Clone Sequence Records
BO18526.3prime Sequence
821 bp (697 high quality bases) assembled on 2006-10-13
> BO18526.3prime
ATGGTCTAGAAAGCTTGCAAGTGTTGGTAGATTCCCTTGGGAAGGATTTG
TCTCCGTGGGTACATCGGTAGCGACTTTCGCGATTTCGTTATTGATCTTC
TGACTAAGTTCTTTCAGAAGTGTTAGATATTTGTTACGGTAAGTGTTCCT
GACGTTGGCTTCCTGAAACTGATTGGCGGCAGGTGGGGCGCTATCCTTAC
TAGAACGTTTCTTACACGGCTTTGTGGACTTTCGAGTGTTTTGCAGTTGC
CCATTCAATTCCAAAAGTCTGCGGTTCACAGTATTTAGCTCGAGCTCTAA
ATCGAGGTTTAACTGTCGTACTTTGATAATATCCGTTTTTCTGGCCTCTA
TTTCTTTCATCAAGTATATGGAATGGTTCCGGAGAAGTAAACTATTGTTC
TGCTCCGTTAGTAACCTCTGTTGCAGGGCCTTGAGCGCACTTTGATTGGA
TCCTTGATTTTTTTCTTTTGCCGGGAAATCATCTAGTCCTTTATTGAAAG
GAATATTATTCAAGTCAATGGAAGAGCTTTTTAGTGATTTGGACCTATTG
ATTGGATAATCATCCAGCGGCAAATCAGAAATATCGATATCCATTATATA
ATCGCCCTTTTTCGCATCTTTCAGAGCTACATCATCTTTGGCTATTTTGG
CCTGTGTCTCATCATTCTTGGGAGCAACATTTTTCAGAGATGCACTTTTC
GTAGAATCACTTTTCAGGTGCATAGCTGAATCGAGTTGTTGCTCACTATC
GCAGCTTGCCACTGTTAAAAGCAGCAGTAAAATTGGAGAGCATAATAAAA
ATCTGGTTCATGTCGACTGAT
BO18526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-P1 | 795 | Acp26Aa-RA | 11..792 | 800..19 | 3885 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-RA | 958 | CG8982-RA | 21..817 | 816..19 | 3935 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5893024..5893786 | 19..781 | 3785 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:07:01 has no hits.
BO18526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:09 Download gff for
BO18526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-P1 | 1..795 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:53 Download gff for
BO18526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 17..825 | 11..821 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:39 Download gff for
BO18526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 17..825 | 11..821 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:39 Download gff for
BO18526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5893019..5893781 | 14..776 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:53 Download gff for
BO18526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5893019..5893781 | 14..776 | 99 | <- | Plus |
BO18526.5prime Sequence
796 bp (729 high quality bases) assembled on 2006-10-13
> BO18526.5prime
GAAGTTATCAGTCGACATGAACCAGATTTTATTATGCTCTCCAATTTTAC
TGCTGCTTTTTACAGTGGCAAGCTGCGATAGTGAGCAACAACTCGATTCA
GCTATGCACCTGAAAAGTGATTCTACGAAAAGTGCATCTCTGAAAAATGT
TGCTCCCAAGAATGATGAGACACAGGCCAAAATAGCCAAAGATGATGTAG
CTCTGAAAGATGCGAAAAAGGGCGATTATATAATGGATATCGATATTTCT
GATTTGCCGCTGGATGATTATCCAATCAATAGGTCCAAATCACTAAAAAG
CTCTTCCATTGACTTGAATAATATTCCTTTCAATAAAGGACTAGATGATT
TCCCGGCAAAAGAAAAAAATCAAGGATCCAATCAAAGTGCGCTCAAGGCC
CTGCAACAGAGGTTACTAACGGAGCAGAACAATAGTTTACTTCTCCGGAA
CCATTCCATATACTTGATGAAAGAAATAGAGGCCAGAAAAACGGATATTA
TCAAAGTACGACAGTTAAACCTCGATTTAGAGCTCGAGCTAAATACTGTG
AACCGCAGACTTTTGGAATTGAATGGGCAACTGCAAAACACTCGAAAGTC
CACAAAGCCGTGTAAGAAACGTTCTAGTAAGGATAGCGCCCCACCTGCCG
CCAATCAGTTTCAGGAAGCCAACGTCAGGAACACTTACCGTAACAAATAT
CTAACACTTCTGAAAGAACTTAGTCAGAAGATCAATAACGAAATCGCGAA
AGTCGCTACCGATGTACCCACGGAGACAAATCCTTTCCAAGGGAAT
BO18526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-P1 | 795 | Acp26Aa-RA | 1..780 | 17..796 | 3875 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-RA | 958 | CG8982-RA | 21..805 | 12..796 | 3895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5893036..5893786 | 796..46 | 3725 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:42 has no hits.
