Clone Sequence Records
BO18527.5prime Sequence
455 bp (455 high quality bases) assembled on 2006-10-13
> BO18527.5prime
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACGCAAGCTTTCT
AGACC
BO18527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9048-PA | 426 | Vm26Aa-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
CG9271-PA | 360 | Vm34Ca-RA | 208..317 | 230..339 | 375 | 93.6 | Plus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 245..277 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..504 | 17..439 | 2115 | 100 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 82..504 | 17..439 | 2115 | 100 | Plus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 230..339 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959837..5960259 | 439..17 | 2115 | 100 | Minus |
2L | 23513712 | 2L | 13411269..13411378 | 339..230 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957432..5957527 | 245..340 | 255 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:58:12 has no hits.
BO18527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:10 Download gff for
BO18527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9048-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:31 Download gff for
BO18527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 9..450 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:01 Download gff for
BO18527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 9..450 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:01 Download gff for
BO18527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959828..5960267 | 9..450 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:31 Download gff for
BO18527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959828..5960267 | 9..450 | 97 | | Minus |
BO18527.3prime Sequence
455 bp (455 high quality bases) assembled on 2006-10-13
> BO18527.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTAGCCATAGGTCTGGGGCACGTAGG
CGCTGTACAGCTGCTGCTGGTGCTGGGGCACGCCGTAGTTGGGGGCGACG
TAGGTGGCCACCGGGGAGGAGTAGGCGCCGGCGGATCCGTAGCTGGGAGC
TGGAGCGCTGCATGGCACGGGGGCAAGGTTGGGCTGGCAGCTGAACAGGT
AGTTCTTGGGGCAGGGAGGAGCTGGGATGCTGGAGCCGCCATAGCCGCCG
GAGCTGCCGCCGTAGGCAGACTTACGGAGACGGGTCAGGTCACCGAATCC
CTGTCCGGTCACTCCCTCCAGCTCTCCGTCCTGGGTGGTCACCGAGGAGC
CAGTGGAGCCGGTGGCCGAAGCCACGTTGGTGGGCGAAGCCAGAGCGGCG
GCGGCGAAGGCGACCAGAGCGATGCACACGAAGGATTTCATGTCGACTGA
TAACT
BO18527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9048-PA | 426 | Vm26Aa-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
CG9271-PA | 360 | Vm34Ca-RA | 208..317 | 228..119 | 375 | 93.6 | Minus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 213..181 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..504 | 441..19 | 2115 | 100 | Minus |
Vm26Aa-RA | 641 | CG9048-RA | 82..504 | 441..19 | 2115 | 100 | Minus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 228..119 | 445 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959837..5960259 | 19..441 | 2115 | 100 | Plus |
2L | 23513712 | 2L | 13411269..13411378 | 119..228 | 445 | 93.6 | Plus |
2L | 23513712 | 2L | 5957432..5957527 | 213..118 | 255 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:48 has no hits.
BO18527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:09 Download gff for
BO18527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9048-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:04 Download gff for
BO18527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 8..449 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:09 Download gff for
BO18527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 8..449 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:09 Download gff for
BO18527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959828..5960267 | 8..449 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:04 Download gff for
BO18527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959828..5960267 | 8..449 | 97 | | Plus |
BO18527.complete Sequence
457 bp assembled on 2006-10-11
GenBank Submission: FJ634454
> BO18527.complete
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACGCAAGCTTTCT
AGACCAT
BO18527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 426 | CG9048-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
Vm26Aa-RA | 426 | CG9048-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Vm34Ca-RA | 360 | CG9271-PA | 208..317 | 230..339 | 445 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..504 | 17..439 | 2115 | 100 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 82..504 | 17..439 | 2115 | 100 | Plus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 230..339 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959837..5960259 | 439..17 | 2115 | 100 | Minus |
2L | 23513712 | 2L | 13411269..13411378 | 339..230 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957432..5957527 | 245..340 | 255 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:24 has no hits.
BO18527.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:02 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:39 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 9..450 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:48 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 82..504 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:02 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..513 | 9..450 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:21 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 82..504 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:21 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959835..5960259 | 17..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:48 Download gff for
BO18527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959835..5960259 | 17..441 | 99 | | Minus |
BO18527.pep Sequence
Translation from 16 to 457
> BO18527.pep
MKSFVCIALVAFAAAALASPTNVASATGSTGSSVTTQDGELEGVTGQGFG
DLTRLRKSAYGGSSGGYGGSSIPAPPCPKNYLFSCQPNLAPVPCSAPAPS
YGSAGAYSSPVATYVAPNYGVPQHQQQLYSAYVPQTYGYQYASFLDH
BO18527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-PB | 141 | CG9048-PB | 1..141 | 1..141 | 746 | 100 | Plus |
Vm26Aa-PA | 141 | CG9048-PA | 1..141 | 1..141 | 746 | 100 | Plus |
Vm34Ca-PA | 119 | CG9271-PA | 69..112 | 71..114 | 218 | 88.6 | Plus |
Vm26Ab-PB | 168 | CG9046-PB | 116..163 | 70..117 | 208 | 77.1 | Plus |
Vm26Ab-PA | 168 | CG9046-PA | 116..163 | 70..117 | 208 | 77.1 | Plus |