Clone BO18531 Report

Search the DGRC for BO18531

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptsnk-RA
Protein status:BO18531.pep: validated full length
Sequenced Size:1339

Clone Sequence Records

BO18531.3prime Sequence

815 bp (691 high quality bases) assembled on 2006-10-13

> BO18531.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCTTGAAGGCAATCTTCTCAATCCAAT
CCAGGTAGCTATATAGCCTGGTGTAAACTCCTGGGGCATTGGGAGCCGCA
CAGAATTTTCCAAACGAGGTGATGCCCACCACGAAGGCCACGCAGTTGTA
TTCCGGCAGCAGGGCATGAATGGGACCGCCGGAGTCACCCTGGCAGGTGT
CCCTGCCGCCTGGCAAATATCCCGCACAGAACTGCCCCTCGATGATTCCC
CTGGGCAGACGTCGCTCCTTGCGATAGATCTGCTTGCAGGTCATTTGTGG
GACTACGTCCAGGTCCACCTGGCGCAGGGCATTCGATTTGGCGCCCAGGA
ACTCGGTGCGTCCCCAACCGGCGGCCACCACAGTGGGTATCTGGAGCTCC
GGCAGTTGCCACAGGCAAGCAGGACGCACCTGCTCCGAGAACTTGACCCT
TCTGGTCAGCTTGAGCAGGGCAATATCGTGGTAATATGCCGAGGATCTGT
ACTTCGGATGCAGCACGATGATGAGGATCTTGATGTCCTGCTGGGTCGCG
CTGGTCTCGTTCAACTGGCGGGCGCCCAAGCGAACCATGTCCGGTGGTTT
GCTACCAGAGGTGGCACAGTGGGCAGCGGTCAGGACATACAGTTCGCTAA
CCAGGGCGCCTCCACAGCCCCATTTTATATCTTGATCCTTGGAGCCACTA
CCCTGCGTCCATCCTAAGGCAGCCATGTGAGGGAAGAGTCCGTGTCGAGT
GGGGGTTCCACCGACTATCAGGGGAACACTGGGCACACACTGCTTTCCGG
AGAATGTGCGTCCGG

BO18531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7996-PA 1308 snk-RA 509..1305 815..19 3960 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 601..1397 815..19 3970 99.9 Minus
snk-RA 1403 CG7996-RA 570..1366 815..19 3970 99.9 Minus
snk-RC 1399 CG7996-RC 570..1362 815..19 3900 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13040202..13040786 19..603 2925 100 Plus
3R 32079331 3R 13040840..13041053 602..815 1055 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 03:58:54 has no hits.

BO18531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:14 Download gff for BO18531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7996-PA 509..1308 18..815 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:05 Download gff for BO18531.3prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 570..1373 9..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:19 Download gff for BO18531.3prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 570..1373 9..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:19 Download gff for BO18531.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13040195..13040784 9..601 99 <- Plus
3R 13040840..13041053 602..815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:05 Download gff for BO18531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8865917..8866506 9..601 99 <- Plus
arm_3R 8866562..8866775 602..815 99   Plus

BO18531.5prime Sequence

785 bp (733 high quality bases) assembled on 2006-10-13

> BO18531.5prime
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAAACAAA

BO18531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7996-PA 1308 snk-RA 1..764 17..780 3820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 93..856 17..780 3820 100 Plus
snk-RA 1403 CG7996-RA 62..825 17..780 3820 100 Plus
snk-RC 1399 CG7996-RC 62..821 17..780 3750 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13041158..13041539 476..95 1910 100 Minus
3R 32079331 3R 13040840..13041101 738..477 1310 100 Minus
3R 32079331 3R 13041603..13041681 95..17 395 100 Minus
3R 32079331 3R 13040743..13040786 780..737 220 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:11:04 has no hits.

