Clone BO18530 Report

Search the DGRC for BO18530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptTyrR-RA
Protein status:BO18530.pep: Imported from assembly
Sequenced Size:1837

Clone Sequence Records

BO18530.3prime Sequence

809 bp (748 high quality bases) assembled on 2006-10-13

> BO18530.3prime
ATGGTCTAGAAAGCTTGCATTCAGGCCCAGAAGTCGCTTGAAGGCCCGGC
GGTAGTCCAGGTTGAAGATGGTGTAGATGACCGGATTCAGGCCCGAGTTG
ATGTAGCCCAGCCAGGTGATGAAGTTCTTGAACTTGTTCGTGGGGCAGCA
GGTCTGGCAGAAGGGCAGAATGACGTACATGAGGAAGAAGGGCAGCCAGC
AGATGACGAACACGCCCATGATGATGCCCAGGGTGCGAGCCGCTCGCCGC
TCCTTGGAAAGCGAGATCTTCTGTTTCTCCTCAATGAACTGGTTAACCCC
ACTAGTCTTCTTCTGCAACGGAGTGACAGAAACGGCAGCGACTCCCGTCG
AGGATTGCGGCGGGGTCAGCTTTAGGGACGTTTGCTCGTCCGCCTGAGTC
ACGCAGACCTGTATGCAACCTTTGGGATCGCTCCCGCTCTCCGTGCTGAT
CTCGGCGTCCGACTTTCCGCCTCCAGAGTGGCCTCCGCCGGGCTGGCAGC
TACCGCCATCCCCGCCGGCGGGTAAGAGCTGTTGCTCGCCGTGGGGCTCG
CATGTGGACGAGGACTGCGACTTGCGGCCACCACGGGTCTTGCCGTGCTT
AATGGAGTCCTTGGTCTTGGCGCGACGCGACTTCTTGACCAGCACGACCA
CGTGCTGCTGTTGGGGATCGCTGTTGCCATGGGGACCCGCTTTGGAGGAA
TCCTGCGGCTGGTGGGTTTCACTGCTGATGCTCTCCTGGTCGTTCTGGAT
CATAGGCGTGGCGAACTGGGCCCGATCCCGGCCGCAGCAAAGCCAGCTGG
CTAGGAGAC

BO18530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7485-PA 1806 TyrR-RA 1013..1803 809..19 3955 100 Minus
CG15113-PA 1854 5-HT1B-RA 1722..1775 115..62 170 92.5 Minus
CG6919-PB 1266 oa2-RB 1048..1104 237..181 160 91.2 Minus
CG6919-PA 1527 oa2-RA 1048..1104 237..181 160 91.2 Minus
CG18741-PA 1614 DopR2-RA 1261..1308 231..184 140 91.6 Minus
CG18741-PB 1620 DopR2-RB 1261..1308 231..184 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Oct-TyrR-RB 3675 CG7485-RB 1677..2467 809..19 3955 100 Minus
Oct-TyrR-RA 3682 CG7485-RA 1684..2474 809..19 3955 100 Minus
5-HT1B-RE 4026 CG15113-RE 2634..2712 115..37 230 86.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22062652..22063054 809..407 2015 100 Minus
3L 28110227 3L 22063679..22064071 411..19 1965 100 Minus
3R 32079331 3R 22514669..22514725 237..181 210 91.2 Minus
3R 32079331 3R 18806172..18806247 40..115 200 84.2 Plus
3R 32079331 3R 12513149..12513201 185..237 190 90.6 Plus
Blast to na_te.dros performed on 2015-02-12 06:58:28 has no hits.

BO18530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:13 Download gff for BO18530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7485-PA 1013..1806 16..809 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:42 Download gff for BO18530.3prime
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 1684..2485 8..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:28:57 Download gff for BO18530.3prime
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 1684..2485 8..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:28:57 Download gff for BO18530.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22062652..22063052 409..809 100 -> Minus
3L 22063682..22064082 8..408 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:42 Download gff for BO18530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22055752..22056152 409..809 100 -> Minus
arm_3L 22056782..22057182 8..408 98   Minus

BO18530.5prime Sequence

739 bp (668 high quality bases) assembled on 2006-10-13

> BO18530.5prime
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGT

BO18530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7485-PA 1806 TyrR-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Oct-TyrR-RB 3675 CG7485-RB 665..1387 17..739 3615 100 Plus
Oct-TyrR-RA 3682 CG7485-RA 672..1394 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22061962..22062362 339..739 2005 100 Plus
3L 28110227 3L 22061081..22061405 17..341 1625 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:42:42 has no hits.

BO18530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:14 Download gff for BO18530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7485-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:47:23 Download gff for BO18530.5prime
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 672..1394 17..739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:27 Download gff for BO18530.5prime
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 672..1394 17..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:27 Download gff for BO18530.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22061081..22061404 17..340 100 -> Plus
3L 22061964..22062362 341..739 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:47:23 Download gff for BO18530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22054181..22054504 17..340 100 -> Plus
arm_3L 22055064..22055462 341..739 100   Plus

