Clone BO18528 Report

Search the DGRC for BO18528

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptLectin-galC1-RA
Protein status:BO18528.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO18528.3prime Sequence

590 bp (590 high quality bases) assembled on 2006-10-13

> BO18528.3prime
ATGGTCTAGAAAGCTTGCCTTCCACACCACAATGGAAATGGTTTCCATTT
CGGGAGCTTCGCATATATACTTAAACAAACTGTTTGGATCCTGTGAGCAG
GGTCTATCGTTTAGCTCAAACTTCCGCGAGTCCTTGTAAATATAGCCAAG
GTGGATGCAGTGCTCCTTCTGCCCAGCATTATCCGGCTGATTCCTTGCCC
ACCTGAGCGAACTAATTCGCTGGGCATTGGTGAACCATCTGTGGCTGCCA
GTCTTGGCCAGATCGTTTCCCGATGTCCAGTACGTCAGCCGTGATCCGTT
GGCCGTCAGGAAAGCCGTAACGGCATCGAACTCCTGGTCCGTTTCGAATG
TGACCAGCTCAGAGTTCAATTCGCGGCATTTCTCGTAGGCCTCGTACCAG
TTCAAGGACTCCGTGCCAAAGAAGTAGTATCCGTCGTTGATTTTGGTAAA
GGGTTCCGCCTTGACGAGCGCACCAAACGTATTTCCTTCGTTTACTTGTA
TGGAGAACTTTTCGCGAGTCCATCCAGTTTTTGCTATGACCAGCAATGTA
ATTAGTAGAACCGTAAGCTTCAGCATGTCGACTGATAACT

BO18528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9976-PA 561 Lectin-galC1-RA 1..558 576..19 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..571 576..19 2790 100 Minus
Lectin-galC1-RA 759 CG9976-RA 14..571 576..19 2790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418086 487..19 2345 100 Minus
2L 23513712 2L 19417460..19417555 576..481 465 99 Minus
Blast to na_te.dros performed on 2015-02-10 17:57:30 has no hits.

BO18528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:11 Download gff for BO18528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9976-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:43 Download gff for BO18528.3prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 19..584 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:05 Download gff for BO18528.3prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 19..584 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:05 Download gff for BO18528.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19417453..19417550 486..584 96 -> Minus
2L 19417620..19418086 19..485 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:43 Download gff for BO18528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417453..19417550 486..584 96 -> Minus
arm_2L 19417620..19418086 19..485 100   Minus

BO18528.5prime Sequence

590 bp (590 high quality bases) assembled on 2006-10-13

> BO18528.5prime
GAAGTTATCAGTCGACATGCTGAAGCTTACGGTTCTACTAATTACATTGC
TGGTCATAGCAAAAACTGGATGGACTCGCGAAAAGTTCTCCATACAAGTA
AACGAAGGAAATACGTTTGGTGCGCTCGTCAAGGCGGAACCCTTTACCAA
AATCAACGACGGATACTACTTCTTTGGCACGGAGTCCTTGAACTGGTACG
AGGCCTACGAGAAATGCCGCGAATTGAACTCTGAGCTGGTCACATTCGAA
ACGGACCAGGAGTTCGATGCCGTTACGGCTTTCCTGACGGCCAACGGATC
ACGGCTGACGTACTGGACATCGGGAAACGATCTGGCCAAGACTGGCAGCC
ACAGATGGTTCACCAATGCCCAGCGAATTAGTTCGCTCAGGTGGGCAAGG
AATCAGCCGGATAATGCTGGGCAGAAGGAGCACTGCATCCACCTTGGCTA
TATTTACAAGGACTCGCGGAAGTTTGAGCTAAACGATAGACCCTGCTCAC
AGGATCCAAACAGTTTGTTTAAGTATATATGCGAAGCTCCCGAAATGGAA
ACCATTTCCATTGTGGTGTGGAAGGCAAGCTTTCTAGACC

BO18528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9976-PA 561 Lectin-galC1-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..571 17..574 2790 100 Plus
Lectin-galC1-RA 759 CG9976-RA 14..571 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418086 106..574 2345 100 Plus
2L 23513712 2L 19417460..19417555 17..112 465 99 Plus
Blast to na_te.dros performed on 2015-02-03 06:46:16 has no hits.

