Clone BO18532 Report

Search the DGRC for BO18532

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCyp308a1-RA
Protein status:BO18532.pep: validated full length
Sequenced Size:1504

Clone Sequence Records

BO18532.3prime Sequence

828 bp (757 high quality bases) assembled on 2006-10-13

> BO18532.3prime
ATGGTCTAGAAAGCTTGCATATCTACGTGTCCTTCTCTTGAAACTCAGCC
AAATGCCATTCCTGCTGGCGGTGAGGAAGGTGAGCGGAGACACCTCCACC
CTGCACTGATCCTCATCCGCCAGCTGGACGCAGTGGTCCTGCAGTAGTGT
GGTCAGTGCAGCCTTCGTCTGGAGCAGGCCAAGTCGCATTCCCGGACACA
TTCGTGGTCCAGCTCCGAAGCCCAGAAACCGACAGCCCATTGGTGGCTGA
TTTAGAAAGCGTTCTGGACGAAACTGGTTGGGTGCCGGATACAATGCGGG
ATCTAAATGAATGGCCTGAACCGGCAACACCAGCACGGTGCCCAAATGCA
CCTTAAGTTCGCTGCTCGCTCCTGATTTCTGATCAGGAAGGGTGAATGTC
TTGGTGCAGCGCTTCTGCAGAGCCTGCATGGCCGGATGAAGACGCAGTGC
CTCCAAGAGCGCAGCTTCGCTATAGCGAAGTTCACCCAGAGCCACTGGAT
CAATCAGATTGCCAGCGTGGCGCTGGGCCACTTCATCCAATTCGATGTGT
AACCGTCGCTGTGCATCCTCATTGAGGGCCAATTCGTAGAGGGCGAAGGC
GAGTAGCATCGCCGAGGTTTCGTAGCCCTCCAGTAGGAGAGTGGTGGCAT
GTCCAGCTAGCTCCTCCTTTCCCAAGCCTCTTTTGCTTTCCGCCAGCCAT
TGCAAGAGGTTGTCGCCACCACTTCGGGCTTCCACCAATTCCCTGAACCA
GTGCTGCAGGGGCAGGGGTACGTATCGGTGGCCAATGAGTCTACCCAATC
GAGGCGTGTGCAACAGTGACATGGTCTC

BO18532.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6585-PA 1473 Cyp308a1-RA 661..1470 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp308a1-RA 1596 CG6585-RA 691..1500 828..19 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18710724..18711195 776..305 2360 100 Minus
X 23542271 X 18711257..18711542 304..19 1430 100 Minus
X 23542271 X 18710615..18710667 828..776 265 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:27:02 has no hits.

BO18532.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:16 Download gff for BO18532.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6585-PA 661..1473 15..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:37:13 Download gff for BO18532.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 691..1503 15..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:06 Download gff for BO18532.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 691..1503 15..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:06 Download gff for BO18532.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18710615..18710667 776..828 100 -> Minus
X 18710725..18711195 305..775 100 -> Minus
X 18711257..18711545 15..304 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:37:13 Download gff for BO18532.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18604648..18604700 776..828 100 -> Minus
arm_X 18604758..18605228 305..775 100 -> Minus
arm_X 18605290..18605578 15..304 99   Minus

BO18532.5prime Sequence

764 bp (731 high quality bases) assembled on 2006-10-13

> BO18532.5prime
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAACCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGG

BO18532.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6585-PA 1473 Cyp308a1-RA 1..748 17..764 3715 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp308a1-RA 1596 CG6585-RA 31..778 17..764 3725 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18710134..18710667 196..729 2655 99.8 Plus
X 23542271 X 18709895..18710073 17..195 895 100 Plus
X 23542271 X 18710724..18710759 729..764 180 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:27:08 has no hits.

BO18532.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:16 Download gff for BO18532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6585-PA 1..748 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:22 Download gff for BO18532.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 22..778 8..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:51 Download gff for BO18532.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 22..778 8..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:51 Download gff for BO18532.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18709886..18710073 8..195 98 -> Plus
X 18710134..18710667 196..729 99 -> Plus
X 18710725..18710759 730..764 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:22 Download gff for BO18532.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18603919..18604106 8..195 98 -> Plus
arm_X 18604167..18604700 196..729 99 -> Plus
arm_X 18604758..18604792 730..764 100   Plus

