Clone Sequence Records
BO18525.3prime Sequence
491 bp (491 high quality bases) assembled on 2006-10-13
> BO18525.3prime
ATGGTCTAGAAAGCTTGCAGGCCACATGAACTGCCCATCGGCGTTTTCAG
AGAAGCACTTGGCCGTCTGGTAGACCCTCTCGCAAGATTCCTTAAATTGT
TTATGCGTATCCCGACAAGCTTCAACGGATTTCCTGGACATCTCCATCAT
TTCCGGGGGAACCAGATGCGGAAGTTGGGCCAGCGCCTTGGGAGCGTTGA
ACTCCCCCTTTTTGTTCACAGTGCCCGCCATCAAGGACACACACTTTGTG
TAGCACATAAGATCCTGCGATGGCGGAAAGTTGAAATCACCCACGCGAAG
CCGATCGAGATCTTCTGTTTTGAGCTTAAACTTCGGCGCACAGCCACTGC
GGATCATGTCTAGCGAGGTCAAGAACTGCTCCATCGTCATGGCAACTGCA
GGATCGGGTAGCAGGAGTACCAGCACTTGCAGGACGATCGCGAAAACAGC
GGAAGAGCGTCGTTTCCAATGCTTCATGTCGACTGATAACT
BO18525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8807-PA | 462 | lush-RA | 1..459 | 477..19 | 2270 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..670 | 478..19 | 2285 | 99.8 | Minus |
lush-RA | 963 | CG8807-RA | 224..683 | 478..19 | 2285 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 256..478 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 19604820..19604975 | 101..256 | 750 | 98.7 | Plus |
3L | 28110227 | 3L | 19604678..19604763 | 19..104 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:23 has no hits.
BO18525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:07 Download gff for
BO18525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8807-PA | 1..462 | 15..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:55 Download gff for
BO18525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 15..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:24 Download gff for
BO18525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 15..486 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:24 Download gff for
BO18525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604674..19604763 | 15..104 | 97 | <- | Plus |
3L | 19604824..19604974 | 105..255 | 99 | <- | Plus |
3L | 19605030..19605260 | 256..486 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:55 Download gff for
BO18525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597774..19597863 | 15..104 | 97 | <- | Plus |
arm_3L | 19597924..19598074 | 105..255 | 99 | <- | Plus |
arm_3L | 19598130..19598360 | 256..486 | 98 | | Plus |
BO18525.5prime Sequence
491 bp (491 high quality bases) assembled on 2006-10-13
> BO18525.5prime
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTGCAAGCTTTCTAGACC
BO18525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8807-PA | 462 | lush-RA | 1..459 | 17..475 | 2270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..670 | 16..475 | 2285 | 99.8 | Plus |
lush-RA | 963 | CG8807-RA | 224..683 | 16..475 | 2285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 238..16 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 19604820..19604975 | 393..238 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 19604678..19604763 | 475..390 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:02 has no hits.
BO18525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:08 Download gff for
BO18525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8807-PA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:05 Download gff for
BO18525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 8..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:37 Download gff for
BO18525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 8..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:37 Download gff for
BO18525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604674..19604763 | 390..479 | 97 | <- | Minus |
3L | 19604824..19604974 | 239..389 | 99 | <- | Minus |
3L | 19605030..19605260 | 8..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:05 Download gff for
BO18525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597774..19597863 | 390..479 | 97 | <- | Minus |
arm_3L | 19597924..19598074 | 239..389 | 99 | <- | Minus |
arm_3L | 19598130..19598360 | 8..238 | 98 | | Minus |
BO18525.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ634452
> BO18525.complete
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTGCAAGCTTTCTAGACCAT
BO18525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 462 | CG8807-PB | 1..459 | 17..475 | 2280 | 99.8 | Plus |
lush-RA | 462 | CG8807-PA | 1..459 | 17..475 | 2280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..670 | 16..475 | 2285 | 99.8 | Plus |
lush-RA | 963 | CG8807-RA | 224..683 | 16..475 | 2285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 238..16 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 19604820..19604975 | 393..238 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 19604678..19604763 | 475..390 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:01 has no hits.
BO18525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:58 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:36 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 8..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:50 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 225..683 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:58 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..686 | 8..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:08 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 225..683 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:08 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604676..19604763 | 390..477 | 97 | <- | Minus |
3L | 19604824..19604974 | 239..389 | 99 | <- | Minus |
3L | 19605030..19605251 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:50 Download gff for
BO18525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597776..19597863 | 390..477 | 97 | <- | Minus |
arm_3L | 19597924..19598074 | 239..389 | 99 | <- | Minus |
arm_3L | 19598130..19598351 | 17..238 | 100 | | Minus |
BO18525.pep Sequence
Translation from 16 to 493
> BO18525.pep
MKHWKRRSSAVFAIVLQVLVLLLPDPAVAMTMEQFLTSLDMIRSGCAPKF
KLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALA
QLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQF
MWPASFLDH
BO18525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-PB | 153 | CG8807-PB | 1..153 | 1..153 | 810 | 100 | Plus |
lush-PA | 153 | CG8807-PA | 1..153 | 1..153 | 810 | 100 | Plus |
Obp19a-PC | 146 | CG11748-PC | 17..139 | 23..145 | 148 | 28.6 | Plus |