Clone Sequence Records
BO18541.3prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO18541.3prime
ATGGTCTAGAAAGCTTGCACCCTTGGCGGCGATGCACTGGTTGATCACCT
CGGCGAGGTGATTGTTCTCCAGGGCGGCGGCCACTCGTTCCTTGTCTGCC
AGCTGCTTGTTCACCGCCAGCTCGGAGGCGTGGGTGCCGGGCGTTATTTC
CACGGTGACCTTAAAGCGAGGTGGCAGCGAGCGGAGCAACTTCACCCGGA
TGGAGAGGCCAATCAAAGTGGCCATCGAGCAATGGGGAATCGTCGGGGTG
AAGCTGATGTGCACGGAATTCTGGCTATCGTTTATCCGGATTAGATCTTC
CTGCACCACATGCAGCTCCTCCAGGGTCAAAGGATGTTCCGGGTCATTAA
TATTTCTGATGAGATCGAAAATCTCTCGTTTGTCAAATGGATCGGGCACG
TTTTCGTCTTCTTCGTTGGCGGTTAATACCCTTTCCTTGATTCTGTCGTA
GACATTGGGGTTGATGTTCTCGATTTCCGTGGGCATGTCGACTGATAACT
BO18541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 471 | CG7949-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..541 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883485 | 366..19 | 1740 | 100 | Minus |
3L | 28110227 | 3L | 10882963..10883083 | 486..366 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:25 has no hits.
BO18541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:24 Download gff for
BO18541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-PA | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:52 Download gff for
BO18541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 12..494 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:55 Download gff for
BO18541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 12..494 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:55 Download gff for
BO18541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10882954..10883083 | 366..494 | 96 | -> | Minus |
3L | 10883139..10883490 | 12..365 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:52 Download gff for
BO18541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876054..10876183 | 366..494 | 96 | -> | Minus |
arm_3L | 10876239..10876590 | 12..365 | 99 | | Minus |
BO18541.5prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO18541.5prime
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTGCAAGCTTTCTAGACC
BO18541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 471 | CG7949-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..541 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883485 | 137..484 | 1740 | 100 | Plus |
3L | 28110227 | 3L | 10882963..10883083 | 17..137 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:31:48 has no hits.
BO18541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:25 Download gff for
BO18541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-PA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:36 Download gff for
BO18541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 9..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:06 Download gff for
BO18541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 9..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:06 Download gff for
BO18541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10882954..10883083 | 9..137 | 96 | -> | Plus |
3L | 10883139..10883490 | 138..491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:36 Download gff for
BO18541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876054..10876183 | 9..137 | 96 | -> | Plus |
arm_3L | 10876239..10876590 | 138..491 | 99 | | Plus |
BO18541.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ634464
> BO18541.complete
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTGCAAGCTTTCTAGACC
AT
BO18541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 471 | CG7949-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..541 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883485 | 137..484 | 1740 | 100 | Plus |
3L | 28110227 | 3L | 10882963..10883083 | 17..137 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:21 has no hits.
BO18541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:47 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:19 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:02 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 74..541 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:47 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:40 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 74..541 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:40 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10882963..10883083 | 17..137 | 100 | -> | Plus |
3L | 10883139..10883485 | 138..486 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:02 Download gff for
BO18541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876063..10876183 | 17..137 | 100 | -> | Plus |
arm_3L | 10876239..10876585 | 138..486 | 99 | | Plus |
BO18541.pep Sequence
Translation from 16 to 502
> BO18541.pep
MPTEIENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPE
HPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKL
LRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQ
CIAAKGASFLDH
BO18541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 156 | CG7949-PA | 1..156 | 1..156 | 799 | 100 | Plus |
CG30152-PD | 152 | CG30152-PD | 31..148 | 39..152 | 301 | 51.7 | Plus |
CG30152-PC | 218 | CG30152-PC | 97..214 | 39..152 | 301 | 51.7 | Plus |
CG30152-PB | 218 | CG30152-PB | 97..214 | 39..152 | 301 | 51.7 | Plus |
CG30152-PA | 218 | CG30152-PA | 97..214 | 39..152 | 301 | 51.7 | Plus |