BO18531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:15 Download gff for BO18531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7996-PA 1..765 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:24 Download gff for BO18531.5prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 60..826 14..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:39 Download gff for BO18531.5prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 60..826 14..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:39 Download gff for BO18531.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13040742..13040784 739..782 97 <- Minus
3R 13040840..13041101 477..738 100 <- Minus
3R 13041158..13041538 96..476 100 <- Minus
3R 13041603..13041683 14..95 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:24 Download gff for BO18531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8866464..8866506 739..782 97 <- Minus
arm_3R 8866562..8866823 477..738 100 <- Minus
arm_3R 8866880..8867260 96..476 100 <- Minus
arm_3R 8867325..8867405 14..95 98   Minus

BO18531.complete Sequence

1339 bp assembled on 2006-10-11

GenBank Submission: FJ634458

> BO18531.complete
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAACGAGACCAGCGCGACCCAGC
AGGACATCAAGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCG
GCATATTACCACGATATTGCCCTGCTCAAGCTGACCAGAAGGGTCAAGTT
CTCGGAGCAGGTGCGTCCTGCTTGCCTGTGGCAACTGCCGGAGCTCCAGA
TACCCACTGTGGTGGCCGCCGGTTGGGGACGCACCGAGTTCCTGGGCGCC
AAATCGAATGCCCTGCGCCAGGTGGACCTGGACGTAGTCCCACAAATGAC
CTGCAAGCAGATCTATCGCAAGGAGCGACGTCTGCCCAGGGGAATCATCG
AGGGGCAGTTCTGTGCGGGATATTTGCCAGGCGGCAGGGACACCTGCCAG
GGTGACTCCGGCGGTCCCATTCATGCCCTGCTGCCGGAATACAACTGCGT
GGCCTTCGTGGTGGGCATCACCTCGTTTGGAAAATTCTGTGCGGCTCCCA
ATGCCCCAGGAGTTTACACCAGGCTATATAGCTACCTGGATTGGATTGAG
AAGATTGCCTTCAAGCAGCACGCAAGCTTTCTAGACCAT

BO18531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1308 CG7996-PB 1..1305 17..1321 6525 100 Plus
snk-RA 1308 CG7996-PA 1..1305 17..1321 6525 100 Plus
snk-RC 759 CG7996-PC 1..759 17..779 3720 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 93..1397 17..1321 6525 100 Plus
snk-RA 1403 CG7996-RA 62..1366 17..1321 6525 100 Plus
snk-RC 1399 CG7996-RC 62..1362 17..1321 6430 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13040202..13040786 1321..737 2925 100 Minus
3R 32079331 3R 13041158..13041539 476..95 1910 100 Minus
3R 32079331 3R 13040840..13041101 738..477 1310 100 Minus
3R 32079331 3R 13041603..13041681 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:13:15 has no hits.

BO18531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:05 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 1..1308 17..1322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:44 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 91..1404 14..1331 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:55 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RA 62..1366 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:05 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 91..1404 14..1331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:14 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RA 62..1366 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:14 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13040200..13040784 739..1323 99 <- Minus
3R 13040840..13041101 477..738 100 <- Minus
3R 13041158..13041538 96..476 100 <- Minus
3R 13041603..13041681 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:55 Download gff for BO18531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8865922..8866506 739..1323 99 <- Minus
arm_3R 8866562..8866823 477..738 100 <- Minus
arm_3R 8866880..8867260 96..476 100 <- Minus
arm_3R 8867325..8867403 17..95 100   Minus

BO18531.pep Sequence

Translation from 16 to 1339

> BO18531.pep
MIILWSLIVHLQLTCLHLILQTPNLEALDALEIINYQTTKYTIPEVWKEQ
PVATIGEDVDDQDTEDEESYLKFGDDAEVRTSVSEGLHEGAFCRRSFDGR
SGYCILAYQCLHVIREYRVHGTRIDICTHRNNVPVICCPLADKHVLAQRI
SATKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHM
AALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG
ARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVR
PACLWQLPELQIPTVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIY
RKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVG
ITSFGKFCAAPNAPGVYTRLYSYLDWIEKIAFKQHASFLDH

BO18531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
snk-PB 435 CG7996-PB 1..435 1..435 2328 100 Plus
snk-PA 435 CG7996-PA 1..435 1..435 2328 100 Plus
snk-PC 252 CG7996-PC 1..241 1..241 1286 99.2 Plus
spirit-PD 393 CG2056-PD 95..366 136..432 515 41.1 Plus
spirit-PC 393 CG2056-PC 95..366 136..432 515 41.1 Plus