Clone Sequence Records
BO18532.3prime Sequence
828 bp (757 high quality bases) assembled on 2006-10-13
> BO18532.3prime
ATGGTCTAGAAAGCTTGCATATCTACGTGTCCTTCTCTTGAAACTCAGCC
AAATGCCATTCCTGCTGGCGGTGAGGAAGGTGAGCGGAGACACCTCCACC
CTGCACTGATCCTCATCCGCCAGCTGGACGCAGTGGTCCTGCAGTAGTGT
GGTCAGTGCAGCCTTCGTCTGGAGCAGGCCAAGTCGCATTCCCGGACACA
TTCGTGGTCCAGCTCCGAAGCCCAGAAACCGACAGCCCATTGGTGGCTGA
TTTAGAAAGCGTTCTGGACGAAACTGGTTGGGTGCCGGATACAATGCGGG
ATCTAAATGAATGGCCTGAACCGGCAACACCAGCACGGTGCCCAAATGCA
CCTTAAGTTCGCTGCTCGCTCCTGATTTCTGATCAGGAAGGGTGAATGTC
TTGGTGCAGCGCTTCTGCAGAGCCTGCATGGCCGGATGAAGACGCAGTGC
CTCCAAGAGCGCAGCTTCGCTATAGCGAAGTTCACCCAGAGCCACTGGAT
CAATCAGATTGCCAGCGTGGCGCTGGGCCACTTCATCCAATTCGATGTGT
AACCGTCGCTGTGCATCCTCATTGAGGGCCAATTCGTAGAGGGCGAAGGC
GAGTAGCATCGCCGAGGTTTCGTAGCCCTCCAGTAGGAGAGTGGTGGCAT
GTCCAGCTAGCTCCTCCTTTCCCAAGCCTCTTTTGCTTTCCGCCAGCCAT
TGCAAGAGGTTGTCGCCACCACTTCGGGCTTCCACCAATTCCCTGAACCA
GTGCTGCAGGGGCAGGGGTACGTATCGGTGGCCAATGAGTCTACCCAATC
GAGGCGTGTGCAACAGTGACATGGTCTC
BO18532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6585-PA | 1473 | Cyp308a1-RA | 661..1470 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 691..1500 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710724..18711195 | 776..305 | 2360 | 100 | Minus |
X | 23542271 | X | 18711257..18711542 | 304..19 | 1430 | 100 | Minus |
X | 23542271 | X | 18710615..18710667 | 828..776 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:27:02 has no hits.
BO18532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:16 Download gff for
BO18532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6585-PA | 661..1473 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:13 Download gff for
BO18532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 691..1503 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:06 Download gff for
BO18532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 691..1503 | 15..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:06 Download gff for
BO18532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18710615..18710667 | 776..828 | 100 | -> | Minus |
X | 18710725..18711195 | 305..775 | 100 | -> | Minus |
X | 18711257..18711545 | 15..304 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:13 Download gff for
BO18532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18604648..18604700 | 776..828 | 100 | -> | Minus |
arm_X | 18604758..18605228 | 305..775 | 100 | -> | Minus |
arm_X | 18605290..18605578 | 15..304 | 99 | | Minus |
BO18532.5prime Sequence
764 bp (731 high quality bases) assembled on 2006-10-13
> BO18532.5prime
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAACCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGG
BO18532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6585-PA | 1473 | Cyp308a1-RA | 1..748 | 17..764 | 3715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 31..778 | 17..764 | 3725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710134..18710667 | 196..729 | 2655 | 99.8 | Plus |
X | 23542271 | X | 18709895..18710073 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 18710724..18710759 | 729..764 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:27:08 has no hits.
