Clone Sequence Records
BO18530.3prime Sequence
809 bp (748 high quality bases) assembled on 2006-10-13
> BO18530.3prime
ATGGTCTAGAAAGCTTGCATTCAGGCCCAGAAGTCGCTTGAAGGCCCGGC
GGTAGTCCAGGTTGAAGATGGTGTAGATGACCGGATTCAGGCCCGAGTTG
ATGTAGCCCAGCCAGGTGATGAAGTTCTTGAACTTGTTCGTGGGGCAGCA
GGTCTGGCAGAAGGGCAGAATGACGTACATGAGGAAGAAGGGCAGCCAGC
AGATGACGAACACGCCCATGATGATGCCCAGGGTGCGAGCCGCTCGCCGC
TCCTTGGAAAGCGAGATCTTCTGTTTCTCCTCAATGAACTGGTTAACCCC
ACTAGTCTTCTTCTGCAACGGAGTGACAGAAACGGCAGCGACTCCCGTCG
AGGATTGCGGCGGGGTCAGCTTTAGGGACGTTTGCTCGTCCGCCTGAGTC
ACGCAGACCTGTATGCAACCTTTGGGATCGCTCCCGCTCTCCGTGCTGAT
CTCGGCGTCCGACTTTCCGCCTCCAGAGTGGCCTCCGCCGGGCTGGCAGC
TACCGCCATCCCCGCCGGCGGGTAAGAGCTGTTGCTCGCCGTGGGGCTCG
CATGTGGACGAGGACTGCGACTTGCGGCCACCACGGGTCTTGCCGTGCTT
AATGGAGTCCTTGGTCTTGGCGCGACGCGACTTCTTGACCAGCACGACCA
CGTGCTGCTGTTGGGGATCGCTGTTGCCATGGGGACCCGCTTTGGAGGAA
TCCTGCGGCTGGTGGGTTTCACTGCTGATGCTCTCCTGGTCGTTCTGGAT
CATAGGCGTGGCGAACTGGGCCCGATCCCGGCCGCAGCAAAGCCAGCTGG
CTAGGAGAC
BO18530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7485-PA | 1806 | TyrR-RA | 1013..1803 | 809..19 | 3955 | 100 | Minus |
CG15113-PA | 1854 | 5-HT1B-RA | 1722..1775 | 115..62 | 170 | 92.5 | Minus |
CG6919-PB | 1266 | oa2-RB | 1048..1104 | 237..181 | 160 | 91.2 | Minus |
CG6919-PA | 1527 | oa2-RA | 1048..1104 | 237..181 | 160 | 91.2 | Minus |
CG18741-PA | 1614 | DopR2-RA | 1261..1308 | 231..184 | 140 | 91.6 | Minus |
CG18741-PB | 1620 | DopR2-RB | 1261..1308 | 231..184 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oct-TyrR-RB | 3675 | CG7485-RB | 1677..2467 | 809..19 | 3955 | 100 | Minus |
Oct-TyrR-RA | 3682 | CG7485-RA | 1684..2474 | 809..19 | 3955 | 100 | Minus |
5-HT1B-RE | 4026 | CG15113-RE | 2634..2712 | 115..37 | 230 | 86.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22062652..22063054 | 809..407 | 2015 | 100 | Minus |
3L | 28110227 | 3L | 22063679..22064071 | 411..19 | 1965 | 100 | Minus |
3R | 32079331 | 3R | 22514669..22514725 | 237..181 | 210 | 91.2 | Minus |
3R | 32079331 | 3R | 18806172..18806247 | 40..115 | 200 | 84.2 | Plus |
3R | 32079331 | 3R | 12513149..12513201 | 185..237 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:58:28 has no hits.
