Clone Sequence Records
BO18539.3prime Sequence
395 bp (395 high quality bases) assembled on 2006-10-13
> BO18539.3prime
ATGGTCTAGAAAGCTTGCCTCATCAAAGCACCTCAAGCTATCAAACTTGG
CTATAATCGGTCTAATCAGTCCGACTCCGGTGGTAAAGGTTTGTACGAGA
CATTCCGGTCGATCGTATATCGCCTTCTTGCCAAACTGATGGGCCACCCT
AATAAATCTGAGAATGCTACCAGTTAGTTTGATTTTCGGCTGAAAATCAA
CGCAATCGGATAGGAGGCTTATGGCCGTTATAGAGTTCTCGATCATTAGG
GCACCGGCATCAGTCACCACTTCCAAACATCGCAGATAGTGATCGAGTTC
CGAACTTATGGCGGCTTGAACTTGCGACTTTTGGCATAAAGCCAAAAAGC
TTAGTAACAAGGCGATCTTAATCAAATGCATGTCGACTGATAACT
BO18539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8626-PA | 366 | Acp53C14a-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..406 | 381..19 | 1815 | 100 | Minus |
Acp53C14a-RA | 479 | CG8626-RA | 44..406 | 381..19 | 1815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748133..16748453 | 19..339 | 1605 | 100 | Plus |
2R | 25286936 | 2R | 16748506..16748547 | 340..381 | 210 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 329..357 | 109 | 86.2 | Plus |
BO18539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:22 Download gff for
BO18539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8626-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:30 Download gff for
BO18539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..392 | 14..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:51 Download gff for
BO18539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..410 | 14..381 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:51 Download gff for
BO18539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748129..16748453 | 14..339 | 99 | <- | Plus |
2R | 16748506..16748547 | 340..381 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:30 Download gff for
BO18539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635634..12635958 | 14..339 | 99 | <- | Plus |
arm_2R | 12636011..12636052 | 340..381 | 100 | | Plus |
BO18539.5prime Sequence
395 bp (395 high quality bases) assembled on 2006-10-13
> BO18539.5prime
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGGCAAGCTTTCTAGACC
BO18539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8626-PA | 366 | Acp53C14a-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..406 | 17..379 | 1815 | 100 | Plus |
Acp53C14a-RA | 479 | CG8626-RA | 44..406 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748133..16748453 | 379..59 | 1605 | 100 | Minus |
2R | 25286936 | 2R | 16748506..16748547 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 69..41 | 109 | 86.2 | Minus |
BO18539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:22 Download gff for
BO18539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8626-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:15 Download gff for
BO18539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..392 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:14 Download gff for
BO18539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..410 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:14 Download gff for
BO18539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748129..16748453 | 59..384 | 99 | <- | Minus |
2R | 16748506..16748547 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:15 Download gff for
BO18539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635634..12635958 | 59..384 | 99 | <- | Minus |
arm_2R | 12636011..12636052 | 17..58 | 100 | | Minus |
BO18539.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ634462
> BO18539.complete
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGGCAAGCTTTCTAGACCAT
BO18539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 366 | CG8626-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
Acp53C14a-RA | 366 | CG8626-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..406 | 17..379 | 1815 | 100 | Plus |
Acp53C14a-RA | 479 | CG8626-RA | 44..406 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748133..16748453 | 379..59 | 1605 | 100 | Minus |
2R | 25286936 | 2R | 16748506..16748547 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 69..41 | 109 | 86.2 | Minus |
BO18539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:07 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:47 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..392 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:26 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..388 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:07 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 15..381 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:52 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..406 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:52 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748131..16748453 | 59..381 | 99 | <- | Minus |
2R | 16748506..16748547 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:26 Download gff for
BO18539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635636..12635958 | 59..381 | 99 | <- | Minus |
arm_2R | 12636011..12636052 | 17..58 | 100 | | Minus |
BO18539.pep Sequence
Translation from 16 to 397
> BO18539.pep
MHLIKIALLLSFLALCQKSQVQAAISSELDHYLRCLEVVTDAGALMIENS
ITAISLLSDCVDFQPKIKLTGSILRFIRVAHQFGKKAIYDRPECLVQTFT
TGVGLIRPIIAKFDSLRCFDEASFLDH
BO18539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-PB | 121 | CG8626-PB | 1..121 | 1..121 | 608 | 100 | Plus |
Acp53C14a-PA | 121 | CG8626-PA | 1..121 | 1..121 | 608 | 100 | Plus |
Acp53Ea-PA | 120 | CG8622-PA | 1..120 | 1..121 | 155 | 28.1 | Plus |
Acp53C14b-PB | 132 | CG15616-PB | 1..131 | 1..125 | 140 | 26 | Plus |
Acp53C14b-PA | 132 | CG15616-PA | 1..131 | 1..125 | 140 | 26 | Plus |