BO18532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:16 Download gff for
BO18532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6585-PA | 1..748 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:22 Download gff for
BO18532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..778 | 8..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:51 Download gff for
BO18532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..778 | 8..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:51 Download gff for
BO18532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18709886..18710073 | 8..195 | 98 | -> | Plus |
X | 18710134..18710667 | 196..729 | 99 | -> | Plus |
X | 18710725..18710759 | 730..764 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:22 Download gff for
BO18532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18603919..18604106 | 8..195 | 98 | -> | Plus |
arm_X | 18604167..18604700 | 196..729 | 99 | -> | Plus |
arm_X | 18604758..18604792 | 730..764 | 100 | | Plus |
BO18532.complete Sequence
1504 bp assembled on 2007-03-23
GenBank Submission: FJ634459
> BO18532.complete
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAGCCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGGAATTGGTGGAAGCCCGAAGTGGTGGCGACAACCTCT
TGCAATGGCTGGCGGAAAGCAAAAGAGGCTTGGGAAAGGAGGAGCTAGCT
GGACATGCCACCACTCTCCTACTGGAGGGCTACGAAACCTCGGCGATGCT
ACTCGCCTTCGCCCTCTACGAATTGGCCCTCAATGAGGATGCACAGCGAC
GGTTACACATCGAATTGGATGAAGTGGCCCAGCGCCACGCTGGCAATCTG
ATTGATCCAGTGGCTCTGGGTGAACTTCGCTATAGCGAAGCTGCGCTCTT
GGAGGCACTGCGTCTTCATCCGGCCATGCAGGCTCTGCAGAAGCGCTGCA
CCAAGACATTCACCCTTCCTGATCAGAAATCAGGAGCGAGCAGCGAACTT
AAGGTGCATTTGGGCACCGTGCTGGTGTTGCCGGTTCAGGCCATTCATTT
AGATCCCGCATTGTATCCGGCACCCAACCAGTTTCGTCCAGAACGCTTTC
TAAATCAGCCACCAATGGGCTGTCGGTTTCTGGGCTTCGGAGCTGGACCA
CGAATGTGTCCGGGAATGCGACTTGGCCTGCTCCAGACGAAGGCTGCACT
GACCACACTACTGCAGGACCACTGCGTCCAGCTGGCGGATGAGGATCAGT
GCAGGGTGGAGGTGTCTCCGCTCACCTTCCTCACCGCCAGCAGGAATGGC
ATTTGGCTGAGTTTCAAGAGAAGGACACGTAGATATGCAAGCTTTCTAGA
CCAT
BO18532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1473 | CG6585-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 31..1500 | 17..1486 | 7350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710134..18710667 | 196..729 | 2670 | 100 | Plus |
X | 23542271 | X | 18710724..18711195 | 729..1200 | 2360 | 100 | Plus |
X | 23542271 | X | 18711257..18711542 | 1201..1486 | 1430 | 100 | Plus |
X | 23542271 | X | 18709895..18710073 | 17..195 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:12:53 has no hits.
BO18532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:07 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 1..1473 | 17..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:06 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..1503 | 8..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:33 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 31..1500 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:07 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..1503 | 8..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:44 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 31..1500 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:44 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18709895..18710073 | 17..195 | 100 | -> | Plus |
X | 18710134..18710667 | 196..729 | 100 | -> | Plus |
X | 18710725..18711195 | 730..1200 | 100 | -> | Plus |
X | 18711257..18711542 | 1201..1488 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:33 Download gff for
BO18532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18603928..18604106 | 17..195 | 100 | -> | Plus |
arm_X | 18604167..18604700 | 196..729 | 100 | -> | Plus |
arm_X | 18604758..18605228 | 730..1200 | 100 | -> | Plus |
arm_X | 18605290..18605575 | 1201..1488 | 99 | | Plus |
BO18532.pep Sequence
Translation from 16 to 1504
> BO18532.pep
MLPLVLFILLAATLLFWKWQGNHWRRLGLEAPFGWPLVGNMLDFALGRRS
YGEIYQEIYTRNPGLKYVGFYRLFNEPAILVRDQELLRQILVGRNFADCA
DNAVYVDHQRDVLASHNPFIANGDRWRVLRADLVPLFTPSRVRQTLPHVA
RACQLLRDQVPLGRFEAKDLATRYTLQVVASAIFGLDAHCLGIHMRVAHE
PSRWLEWLAPLFQPSVWSLLETMSLLHTPRLGRLIGHRYVPLPLQHWFRE
LVEARSGGDNLLQWLAESKRGLGKEELAGHATTLLLEGYETSAMLLAFAL
YELALNEDAQRRLHIELDEVAQRHAGNLIDPVALGELRYSEAALLEALRL
HPAMQALQKRCTKTFTLPDQKSGASSELKVHLGTVLVLPVQAIHLDPALY
PAPNQFRPERFLNQPPMGCRFLGFGAGPRMCPGMRLGLLQTKAALTTLLQ
DHCVQLADEDQCRVEVSPLTFLTASRNGIWLSFKRRTRRYASFLDH
BO18532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-PA | 490 | CG6585-PA | 1..490 | 1..490 | 2581 | 100 | Plus |
Cyp28c1-PB | 505 | CG1895-PB | 5..499 | 2..486 | 513 | 32.3 | Plus |
Cyp28c1-PA | 505 | CG1895-PA | 5..499 | 2..486 | 513 | 32.3 | Plus |
Cyp6a13-PA | 493 | CG2397-PA | 1..485 | 1..481 | 493 | 29.8 | Plus |
Cyp28d1-PA | 502 | CG10833-PA | 10..501 | 5..486 | 483 | 27.3 | Plus |