Clone BO18527 Report

Search the DGRC for BO18527

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptVm26Aa-RA
Protein status:BO18527.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO18527.5prime Sequence

455 bp (455 high quality bases) assembled on 2006-10-13

> BO18527.5prime
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACGCAAGCTTTCT
AGACC

BO18527.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9048-PA 426 Vm26Aa-RA 1..423 17..439 2115 100 Plus
CG9271-PA 360 Vm34Ca-RA 208..317 230..339 375 93.6 Plus
CG9046-PA 507 Vm26Ab-RA 367..399 245..277 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..504 17..439 2115 100 Plus
Vm26Aa-RA 641 CG9048-RA 82..504 17..439 2115 100 Plus
Vm34Ca-RA 491 CG9271-RA 254..363 230..339 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959837..5960259 439..17 2115 100 Minus
2L 23513712 2L 13411269..13411378 339..230 445 93.6 Minus
2L 23513712 2L 5957432..5957527 245..340 255 84.4 Plus
Blast to na_te.dros performed on 2015-01-30 17:58:12 has no hits.

BO18527.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:10 Download gff for BO18527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9048-PA 1..426 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:31 Download gff for BO18527.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 9..450 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:01 Download gff for BO18527.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 9..450 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:01 Download gff for BO18527.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5959828..5960267 9..450 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:31 Download gff for BO18527.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959828..5960267 9..450 97   Minus

BO18527.3prime Sequence

455 bp (455 high quality bases) assembled on 2006-10-13

> BO18527.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTAGCCATAGGTCTGGGGCACGTAGG
CGCTGTACAGCTGCTGCTGGTGCTGGGGCACGCCGTAGTTGGGGGCGACG
TAGGTGGCCACCGGGGAGGAGTAGGCGCCGGCGGATCCGTAGCTGGGAGC
TGGAGCGCTGCATGGCACGGGGGCAAGGTTGGGCTGGCAGCTGAACAGGT
AGTTCTTGGGGCAGGGAGGAGCTGGGATGCTGGAGCCGCCATAGCCGCCG
GAGCTGCCGCCGTAGGCAGACTTACGGAGACGGGTCAGGTCACCGAATCC
CTGTCCGGTCACTCCCTCCAGCTCTCCGTCCTGGGTGGTCACCGAGGAGC
CAGTGGAGCCGGTGGCCGAAGCCACGTTGGTGGGCGAAGCCAGAGCGGCG
GCGGCGAAGGCGACCAGAGCGATGCACACGAAGGATTTCATGTCGACTGA
TAACT

BO18527.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9048-PA 426 Vm26Aa-RA 1..423 441..19 2115 100 Minus
CG9271-PA 360 Vm34Ca-RA 208..317 228..119 375 93.6 Minus
CG9046-PA 507 Vm26Ab-RA 367..399 213..181 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..504 441..19 2115 100 Minus
Vm26Aa-RA 641 CG9048-RA 82..504 441..19 2115 100 Minus
Vm34Ca-RA 491 CG9271-RA 254..363 228..119 445 93.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959837..5960259 19..441 2115 100 Plus
2L 23513712 2L 13411269..13411378 119..228 445 93.6 Plus
2L 23513712 2L 5957432..5957527 213..118 255 84.4 Minus
Blast to na_te.dros performed on 2015-02-12 03:58:48 has no hits.

BO18527.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:09 Download gff for BO18527.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9048-PA 1..426 15..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:04 Download gff for BO18527.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 8..449 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:09 Download gff for BO18527.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 8..449 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:09 Download gff for BO18527.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5959828..5960267 8..449 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:04 Download gff for BO18527.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959828..5960267 8..449 97   Plus

BO18527.complete Sequence

457 bp assembled on 2006-10-11

GenBank Submission: FJ634454

> BO18527.complete
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACGCAAGCTTTCT
AGACCAT

BO18527.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 426 CG9048-PB 1..423 17..439 2115 100 Plus
Vm26Aa-RA 426 CG9048-PA 1..423 17..439 2115 100 Plus
Vm34Ca-RA 360 CG9271-PA 208..317 230..339 445 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..504 17..439 2115 100 Plus
Vm26Aa-RA 641 CG9048-RA 82..504 17..439 2115 100 Plus
Vm34Ca-RA 491 CG9271-RA 254..363 230..339 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959837..5960259 439..17 2115 100 Minus
2L 23513712 2L 13411269..13411378 339..230 445 93.6 Minus
2L 23513712 2L 5957432..5957527 245..340 255 84.4 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:24 has no hits.

BO18527.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:02 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 1..426 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:39 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 9..450 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:48 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 82..504 17..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:02 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..513 9..450 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:21 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 82..504 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:21 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5959835..5960259 17..441 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:48 Download gff for BO18527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959835..5960259 17..441 99   Minus

BO18527.pep Sequence

Translation from 16 to 457

> BO18527.pep
MKSFVCIALVAFAAAALASPTNVASATGSTGSSVTTQDGELEGVTGQGFG
DLTRLRKSAYGGSSGGYGGSSIPAPPCPKNYLFSCQPNLAPVPCSAPAPS
YGSAGAYSSPVATYVAPNYGVPQHQQQLYSAYVPQTYGYQYASFLDH

BO18527.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-PB 141 CG9048-PB 1..141 1..141 746 100 Plus
Vm26Aa-PA 141 CG9048-PA 1..141 1..141 746 100 Plus
Vm34Ca-PA 119 CG9271-PA 69..112 71..114 218 88.6 Plus
Vm26Ab-PB 168 CG9046-PB 116..163 70..117 208 77.1 Plus
Vm26Ab-PA 168 CG9046-PA 116..163 70..117 208 77.1 Plus