush-RA 462 CG8807-PA 1..459 17..475 2280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..670 16..475 2285 99.8 Plus
lush-RA 963 CG8807-RA 224..683 16..475 2285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 238..16 1115 100 Minus
3L 28110227 3L 19604820..19604975 393..238 750 98.7 Minus
3L 28110227 3L 19604678..19604763 475..390 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:01 has no hits.

BO18525.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:58 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:36 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 8..479 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:50 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 225..683 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:58 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..686 8..479 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:08 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 225..683 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:08 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19604676..19604763 390..477 97 <- Minus
3L 19604824..19604974 239..389 99 <- Minus
3L 19605030..19605251 17..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:50 Download gff for BO18525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597776..19597863 390..477 97 <- Minus
arm_3L 19597924..19598074 239..389 99 <- Minus
arm_3L 19598130..19598351 17..238 100   Minus

BO18525.pep Sequence

Translation from 16 to 493

> BO18525.pep
MKHWKRRSSAVFAIVLQVLVLLLPDPAVAMTMEQFLTSLDMIRSGCAPKF
KLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALA
QLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQF
MWPASFLDH

BO18525.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
lush-PB 153 CG8807-PB 1..153 1..153 810 100 Plus
lush-PA 153 CG8807-PA 1..153 1..153 810 100 Plus
Obp19a-PC 146 CG11748-PC 17..139 23..145 148 28.6 Plus