BO18526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:09 Download gff for
BO18526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-P1 | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:02 Download gff for
BO18526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 18..805 | 8..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:55 Download gff for
BO18526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 18..805 | 8..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:55 Download gff for
BO18526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5893036..5893781 | 51..796 | 99 | <- | Minus |
| 2L | 5893838..5893879 | 8..50 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:02 Download gff for
BO18526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5893036..5893781 | 51..796 | 99 | <- | Minus |
| arm_2L | 5893838..5893879 | 8..50 | 93 | | Minus |
BO18526.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ634453
> BO18526.complete
GAAGTTATCAGTCGACATGAACCAGATTTTATTATGCTCTCCAATTTTAC
TGCTGCTTTTTACAGTGGCAAGCTGCGATAGTGAGCAACAACTCGATTCA
GCTATGCACCTGAAAAGTGATTCTACGAAAAGTGCATCTCTGAAAAATGT
TGCTCCCAAGAATGATGAGACACAGGCCAAAATAGCCAAAGATGATGTAG
CTCTGAAAGATGCGAAAAAGGGCGATTATATAATGGATATCGATATTTCT
GATTTGCCGCTGGATGATTATCCAATCAATAGGTCCAAATCACTAAAAAG
CTCTTCCATTGACTTGAATAATATTCCTTTCAATAAAGGACTAGATGATT
TCCCGGCAAAAGAAAAAAATCAAGGATCCAATCAAAGTGCGCTCAAGGCC
CTGCAACAGAGGTTACTAACGGAGCAGAACAATAGTTTACTTCTCCGGAA
CCATTCCATATACTTGATGAAAGAAATAGAGGCCAGAAAAACGGATATTA
TCAAAGTACGACAGTTAAACCTCGATTTAGAGCTCGAGCTAAATACTGTG
AACCGCAGACTTTTGGAATTGAATGGGCAACTGCAAAACACTCGAAAGTC
CACAAAGCCGTGTAAGAAACGTTCTAGTAAGGATAGCGCCCCACCTGCCG
CCAATCAGTTTCAGGAAGCCAACGTCAGGAACACTTACCGTAACAAATAT
CTAACACTTCTGAAAGAACTTAGTCAGAAGATCAATAACGAAATCGCGAA
AGTCGCTACCGATGTACCCACGGAGACAAATCCTTCCCAAGGGAATCTAC
CAACACTTGCAAGCTTTCTAGACCAT
BO18526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-RA | 795 | CG8982-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-RA | 958 | CG8982-RA | 21..817 | 12..808 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5893024..5893786 | 808..46 | 3800 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:17:39 has no hits.
BO18526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:01 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:37 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 18..825 | 8..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:24 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 26..817 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:01 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 18..825 | 8..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:07 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 26..817 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:07 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5893022..5893781 | 51..810 | 99 | <- | Minus |
| 2L | 5893838..5893871 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:24 Download gff for
BO18526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5893022..5893781 | 51..810 | 99 | <- | Minus |
| arm_2L | 5893838..5893871 | 17..50 | 100 | | Minus |
BO18526.pep Sequence
Translation from 16 to 826
> BO18526.pep
MNQILLCSPILLLLFTVASCDSEQQLDSAMHLKSDSTKSASLKNVAPKND
ETQAKIAKDDVALKDAKKGDYIMDIDISDLPLDDYPINRSKSLKSSSIDL
NNIPFNKGLDDFPAKEKNQGSNQSALKALQQRLLTEQNNSLLLRNHSIYL
MKEIEARKTDIIKVRQLNLDLELELNTVNRRLLELNGQLQNTRKSTKPCK
KRSSKDSAPPAANQFQEANVRNTYRNKYLTLLKELSQKINNEIAKVATDV
PTETNPSQGNLPTLASFLDH
BO18526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-PA | 264 | CG8982-PA | 1..264 | 1..264 | 1323 | 100 | Plus |