BO18528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:11 Download gff for BO18528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9976-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:31 Download gff for BO18528.5prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 9..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:20 Download gff for BO18528.5prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 9..574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:20 Download gff for BO18528.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19417453..19417550 9..107 96 -> Plus
2L 19417620..19418086 108..574 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:31 Download gff for BO18528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417620..19418086 108..574 100   Plus
arm_2L 19417453..19417550 9..107 96 -> Plus

BO18528.complete Sequence

592 bp assembled on 2006-10-11

GenBank Submission: FJ634455

> BO18528.complete
GAAGTTATCAGTCGACATGCTGAAGCTTACGGTTCTACTAATTACATTGC
TGGTCATAGCAAAAACTGGATGGACTCGCGAAAAGTTCTCCATACAAGTA
AACGAAGGAAATACGTTTGGTGCGCTCGTCAAGGCGGAACCCTTTACCAA
AATCAACGACGGATACTACTTCTTTGGCACGGAGTCCTTGAACTGGTACG
AGGCCTACGAGAAATGCCGCGAATTGAACTCTGAGCTGGTCACATTCGAA
ACGGACCAGGAGTTCGATGCCGTTACGGCTTTCCTGACGGCCAACGGATC
ACGGCTGACGTACTGGACATCGGGAAACGATCTGGCCAAGACTGGCAGCC
ACAGATGGTTCACCAATGCCCAGCGAATTAGTTCGCTCAGGTGGGCAAGG
AATCAGCCGGATAATGCTGGGCAGAAGGAGCACTGCATCCACCTTGGCTA
TATTTACAAGGACTCGCGGAAGTTTGAGCTAAACGATAGACCCTGCTCAC
AGGATCCAAACAGTTTGTTTAAGTATATATGCGAAGCTCCCGAAATGGAA
ACCATTTCCATTGTGGTGTGGAAGGCAAGCTTTCTAGACCAT

BO18528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 561 CG9976-PB 1..558 17..574 2790 100 Plus
Lectin-galC1-RA 561 CG9976-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..571 17..574 2790 100 Plus
Lectin-galC1-RA 759 CG9976-RA 14..571 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418086 106..574 2345 100 Plus
2L 23513712 2L 19417460..19417555 17..112 465 99 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:30 has no hits.

BO18528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:03 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:40 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 9..574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:59 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 14..571 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:03 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..571 9..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:07 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 14..571 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:07 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19417460..19417550 17..107 100 -> Plus
2L 19417620..19418086 108..576 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:59 Download gff for BO18528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417460..19417550 17..107 100 -> Plus
arm_2L 19417620..19418086 108..576 99   Plus

BO18528.pep Sequence

Translation from 16 to 592

> BO18528.pep
MLKLTVLLITLLVIAKTGWTREKFSIQVNEGNTFGALVKAEPFTKINDGY
YFFGTESLNWYEAYEKCRELNSELVTFETDQEFDAVTAFLTANGSRLTYW
TSGNDLAKTGSHRWFTNAQRISSLRWARNQPDNAGQKEHCIHLGYIYKDS
RKFELNDRPCSQDPNSLFKYICEAPEMETISIVVWKASFLDH

BO18528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-PB 186 CG9976-PB 1..186 1..186 999 100 Plus
Lectin-galC1-PA 186 CG9976-PA 1..186 1..186 999 100 Plus
lectin-37Da-PB 186 CG33532-PB 1..186 1..186 592 57.5 Plus
lectin-37Da-PA 186 CG33532-PA 1..186 1..186 592 57.5 Plus
CG43055-PA 180 CG43055-PA 22..180 23..185 321 39.8 Plus