Clone Sequence Records
BO18531.3prime Sequence
815 bp (691 high quality bases) assembled on 2006-10-13
> BO18531.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCTTGAAGGCAATCTTCTCAATCCAAT
CCAGGTAGCTATATAGCCTGGTGTAAACTCCTGGGGCATTGGGAGCCGCA
CAGAATTTTCCAAACGAGGTGATGCCCACCACGAAGGCCACGCAGTTGTA
TTCCGGCAGCAGGGCATGAATGGGACCGCCGGAGTCACCCTGGCAGGTGT
CCCTGCCGCCTGGCAAATATCCCGCACAGAACTGCCCCTCGATGATTCCC
CTGGGCAGACGTCGCTCCTTGCGATAGATCTGCTTGCAGGTCATTTGTGG
GACTACGTCCAGGTCCACCTGGCGCAGGGCATTCGATTTGGCGCCCAGGA
ACTCGGTGCGTCCCCAACCGGCGGCCACCACAGTGGGTATCTGGAGCTCC
GGCAGTTGCCACAGGCAAGCAGGACGCACCTGCTCCGAGAACTTGACCCT
TCTGGTCAGCTTGAGCAGGGCAATATCGTGGTAATATGCCGAGGATCTGT
ACTTCGGATGCAGCACGATGATGAGGATCTTGATGTCCTGCTGGGTCGCG
CTGGTCTCGTTCAACTGGCGGGCGCCCAAGCGAACCATGTCCGGTGGTTT
GCTACCAGAGGTGGCACAGTGGGCAGCGGTCAGGACATACAGTTCGCTAA
CCAGGGCGCCTCCACAGCCCCATTTTATATCTTGATCCTTGGAGCCACTA
CCCTGCGTCCATCCTAAGGCAGCCATGTGAGGGAAGAGTCCGTGTCGAGT
GGGGGTTCCACCGACTATCAGGGGAACACTGGGCACACACTGCTTTCCGG
AGAATGTGCGTCCGG
BO18531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7996-PA | 1308 | snk-RA | 509..1305 | 815..19 | 3960 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snk-RB | 1434 | CG7996-RB | 601..1397 | 815..19 | 3970 | 99.9 | Minus |
snk-RA | 1403 | CG7996-RA | 570..1366 | 815..19 | 3970 | 99.9 | Minus |
snk-RC | 1399 | CG7996-RC | 570..1362 | 815..19 | 3900 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13040202..13040786 | 19..603 | 2925 | 100 | Plus |
3R | 32079331 | 3R | 13040840..13041053 | 602..815 | 1055 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:54 has no hits.
BO18531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:14 Download gff for
BO18531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7996-PA | 509..1308 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:05 Download gff for
BO18531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 570..1373 | 9..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:19 Download gff for
BO18531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 570..1373 | 9..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:19 Download gff for
BO18531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13040195..13040784 | 9..601 | 99 | <- | Plus |
3R | 13040840..13041053 | 602..815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:05 Download gff for
BO18531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8865917..8866506 | 9..601 | 99 | <- | Plus |
arm_3R | 8866562..8866775 | 602..815 | 99 | | Plus |
BO18531.5prime Sequence
785 bp (733 high quality bases) assembled on 2006-10-13
> BO18531.5prime
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAAACAAA
BO18531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7996-PA | 1308 | snk-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snk-RB | 1434 | CG7996-RB | 93..856 | 17..780 | 3820 | 100 | Plus |
snk-RA | 1403 | CG7996-RA | 62..825 | 17..780 | 3820 | 100 | Plus |
snk-RC | 1399 | CG7996-RC | 62..821 | 17..780 | 3750 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13041158..13041539 | 476..95 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 13040840..13041101 | 738..477 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 13041603..13041681 | 95..17 | 395 | 100 | Minus |
3R | 32079331 | 3R | 13040743..13040786 | 780..737 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:11:04 has no hits.