BO18532.complete Sequence

1504 bp assembled on 2007-03-23

GenBank Submission: FJ634459

> BO18532.complete
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAGCCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGGAATTGGTGGAAGCCCGAAGTGGTGGCGACAACCTCT
TGCAATGGCTGGCGGAAAGCAAAAGAGGCTTGGGAAAGGAGGAGCTAGCT
GGACATGCCACCACTCTCCTACTGGAGGGCTACGAAACCTCGGCGATGCT
ACTCGCCTTCGCCCTCTACGAATTGGCCCTCAATGAGGATGCACAGCGAC
GGTTACACATCGAATTGGATGAAGTGGCCCAGCGCCACGCTGGCAATCTG
ATTGATCCAGTGGCTCTGGGTGAACTTCGCTATAGCGAAGCTGCGCTCTT
GGAGGCACTGCGTCTTCATCCGGCCATGCAGGCTCTGCAGAAGCGCTGCA
CCAAGACATTCACCCTTCCTGATCAGAAATCAGGAGCGAGCAGCGAACTT
AAGGTGCATTTGGGCACCGTGCTGGTGTTGCCGGTTCAGGCCATTCATTT
AGATCCCGCATTGTATCCGGCACCCAACCAGTTTCGTCCAGAACGCTTTC
TAAATCAGCCACCAATGGGCTGTCGGTTTCTGGGCTTCGGAGCTGGACCA
CGAATGTGTCCGGGAATGCGACTTGGCCTGCTCCAGACGAAGGCTGCACT
GACCACACTACTGCAGGACCACTGCGTCCAGCTGGCGGATGAGGATCAGT
GCAGGGTGGAGGTGTCTCCGCTCACCTTCCTCACCGCCAGCAGGAATGGC
ATTTGGCTGAGTTTCAAGAGAAGGACACGTAGATATGCAAGCTTTCTAGA
CCAT

BO18532.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp308a1-RA 1473 CG6585-PA 1..1470 17..1486 7350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp308a1-RA 1596 CG6585-RA 31..1500 17..1486 7350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18710134..18710667 196..729 2670 100 Plus
X 23542271 X 18710724..18711195 729..1200 2360 100 Plus
X 23542271 X 18711257..18711542 1201..1486 1430 100 Plus
X 23542271 X 18709895..18710073 17..195 895 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:12:53 has no hits.

BO18532.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:07 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 1..1473 17..1490 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:06 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 22..1503 8..1490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:33 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 31..1500 17..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:07 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 22..1503 8..1490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:44 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp308a1-RA 31..1500 17..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:44 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
X 18709895..18710073 17..195 100 -> Plus
X 18710134..18710667 196..729 100 -> Plus
X 18710725..18711195 730..1200 100 -> Plus
X 18711257..18711542 1201..1488 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:33 Download gff for BO18532.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18603928..18604106 17..195 100 -> Plus
arm_X 18604167..18604700 196..729 100 -> Plus
arm_X 18604758..18605228 730..1200 100 -> Plus
arm_X 18605290..18605575 1201..1488 99   Plus

BO18532.pep Sequence

Translation from 16 to 1504

> BO18532.pep
MLPLVLFILLAATLLFWKWQGNHWRRLGLEAPFGWPLVGNMLDFALGRRS
YGEIYQEIYTRNPGLKYVGFYRLFNEPAILVRDQELLRQILVGRNFADCA
DNAVYVDHQRDVLASHNPFIANGDRWRVLRADLVPLFTPSRVRQTLPHVA
RACQLLRDQVPLGRFEAKDLATRYTLQVVASAIFGLDAHCLGIHMRVAHE
PSRWLEWLAPLFQPSVWSLLETMSLLHTPRLGRLIGHRYVPLPLQHWFRE
LVEARSGGDNLLQWLAESKRGLGKEELAGHATTLLLEGYETSAMLLAFAL
YELALNEDAQRRLHIELDEVAQRHAGNLIDPVALGELRYSEAALLEALRL
HPAMQALQKRCTKTFTLPDQKSGASSELKVHLGTVLVLPVQAIHLDPALY
PAPNQFRPERFLNQPPMGCRFLGFGAGPRMCPGMRLGLLQTKAALTTLLQ
DHCVQLADEDQCRVEVSPLTFLTASRNGIWLSFKRRTRRYASFLDH

BO18532.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp308a1-PA 490 CG6585-PA 1..490 1..490 2581 100 Plus
Cyp28c1-PB 505 CG1895-PB 5..499 2..486 513 32.3 Plus
Cyp28c1-PA 505 CG1895-PA 5..499 2..486 513 32.3 Plus
Cyp6a13-PA 493 CG2397-PA 1..485 1..481 493 29.8 Plus
Cyp28d1-PA 502 CG10833-PA 10..501 5..486 483 27.3 Plus