BO18530.complete Sequence

1837 bp assembled on 2008-08-15

GenBank Submission: FJ634457

> BO18530.complete
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGTAGTCCGCCGTT
GATCGGCTGGAACGACTGGCCGGACGAGTTCACAAGCGCCACGCCCTGCG
AGCTGACCTCGCAGCGAGGCTACGTGATCTACTCCTCGCTGGGCTCCTTC
TTTATTCCGCTGGCCATCATGACGATCGTCTACATCGAGATCTTCGTGGC
CACGCGGCGCCGCCTAAGGGAGCGAGCCAGGGCCAACAAGCTTAACACGA
TCGCTCTGAAGTCCACTGAGCTCGAGCCGATGGCAAACTCCTCGCCCGTC
GCCGCCTCCAACTCCGGCTCCAAGTCGCGTCTCCTAGCCAGCTGGCTTTG
CTGCGGCCGGGATCGGGCCCAGTTCGCCACGCCTATGATCCAGAACGACC
AGGAGAGCATCAGCAGTGAAACCCACCAGCCGCAGGATTCCTCCAAAGCG
GGTCCCCATGGCAACAGCGATCCCCAACAGCAGCACGTGGTCGTGCTGGT
CAAGAAGTCGCGTCGCGCCAAGACCAAGGACTCCATTAAGCACGGCAAGA
CCCGTGGTGGCCGCAAGTCGCAGTCCTCGTCCACATGCGAGCCCCACGGC
GAGCAACAGCTCTTACCCGCCGGCGGGGATGGCGGTAGCTGCCAGCCCGG
CGGAGGCCACTCTGGAGGCGGAAAGTCGGACGCCGAGATCAGCACGGAGA
GCGGGAGCGATCCCAAAGGTTGCATACAGGTCTGCGTGACTCAGGCGGAC
GAGCAAACGTCCCTAAAGCTGACCCCGCCGCAATCCTCGACGGGAGTCGC
TGCCGTTTCTGTCACTCCGTTGCAGAAGAAGACTAGTGGGGTTAACCAGT
TCATTGAGGAGAAACAGAAGATCTCGCTTTCCAAGGAGCGGCGAGCGGCT
CGCACCCTGGGCATCATCATGGGCGTGTTCGTCATCTGCTGGCTGCCCTT
CTTCCTCATGTACGTCATTCTGCCCTTCTGCCAGACCTGCTGCCCCACGA
ACAAGTTCAAGAACTTCATCACCTGGCTGGGCTACATCAACTCGGGCCTG
AATCCGGTCATCTACACCATCTTCAACCTGGACTACCGCCGGGCCTTCAA
GCGACTTCTGGGCCTGAATGCAAGCTTTCTAGACCAT

BO18530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Oct-TyrR-RB 1806 CG7485-PB 1..1803 17..1819 9015 100 Plus
Oct-TyrR-RA 1806 CG7485-PA 1..1803 17..1819 9015 100 Plus
5-HT1B-RE 1890 CG15113-PE 1722..1800 1723..1801 230 86.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Oct-TyrR-RB 3675 CG7485-RB 665..2467 17..1819 9015 100 Plus
Oct-TyrR-RA 3682 CG7485-RA 672..2474 17..1819 9015 100 Plus
5-HT1B-RE 4026 CG15113-RE 2634..2712 1723..1801 230 86.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22061962..22063054 339..1431 5465 100 Plus
3L 28110227 3L 22063679..22064071 1427..1819 1965 100 Plus
3L 28110227 3L 22061081..22061405 17..341 1625 100 Plus
3R 32079331 3R 22514669..22514725 1601..1657 210 91.2 Plus
3R 32079331 3R 18806172..18806247 1798..1723 200 84.2 Minus
3R 32079331 3R 12513149..12513201 1653..1601 190 90.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:50 has no hits.

BO18530.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:20 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
TyrR-RA 319..2132 17..1830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:10 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 672..2474 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:43 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
TyrR-RA 319..2121 17..1821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:56 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
Oct-TyrR-RA 672..2474 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:56 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22061081..22061404 17..340 100 -> Plus
3L 22061964..22063052 341..1429 100 -> Plus
3L 22063682..22064071 1430..1821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:10 Download gff for BO18530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22054181..22054504 17..340 100 -> Plus
arm_3L 22055064..22056152 341..1429 100 -> Plus
arm_3L 22056782..22057171 1430..1821 99   Plus

BO18530.pep Sequence

Translation from 16 to 1837

> BO18530.pep
MPSADQILFVNVTTTVAAAALTAAAAVSTTKSGSGNAARGYTDSDDDAGM
GTEAVANISGSLVEGLTTVTAALSTAQADKDSAGECEGAVEELHASILGL
QLAVPEWEALLTALVLSVIIVLTIIGNILVILSVFTYKPLRIVQNFFIVS
LAVADLTVALLVLPFNVAYSILGRWEFGIHLCKLWLTCDVLCCTSSILNL
CAIALDRYWAITDPINYAQKRTVGRVLLLISGVWLLSLLISSPPLIGWND
WPDEFTSATPCELTSQRGYVIYSSLGSFFIPLAIMTIVYIEIFVATRRRL
RERARANKLNTIALKSTELEPMANSSPVAASNSGSKSRLLASWLCCGRDR
AQFATPMIQNDQESISSETHQPQDSSKAGPHGNSDPQQQHVVVLVKKSRR
AKTKDSIKHGKTRGGRKSQSSSTCEPHGEQQLLPAGGDGGSCQPGGGHSG
GGKSDAEISTESGSDPKGCIQVCVTQADEQTSLKLTPPQSSTGVAAVSVT
PLQKKTSGVNQFIEEKQKISLSKERRAARTLGIIMGVFVICWLPFFLMYV
ILPFCQTCCPTNKFKNFITWLGYINSGLNPVIYTIFNLDYRRAFKRLLGL
NASFLDH

BO18530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Oct-TyrR-PB 601 CG7485-PB 1..601 1..601 3083 100 Plus
Oct-TyrR-PA 601 CG7485-PA 1..601 1..601 3083 100 Plus
CG18208-PC 670 CG18208-PC 116..668 110..598 675 31.1 Plus
TyrR-PC 631 CG7431-PC 52..608 25..597 603 30.5 Plus
TyrR-PB 631 CG7431-PB 52..608 25..597 603 30.5 Plus