BO18530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:13 Download gff for
BO18530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7485-PA | 1013..1806 | 16..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:42 Download gff for
BO18530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 1684..2485 | 8..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:28:57 Download gff for
BO18530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 1684..2485 | 8..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:28:57 Download gff for
BO18530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22062652..22063052 | 409..809 | 100 | -> | Minus |
3L | 22063682..22064082 | 8..408 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:42 Download gff for
BO18530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22055752..22056152 | 409..809 | 100 | -> | Minus |
arm_3L | 22056782..22057182 | 8..408 | 98 | | Minus |
BO18530.5prime Sequence
739 bp (668 high quality bases) assembled on 2006-10-13
> BO18530.5prime
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGT
BO18530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7485-PA | 1806 | TyrR-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oct-TyrR-RB | 3675 | CG7485-RB | 665..1387 | 17..739 | 3615 | 100 | Plus |
Oct-TyrR-RA | 3682 | CG7485-RA | 672..1394 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22061962..22062362 | 339..739 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 22061081..22061405 | 17..341 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:42:42 has no hits.
BO18530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:14 Download gff for
BO18530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7485-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:23 Download gff for
BO18530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 672..1394 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:27 Download gff for
BO18530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 672..1394 | 17..739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:27 Download gff for
BO18530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22061081..22061404 | 17..340 | 100 | -> | Plus |
3L | 22061964..22062362 | 341..739 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:23 Download gff for
BO18530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22054181..22054504 | 17..340 | 100 | -> | Plus |
arm_3L | 22055064..22055462 | 341..739 | 100 | | Plus |
BO18530.complete Sequence
1837 bp assembled on 2008-08-15
GenBank Submission: FJ634457
> BO18530.complete
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGTAGTCCGCCGTT
GATCGGCTGGAACGACTGGCCGGACGAGTTCACAAGCGCCACGCCCTGCG
AGCTGACCTCGCAGCGAGGCTACGTGATCTACTCCTCGCTGGGCTCCTTC
TTTATTCCGCTGGCCATCATGACGATCGTCTACATCGAGATCTTCGTGGC
CACGCGGCGCCGCCTAAGGGAGCGAGCCAGGGCCAACAAGCTTAACACGA
TCGCTCTGAAGTCCACTGAGCTCGAGCCGATGGCAAACTCCTCGCCCGTC
GCCGCCTCCAACTCCGGCTCCAAGTCGCGTCTCCTAGCCAGCTGGCTTTG
CTGCGGCCGGGATCGGGCCCAGTTCGCCACGCCTATGATCCAGAACGACC
AGGAGAGCATCAGCAGTGAAACCCACCAGCCGCAGGATTCCTCCAAAGCG
GGTCCCCATGGCAACAGCGATCCCCAACAGCAGCACGTGGTCGTGCTGGT
CAAGAAGTCGCGTCGCGCCAAGACCAAGGACTCCATTAAGCACGGCAAGA
CCCGTGGTGGCCGCAAGTCGCAGTCCTCGTCCACATGCGAGCCCCACGGC
GAGCAACAGCTCTTACCCGCCGGCGGGGATGGCGGTAGCTGCCAGCCCGG
CGGAGGCCACTCTGGAGGCGGAAAGTCGGACGCCGAGATCAGCACGGAGA
GCGGGAGCGATCCCAAAGGTTGCATACAGGTCTGCGTGACTCAGGCGGAC
GAGCAAACGTCCCTAAAGCTGACCCCGCCGCAATCCTCGACGGGAGTCGC
TGCCGTTTCTGTCACTCCGTTGCAGAAGAAGACTAGTGGGGTTAACCAGT
TCATTGAGGAGAAACAGAAGATCTCGCTTTCCAAGGAGCGGCGAGCGGCT
CGCACCCTGGGCATCATCATGGGCGTGTTCGTCATCTGCTGGCTGCCCTT
CTTCCTCATGTACGTCATTCTGCCCTTCTGCCAGACCTGCTGCCCCACGA
ACAAGTTCAAGAACTTCATCACCTGGCTGGGCTACATCAACTCGGGCCTG
AATCCGGTCATCTACACCATCTTCAACCTGGACTACCGCCGGGCCTTCAA
GCGACTTCTGGGCCTGAATGCAAGCTTTCTAGACCAT
BO18530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oct-TyrR-RB | 1806 | CG7485-PB | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Oct-TyrR-RA | 1806 | CG7485-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
5-HT1B-RE | 1890 | CG15113-PE | 1722..1800 | 1723..1801 | 230 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oct-TyrR-RB | 3675 | CG7485-RB | 665..2467 | 17..1819 | 9015 | 100 | Plus |
Oct-TyrR-RA | 3682 | CG7485-RA | 672..2474 | 17..1819 | 9015 | 100 | Plus |
5-HT1B-RE | 4026 | CG15113-RE | 2634..2712 | 1723..1801 | 230 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22061962..22063054 | 339..1431 | 5465 | 100 | Plus |
3L | 28110227 | 3L | 22063679..22064071 | 1427..1819 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 22061081..22061405 | 17..341 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 22514669..22514725 | 1601..1657 | 210 | 91.2 | Plus |
3R | 32079331 | 3R | 18806172..18806247 | 1798..1723 | 200 | 84.2 | Minus |
3R | 32079331 | 3R | 12513149..12513201 | 1653..1601 | 190 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:50 has no hits.
