Clone Sequence Records
BO18535.3prime Sequence
854 bp (795 high quality bases) assembled on 2006-10-13
> BO18535.3prime
ATGGTCTAGAAAGCTTGCATCAGTGTTGAGCAAAGGAATTATGAAGAACT
GAATGAATATCTCCTCCTGGCTATCGCCCTGCATTACCAGATGCAGTTCT
AGGAGGCCAACGGAGTTCGTTTTAATGGCCACCTTGGTGGCCGACTGCAT
CGCCTTGTTGGTCATGCGGATCTGCTGGCTCTTGTAGCGAGCCACCACCG
TCTGTTTGCAGTTAAACATCATCATCATGGGACTCGTCTTTGCCACTTCG
ACGCTGAACACCGCCTGCATGATCCCCACTGTGGTGATCTTAAAGTGCGG
GCGGTTCGGCGATGTCACGAACTCGAACTCCTCCGCGGACTTCTCCAGCT
CATTGAACACCTTCGATAGGTTCGGTCCGCGTACGAAAATAACATTAAGA
TCCGGATCCTTCAGATTCTGATCGTAGTCAATGGGCTCATCGCAGTCCAT
GGTTTTGATGGCGCACTCCGTGCTCACATCATCGTCGTCGTGCGGATACA
GAATTATCTTCAGGGGATCGCCCTTATCCCTGTACATCATTCGCAGGCTG
CAATCGGCGGATCCGAAGAGACTGAGACACTCGGACAGCACATTCATTTT
CACACCGAAGCACTGGAAGTCCTGCACACGGAACTCCATGAAGGCACCCG
GCGGCATGAAAAGCGTTGCCTGGATGGACTTGCCCTGCTCCACGGTGATG
CGCAGACCATCTTCGGAGACTTGCACCATCCCATAATCATTAAAGCAGAT
TGACTTGATGGCCTGGATGAAGGTCTTGATGTGCTCCACTCGAGCGACGA
ATTTGCAGTCGCCGTAGGGCGATGGCTCCACATCAGTCATGTCGACTGAT
AACT
BO18535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3240-PA | 825 | Rad1-RA | 1..822 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1434 | 840..19 | 4110 | 100 | Minus |
| CG34314-RA | 1484 | CG34314-RA | 613..1434 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573486..2574202 | 19..735 | 3585 | 100 | Plus |
| 2L | 23513712 | 2L | 2574276..2574380 | 736..840 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:28:21 has no hits.
BO18535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:18 Download gff for
BO18535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3240-PA | 1..825 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:35 Download gff for
BO18535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1437 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:43 Download gff for
BO18535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1437 | 15..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:43 Download gff for
BO18535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573488..2574202 | 21..735 | 100 | <- | Plus |
| 2L | 2574276..2574380 | 736..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:35 Download gff for
BO18535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573488..2574202 | 21..735 | 100 | <- | Plus |
| arm_2L | 2574276..2574380 | 736..840 | 100 | | Plus |
BO18535.5prime Sequence
854 bp (720 high quality bases) assembled on 2006-10-13
> BO18535.5prime
GAAGTTATCAGTCGACATGACTGATGTGGAGCCATCGCCCTACGGCGACT
GCAAATTCGTCGCTCGAGTGGAGCACATCAAGACCTTCATCCAGGCCATC
AAGTCAATCTGCTTTAATGATTATGGGATGGTGCAAGTCTCCGAAGATGG
TCTGCGCATCACCGTGGAGCAGGGCAAGTCCATCCAGGCAACGCTTTTCA
TGCCGCCGGGTGCCTTCATGGAGTTCCGTGTGCAGGACTTCCAGTGCTTC
GGTGTGAAAATGAATGTGCTGTCCGAGTGTCTCAGTCTCTTCGGATCCGC
CGATTGCAGCCTGCGAATGATGTACAGGGATAAGGGCGATCCCCTGAAGA
TAATTCTGTATCCGCACGACGACGATGATGTGAGCACGGAGTGCGCCATC
AAAACCATGGACTGCGATGAGCCCATTGACTACGATCAGAATCTGAAGGA
TCCGGATCTTAATGTTATTTTCGTACGCGGACCGAACCTATCGAAGGTGT
TCAATGAGCTGGAGAAGTCCGCGGAGGAGTTCGAGTTCGTGACATCGCCG
AACCGCCCGCACTTTAAGATCACCACAGTGGGGATCATGCAGGCGGTGTT
CAGCGTCGAAGTGGCAAAGACGAGTCCCATGATGATGATGTTTAACTGCA
AACAGACGGTGGTGGCTCGCTACAAGAGCCAGCAGATCCGCATGACCAAC
AAGGCGATGCAGTCGGCCACCAAGGTGGCCATTANAACGAACTCCGTTGG
CCTCCTAGAACTGCATCTGGTAATGCAGGGCGATAGCCAGGAGGAGATAT
TCATTCAGTTCTTCATAATTCCTTTGCTCAACACTGATGCAAGCTTTCTA
GACC
BO18535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3240-PA | 825 | Rad1-RA | 1..822 | 17..838 | 4091 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1434 | 17..838 | 4099 | 99.9 | Plus |
| CG34314-RA | 1484 | CG34314-RA | 613..1434 | 17..838 | 4099 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573486..2574202 | 838..122 | 3574 | 99.9 | Minus |
| 2L | 23513712 | 2L | 2574276..2574380 | 121..17 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:06:39 has no hits.
