Clone Sequence Records
BO18540.3prime Sequence
348 bp (307 high quality bases) assembled on 2006-10-13
> BO18540.3prime
ATGGTCTAGAAAGCTTGCGTAGTGGTGTTCGTGCAGCTCCTCATGATGAT
GCACTGGAGCGGTCTTGTGGACCACGGCGTTGAATCCATTGTGCTTGTCG
GCGGTGTAGTCCACGGTGCGGATGGAACCATCGGGCTCCACCAGGGAGTA
CTGTCCCTTGACGGTGTCACCATCGCGGGTCTCGTGCTGCGACTTCACAT
CTCCGGTGTGGAAGTCATTCACGCCGTACTTGAAAGCATATTTGGGAGGA
GCATAGTAATCCACATGTTCATCATGTCCGTGAGACTCGTGGGTCTCGTA
GTGGGGCTCAGCGTGTTCGAGGTGACCGTGCTCCTCGCCCAGTGAGAT
BO18540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7076-PA | 489 | CG7076-RA | 157..486 | 348..19 | 1650 | 100 | Minus |
CG7072-PA | 1224 | CG7072-RA | 391..452 | 120..59 | 160 | 90.3 | Minus |
CG13935-PA | 585 | CG13935-RA | 181..239 | 162..104 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 222..551 | 348..19 | 1650 | 100 | Minus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 232..60 | 445 | 83.8 | Minus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 232..60 | 445 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337912..8338145 | 252..19 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 8337733..8337829 | 348..252 | 485 | 100 | Minus |
3L | 28110227 | 3L | 1840995..1841167 | 60..232 | 445 | 83.8 | Plus |
3L | 28110227 | 3L | 8326839..8326933 | 153..59 | 325 | 89.5 | Minus |
3L | 28110227 | 3L | 1834470..1834526 | 97..153 | 180 | 87.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:28:48 has no hits.
BO18540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:23 Download gff for
BO18540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7076-PA | 157..489 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:38 Download gff for
BO18540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 222..561 | 7..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:46 Download gff for
BO18540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 222..561 | 7..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:46 Download gff for
BO18540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337733..8337828 | 253..348 | 100 | -> | Minus |
3L | 8337912..8338155 | 7..252 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:38 Download gff for
BO18540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330833..8330928 | 253..348 | 100 | -> | Minus |
arm_3L | 8331012..8331255 | 7..252 | 97 | | Minus |
BO18540.5prime Sequence
518 bp (518 high quality bases) assembled on 2006-10-13
> BO18540.5prime
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACGCAAGCTTTCTAGACC
BO18540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7076-PA | 489 | CG7076-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
CG7072-PA | 1224 | CG7072-RA | 391..452 | 401..462 | 160 | 90.3 | Plus |
CG13935-PA | 585 | CG13935-RA | 181..239 | 359..417 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 66..551 | 17..502 | 2430 | 100 | Plus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 289..461 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337587..8337829 | 27..269 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 8337912..8338145 | 269..502 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 1840995..1841167 | 461..289 | 445 | 83.8 | Minus |
3L | 28110227 | 3L | 8326839..8326933 | 368..462 | 325 | 89.5 | Plus |
3L | 28110227 | 3L | 1834470..1834526 | 424..368 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:33:54 has no hits.
BO18540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:24 Download gff for
BO18540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7076-PA | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:37 Download gff for
BO18540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..561 | 17..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:07 Download gff for
BO18540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..561 | 17..514 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:07 Download gff for
BO18540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337587..8337828 | 27..268 | 100 | -> | Plus |
3L | 8337912..8338155 | 269..514 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:37 Download gff for
BO18540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330687..8330928 | 27..268 | 100 | -> | Plus |
arm_3L | 8331012..8331255 | 269..514 | 97 | | Plus |
BO18540.complete Sequence
520 bp assembled on 2006-10-11
GenBank Submission: FJ634463
> BO18540.complete
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACGCAAGCTTTCTAGACCAT
BO18540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 489 | CG7076-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Cpr62Bc-RB | 543 | CG1919-PB | 168..340 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 543 | CG1919-PA | 168..340 | 289..461 | 445 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 66..551 | 17..502 | 2430 | 100 | Plus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 289..461 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337587..8337829 | 27..269 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 8337912..8338145 | 269..502 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 1840995..1841167 | 461..289 | 445 | 83.8 | Minus |
3L | 28110227 | 3L | 8326839..8326933 | 368..462 | 325 | 89.5 | Plus |
3L | 28110227 | 3L | 1834470..1834526 | 424..368 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:58:22 has no hits.
BO18540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:46 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:18 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..561 | 17..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:16 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..551 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:46 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..561 | 17..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:24 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..551 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:24 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337587..8337828 | 27..268 | 100 | -> | Plus |
3L | 8337912..8338145 | 269..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:16 Download gff for
BO18540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330687..8330928 | 27..268 | 100 | -> | Plus |
arm_3L | 8331012..8331245 | 269..504 | 99 | | Plus |
BO18540.pep Sequence
Translation from 16 to 520
> BO18540.pep
MAFKYLIFASALCLSLAYPLEHQYYEESHGYEHLAHHEPEPIHEYGHHQI
ERISLGEEHGHLEHAEPHYETHESHGHDEHVDYYAPPKYAFKYGVNDFHT
GDVKSQHETRDGDTVKGQYSLVEPDGSIRTVDYTADKHNGFNAVVHKTAP
VHHHEELHEHHYASFLDH
BO18540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-PA | 162 | CG7076-PA | 1..162 | 1..162 | 921 | 100 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 17..119 | 54..154 | 349 | 66.3 | Plus |
Cpr62Bc-PA | 180 | CG1919-PA | 17..119 | 54..154 | 349 | 66.3 | Plus |
CG34461-PB | 138 | CG34461-PB | 20..138 | 58..162 | 322 | 58 | Plus |
CG34461-PA | 138 | CG34461-PA | 20..138 | 58..162 | 322 | 58 | Plus |