BO18531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:15 Download gff for
BO18531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7996-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:24 Download gff for
BO18531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 60..826 | 14..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:39 Download gff for
BO18531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 60..826 | 14..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:39 Download gff for
BO18531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13040742..13040784 | 739..782 | 97 | <- | Minus |
3R | 13040840..13041101 | 477..738 | 100 | <- | Minus |
3R | 13041158..13041538 | 96..476 | 100 | <- | Minus |
3R | 13041603..13041683 | 14..95 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:24 Download gff for
BO18531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8866464..8866506 | 739..782 | 97 | <- | Minus |
arm_3R | 8866562..8866823 | 477..738 | 100 | <- | Minus |
arm_3R | 8866880..8867260 | 96..476 | 100 | <- | Minus |
arm_3R | 8867325..8867405 | 14..95 | 98 | | Minus |
BO18531.complete Sequence
1339 bp assembled on 2006-10-11
GenBank Submission: FJ634458
> BO18531.complete
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAACGAGACCAGCGCGACCCAGC
AGGACATCAAGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCG
GCATATTACCACGATATTGCCCTGCTCAAGCTGACCAGAAGGGTCAAGTT
CTCGGAGCAGGTGCGTCCTGCTTGCCTGTGGCAACTGCCGGAGCTCCAGA
TACCCACTGTGGTGGCCGCCGGTTGGGGACGCACCGAGTTCCTGGGCGCC
AAATCGAATGCCCTGCGCCAGGTGGACCTGGACGTAGTCCCACAAATGAC
CTGCAAGCAGATCTATCGCAAGGAGCGACGTCTGCCCAGGGGAATCATCG
AGGGGCAGTTCTGTGCGGGATATTTGCCAGGCGGCAGGGACACCTGCCAG
GGTGACTCCGGCGGTCCCATTCATGCCCTGCTGCCGGAATACAACTGCGT
GGCCTTCGTGGTGGGCATCACCTCGTTTGGAAAATTCTGTGCGGCTCCCA
ATGCCCCAGGAGTTTACACCAGGCTATATAGCTACCTGGATTGGATTGAG
AAGATTGCCTTCAAGCAGCACGCAAGCTTTCTAGACCAT
BO18531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snk-RB | 1308 | CG7996-PB | 1..1305 | 17..1321 | 6525 | 100 | Plus |
snk-RA | 1308 | CG7996-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
snk-RC | 759 | CG7996-PC | 1..759 | 17..779 | 3720 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snk-RB | 1434 | CG7996-RB | 93..1397 | 17..1321 | 6525 | 100 | Plus |
snk-RA | 1403 | CG7996-RA | 62..1366 | 17..1321 | 6525 | 100 | Plus |
snk-RC | 1399 | CG7996-RC | 62..1362 | 17..1321 | 6430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13040202..13040786 | 1321..737 | 2925 | 100 | Minus |
3R | 32079331 | 3R | 13041158..13041539 | 476..95 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 13040840..13041101 | 738..477 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 13041603..13041681 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:13:15 has no hits.
BO18531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:05 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RB | 1..1308 | 17..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:44 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RB | 91..1404 | 14..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:55 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 62..1366 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:05 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RB | 91..1404 | 14..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:14 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snk-RA | 62..1366 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:14 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13040200..13040784 | 739..1323 | 99 | <- | Minus |
3R | 13040840..13041101 | 477..738 | 100 | <- | Minus |
3R | 13041158..13041538 | 96..476 | 100 | <- | Minus |
3R | 13041603..13041681 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:55 Download gff for
BO18531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8865922..8866506 | 739..1323 | 99 | <- | Minus |
arm_3R | 8866562..8866823 | 477..738 | 100 | <- | Minus |
arm_3R | 8866880..8867260 | 96..476 | 100 | <- | Minus |
arm_3R | 8867325..8867403 | 17..95 | 100 | | Minus |
BO18531.pep Sequence
Translation from 16 to 1339
> BO18531.pep
MIILWSLIVHLQLTCLHLILQTPNLEALDALEIINYQTTKYTIPEVWKEQ
PVATIGEDVDDQDTEDEESYLKFGDDAEVRTSVSEGLHEGAFCRRSFDGR
SGYCILAYQCLHVIREYRVHGTRIDICTHRNNVPVICCPLADKHVLAQRI
SATKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHM
AALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG
ARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVR
PACLWQLPELQIPTVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIY
RKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVG
ITSFGKFCAAPNAPGVYTRLYSYLDWIEKIAFKQHASFLDH
BO18531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snk-PB | 435 | CG7996-PB | 1..435 | 1..435 | 2328 | 100 | Plus |
snk-PA | 435 | CG7996-PA | 1..435 | 1..435 | 2328 | 100 | Plus |
snk-PC | 252 | CG7996-PC | 1..241 | 1..241 | 1286 | 99.2 | Plus |
spirit-PD | 393 | CG2056-PD | 95..366 | 136..432 | 515 | 41.1 | Plus |
spirit-PC | 393 | CG2056-PC | 95..366 | 136..432 | 515 | 41.1 | Plus |