Clone BO18541 Report

Search the DGRC for BO18541

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG7949-RA
Protein status:BO18541.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO18541.3prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO18541.3prime
ATGGTCTAGAAAGCTTGCACCCTTGGCGGCGATGCACTGGTTGATCACCT
CGGCGAGGTGATTGTTCTCCAGGGCGGCGGCCACTCGTTCCTTGTCTGCC
AGCTGCTTGTTCACCGCCAGCTCGGAGGCGTGGGTGCCGGGCGTTATTTC
CACGGTGACCTTAAAGCGAGGTGGCAGCGAGCGGAGCAACTTCACCCGGA
TGGAGAGGCCAATCAAAGTGGCCATCGAGCAATGGGGAATCGTCGGGGTG
AAGCTGATGTGCACGGAATTCTGGCTATCGTTTATCCGGATTAGATCTTC
CTGCACCACATGCAGCTCCTCCAGGGTCAAAGGATGTTCCGGGTCATTAA
TATTTCTGATGAGATCGAAAATCTCTCGTTTGTCAAATGGATCGGGCACG
TTTTCGTCTTCTTCGTTGGCGGTTAATACCCTTTCCTTGATTCTGTCGTA
GACATTGGGGTTGATGTTCTCGATTTCCGTGGGCATGTCGACTGATAACT

BO18541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 471 CG7949-RA 1..468 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..541 486..19 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883485 366..19 1740 100 Minus
3L 28110227 3L 10882963..10883083 486..366 605 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:51:25 has no hits.

BO18541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:24 Download gff for BO18541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-PA 1..471 15..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:52 Download gff for BO18541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 12..494 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:55 Download gff for BO18541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 12..494 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:55 Download gff for BO18541.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10882954..10883083 366..494 96 -> Minus
3L 10883139..10883490 12..365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:52 Download gff for BO18541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876054..10876183 366..494 96 -> Minus
arm_3L 10876239..10876590 12..365 99   Minus

BO18541.5prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO18541.5prime
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTGCAAGCTTTCTAGACC

BO18541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 471 CG7949-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..541 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883485 137..484 1740 100 Plus
3L 28110227 3L 10882963..10883083 17..137 605 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:31:48 has no hits.

BO18541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:25 Download gff for BO18541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-PA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:36 Download gff for BO18541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 9..491 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:06 Download gff for BO18541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 9..491 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:06 Download gff for BO18541.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10882954..10883083 9..137 96 -> Plus
3L 10883139..10883490 138..491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:36 Download gff for BO18541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876054..10876183 9..137 96 -> Plus
arm_3L 10876239..10876590 138..491 99   Plus

BO18541.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ634464

> BO18541.complete
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTGCAAGCTTTCTAGACC
AT

BO18541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 471 CG7949-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..541 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883485 137..484 1740 100 Plus
3L 28110227 3L 10882963..10883083 17..137 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:37:21 has no hits.

BO18541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:47 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:19 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:02 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 74..541 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:47 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:40 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 74..541 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:40 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10882963..10883083 17..137 100 -> Plus
3L 10883139..10883485 138..486 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:02 Download gff for BO18541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876063..10876183 17..137 100 -> Plus
arm_3L 10876239..10876585 138..486 99   Plus

BO18541.pep Sequence

Translation from 16 to 502

> BO18541.pep
MPTEIENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPE
HPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKL
LRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQ
CIAAKGASFLDH

BO18541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 156 CG7949-PA 1..156 1..156 799 100 Plus
CG30152-PD 152 CG30152-PD 31..148 39..152 301 51.7 Plus
CG30152-PC 218 CG30152-PC 97..214 39..152 301 51.7 Plus
CG30152-PB 218 CG30152-PB 97..214 39..152 301 51.7 Plus
CG30152-PA 218 CG30152-PA 97..214 39..152 301 51.7 Plus