BO18535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:18 Download gff for
BO18535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3240-PA | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:08 Download gff for
BO18535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1437 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:08 Download gff for
BO18535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1437 | 17..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:08 Download gff for
BO18535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573488..2574202 | 122..836 | 99 | <- | Minus |
| 2L | 2574276..2574380 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:08 Download gff for
BO18535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573488..2574202 | 122..836 | 99 | <- | Minus |
| arm_2L | 2574276..2574380 | 17..121 | 100 | | Minus |
BO18535.complete Sequence
856 bp assembled on 2006-10-11
GenBank Submission: FJ634460
> BO18535.complete
GAAGTTATCAGTCGACATGACTGATGTGGAGCCATCGCCCTACGGCGACT
GCAAATTCGTCGCTCGAGTGGAGCACATCAAGACCTTCATCCAGGCCATC
AAGTCAATCTGCTTTAATGATTATGGGATGGTGCAAGTCTCCGAAGATGG
TCTGCGCATCACCGTGGAGCAGGGCAAGTCCATCCAGGCAACGCTTTTCA
TGCCGCCGGGTGCCTTCATGGAGTTCCGTGTGCAGGACTTCCAGTGCTTC
GGTGTGAAAATGAATGTGCTGTCCGAGTGTCTCAGTCTCTTCGGATCCGC
CGATTGCAGCCTGCGAATGATGTACAGGGATAAGGGCGATCCCCTGAAGA
TAATTCTGTATCCGCACGACGACGATGATGTGAGCACGGAGTGCGCCATC
AAAACCATGGACTGCGATGAGCCCATTGACTACGATCAGAATCTGAAGGA
TCCGGATCTTAATGTTATTTTCGTACGCGGACCGAACCTATCGAAGGTGT
TCAATGAGCTGGAGAAGTCCGCGGAGGAGTTCGAGTTCGTGACATCGCCG
AACCGCCCGCACTTTAAGATCACCACAGTGGGGATCATGCAGGCGGTGTT
CAGCGTCGAAGTGGCAAAGACGAGTCCCATGATGATGATGTTTAACTGCA
AACAGACGGTGGTGGCTCGCTACAAGAGCCAGCAGATCCGCATGACCAAC
AAGGCGATGCAGTCGGCCACCAAGGTGGCCATTAAAACGAACTCCGTTGG
CCTCCTAGAACTGCATCTGGTAATGCAGGGCGATAGCCAGGAGGAGATAT
TCATTCAGTTCTTCATAATTCCTTTGCTCAACACTGATGCAAGCTTTCTA
GACCAT
BO18535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 825 | CG3240-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1434 | 17..838 | 4110 | 100 | Plus |
| CG34314-RA | 1484 | CG34314-RA | 613..1434 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573486..2574202 | 838..122 | 3585 | 100 | Minus |
| 2L | 23513712 | 2L | 2574276..2574380 | 121..17 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:00 has no hits.
BO18535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:06 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 1..825 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:46 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 641..1465 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:14 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1434 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:06 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 641..1465 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:41 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1434 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:41 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573484..2574202 | 122..840 | 99 | <- | Minus |
| 2L | 2574276..2574380 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:14 Download gff for
BO18535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573484..2574202 | 122..840 | 99 | <- | Minus |
| arm_2L | 2574276..2574380 | 17..121 | 100 | | Minus |
BO18535.pep Sequence
Translation from 16 to 856
> BO18535.pep
MTDVEPSPYGDCKFVARVEHIKTFIQAIKSICFNDYGMVQVSEDGLRITV
EQGKSIQATLFMPPGAFMEFRVQDFQCFGVKMNVLSECLSLFGSADCSLR
MMYRDKGDPLKIILYPHDDDDVSTECAIKTMDCDEPIDYDQNLKDPDLNV
IFVRGPNLSKVFNELEKSAEEFEFVTSPNRPHFKITTVGIMQAVFSVEVA
KTSPMMMMFNCKQTVVARYKSQQIRMTNKAMQSATKVAIKTNSVGLLELH
LVMQGDSQEEIFIQFFIIPLLNTDASFLDH
BO18535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-PA | 274 | CG3240-PA | 1..274 | 1..274 | 1423 | 100 | Plus |