BO18530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:20 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TyrR-RA | 319..2132 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:10 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 672..2474 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:43 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TyrR-RA | 319..2121 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:56 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oct-TyrR-RA | 672..2474 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:56 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22061081..22061404 | 17..340 | 100 | -> | Plus |
3L | 22061964..22063052 | 341..1429 | 100 | -> | Plus |
3L | 22063682..22064071 | 1430..1821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:10 Download gff for
BO18530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22054181..22054504 | 17..340 | 100 | -> | Plus |
arm_3L | 22055064..22056152 | 341..1429 | 100 | -> | Plus |
arm_3L | 22056782..22057171 | 1430..1821 | 99 | | Plus |
BO18530.pep Sequence
Translation from 16 to 1837
> BO18530.pep
MPSADQILFVNVTTTVAAAALTAAAAVSTTKSGSGNAARGYTDSDDDAGM
GTEAVANISGSLVEGLTTVTAALSTAQADKDSAGECEGAVEELHASILGL
QLAVPEWEALLTALVLSVIIVLTIIGNILVILSVFTYKPLRIVQNFFIVS
LAVADLTVALLVLPFNVAYSILGRWEFGIHLCKLWLTCDVLCCTSSILNL
CAIALDRYWAITDPINYAQKRTVGRVLLLISGVWLLSLLISSPPLIGWND
WPDEFTSATPCELTSQRGYVIYSSLGSFFIPLAIMTIVYIEIFVATRRRL
RERARANKLNTIALKSTELEPMANSSPVAASNSGSKSRLLASWLCCGRDR
AQFATPMIQNDQESISSETHQPQDSSKAGPHGNSDPQQQHVVVLVKKSRR
AKTKDSIKHGKTRGGRKSQSSSTCEPHGEQQLLPAGGDGGSCQPGGGHSG
GGKSDAEISTESGSDPKGCIQVCVTQADEQTSLKLTPPQSSTGVAAVSVT
PLQKKTSGVNQFIEEKQKISLSKERRAARTLGIIMGVFVICWLPFFLMYV
ILPFCQTCCPTNKFKNFITWLGYINSGLNPVIYTIFNLDYRRAFKRLLGL
NASFLDH
BO18530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oct-TyrR-PB | 601 | CG7485-PB | 1..601 | 1..601 | 3083 | 100 | Plus |
Oct-TyrR-PA | 601 | CG7485-PA | 1..601 | 1..601 | 3083 | 100 | Plus |
CG18208-PC | 670 | CG18208-PC | 116..668 | 110..598 | 675 | 31.1 | Plus |
TyrR-PC | 631 | CG7431-PC | 52..608 | 25..597 | 603 | 30.5 | Plus |
TyrR-PB | 631 | CG7431-PB | 52..608 | 25..597 | 603 | 30.5 | Plus |