Clone BO18540 Report

Search the DGRC for BO18540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCpr66Cb-RA
Protein status:BO18540.pep: validated full length
Sequenced Size:520

Clone Sequence Records

BO18540.3prime Sequence

348 bp (307 high quality bases) assembled on 2006-10-13

> BO18540.3prime
ATGGTCTAGAAAGCTTGCGTAGTGGTGTTCGTGCAGCTCCTCATGATGAT
GCACTGGAGCGGTCTTGTGGACCACGGCGTTGAATCCATTGTGCTTGTCG
GCGGTGTAGTCCACGGTGCGGATGGAACCATCGGGCTCCACCAGGGAGTA
CTGTCCCTTGACGGTGTCACCATCGCGGGTCTCGTGCTGCGACTTCACAT
CTCCGGTGTGGAAGTCATTCACGCCGTACTTGAAAGCATATTTGGGAGGA
GCATAGTAATCCACATGTTCATCATGTCCGTGAGACTCGTGGGTCTCGTA
GTGGGGCTCAGCGTGTTCGAGGTGACCGTGCTCCTCGCCCAGTGAGAT

BO18540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7076-PA 489 CG7076-RA 157..486 348..19 1650 100 Minus
CG7072-PA 1224 CG7072-RA 391..452 120..59 160 90.3 Minus
CG13935-PA 585 CG13935-RA 181..239 162..104 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 222..551 348..19 1650 100 Minus
Cpr62Bc-RB 1017 CG1919-RB 248..420 232..60 445 83.8 Minus
Cpr62Bc-RA 1134 CG1919-RA 248..420 232..60 445 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337912..8338145 252..19 1170 100 Minus
3L 28110227 3L 8337733..8337829 348..252 485 100 Minus
3L 28110227 3L 1840995..1841167 60..232 445 83.8 Plus
3L 28110227 3L 8326839..8326933 153..59 325 89.5 Minus
3L 28110227 3L 1834470..1834526 97..153 180 87.7 Plus
Blast to na_te.dros performed on 2015-02-02 18:28:48 has no hits.

BO18540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:23 Download gff for BO18540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7076-PA 157..489 15..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:38 Download gff for BO18540.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 222..561 7..348 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:46 Download gff for BO18540.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 222..561 7..348 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:46 Download gff for BO18540.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8337733..8337828 253..348 100 -> Minus
3L 8337912..8338155 7..252 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:38 Download gff for BO18540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330833..8330928 253..348 100 -> Minus
arm_3L 8331012..8331255 7..252 97   Minus

BO18540.5prime Sequence

518 bp (518 high quality bases) assembled on 2006-10-13

> BO18540.5prime
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACGCAAGCTTTCTAGACC

BO18540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7076-PA 489 CG7076-RA 1..486 17..502 2430 100 Plus
CG7072-PA 1224 CG7072-RA 391..452 401..462 160 90.3 Plus
CG13935-PA 585 CG13935-RA 181..239 359..417 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 66..551 17..502 2430 100 Plus
Cpr62Bc-RB 1017 CG1919-RB 248..420 289..461 445 83.8 Plus
Cpr62Bc-RA 1134 CG1919-RA 248..420 289..461 445 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337587..8337829 27..269 1215 100 Plus
3L 28110227 3L 8337912..8338145 269..502 1170 100 Plus
3L 28110227 3L 1840995..1841167 461..289 445 83.8 Minus
3L 28110227 3L 8326839..8326933 368..462 325 89.5 Plus
3L 28110227 3L 1834470..1834526 424..368 180 87.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:33:54 has no hits.

BO18540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:24 Download gff for BO18540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7076-PA 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:37 Download gff for BO18540.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..561 17..514 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:07 Download gff for BO18540.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..561 17..514 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:07 Download gff for BO18540.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8337587..8337828 27..268 100 -> Plus
3L 8337912..8338155 269..514 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:37 Download gff for BO18540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330687..8330928 27..268 100 -> Plus
arm_3L 8331012..8331255 269..514 97   Plus

BO18540.complete Sequence

520 bp assembled on 2006-10-11

GenBank Submission: FJ634463

> BO18540.complete
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACGCAAGCTTTCTAGACCAT

BO18540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 489 CG7076-PA 1..486 17..502 2430 100 Plus
Cpr62Bc-RB 543 CG1919-PB 168..340 289..461 445 83.8 Plus
Cpr62Bc-RA 543 CG1919-PA 168..340 289..461 445 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 66..551 17..502 2430 100 Plus
Cpr62Bc-RB 1017 CG1919-RB 248..420 289..461 445 83.8 Plus
Cpr62Bc-RA 1134 CG1919-RA 248..420 289..461 445 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337587..8337829 27..269 1215 100 Plus
3L 28110227 3L 8337912..8338145 269..502 1170 100 Plus
3L 28110227 3L 1840995..1841167 461..289 445 83.8 Minus
3L 28110227 3L 8326839..8326933 368..462 325 89.5 Plus
3L 28110227 3L 1834470..1834526 424..368 180 87.7 Minus
Blast to na_te.dros performed on 2014-11-27 12:58:22 has no hits.

BO18540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:46 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:18 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..561 17..514 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:16 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..551 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:46 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..561 17..514 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:24 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..551 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:24 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8337587..8337828 27..268 100 -> Plus
3L 8337912..8338145 269..504 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:16 Download gff for BO18540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330687..8330928 27..268 100 -> Plus
arm_3L 8331012..8331245 269..504 99   Plus

BO18540.pep Sequence

Translation from 16 to 520

> BO18540.pep
MAFKYLIFASALCLSLAYPLEHQYYEESHGYEHLAHHEPEPIHEYGHHQI
ERISLGEEHGHLEHAEPHYETHESHGHDEHVDYYAPPKYAFKYGVNDFHT
GDVKSQHETRDGDTVKGQYSLVEPDGSIRTVDYTADKHNGFNAVVHKTAP
VHHHEELHEHHYASFLDH

BO18540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-PA 162 CG7076-PA 1..162 1..162 921 100 Plus
Cpr62Bc-PB 180 CG1919-PB 17..119 54..154 349 66.3 Plus
Cpr62Bc-PA 180 CG1919-PA 17..119 54..154 349 66.3 Plus
CG34461-PB 138 CG34461-PB 20..138 58..162 322 58 Plus
CG34461-PA 138 CG34461-PA 20..138 58..162 322 58 Plus