Clone Sequence Records
BO18542.3prime Sequence
437 bp (437 high quality bases) assembled on 2006-10-13
> BO18542.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGAATCTTCCGGGAGCGGCGGCGGCGC
GAACTGGTGGCGGTGTGGGTATGTGGGCTCCTTCGGCGCGGTATCCGTTC
TCATCAGCAATGTAGGTGATGGTGTAGACCACGCCATCGGGTCCGGTGTA
CGAGTAGGAGCCCTGCATCACCTGAGCCTCGATCTGACTGCCCGGGTTCT
TCAAATAGCCAGCCTCATCCGCTCGGATTCCGTTGCTTGTCTCGTAGTTG
TACTGATAGGAGCCATCGGGATTCAGGTCGAAGTTCTGCTTGAGAATCAC
CGCGTTCGCGTCGAAGGAGTTGCCGCGTGGTGGGGGAAGTCCGCGTTGTG
GCTGCGCCTGAATGAAACTGAGGCAGCAGAGGGCCAAGACGAGGGCTGCG
GCGGAGGCGTGGGTGAGCGACATGTCGACTGATAACT
BO18542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9079-PA | 408 | CG9079-RA | 1..405 | 423..19 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-RA | 829 | CG9079-RA | 45..450 | 424..19 | 2030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11252716..11252892 | 248..424 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 11252130..11252285 | 19..174 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 11252367..11252444 | 170..247 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:41:05 has no hits.
BO18542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:26 Download gff for
BO18542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9079-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:29 Download gff for
BO18542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 15..433 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:25 Download gff for
BO18542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 15..433 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:25 Download gff for
BO18542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11252127..11252282 | 15..171 | 98 | <- | Plus |
| 2R | 11252369..11252444 | 172..247 | 100 | <- | Plus |
| 2R | 11252716..11252896 | 248..430 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:29 Download gff for
BO18542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7139632..7139787 | 15..171 | 98 | <- | Plus |
| arm_2R | 7139874..7139949 | 172..247 | 100 | <- | Plus |
| arm_2R | 7140221..7140401 | 248..430 | 98 | | Plus |
BO18542.5prime Sequence
437 bp (437 high quality bases) assembled on 2006-10-13
> BO18542.5prime
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGGCAAGCTTTCTAGACC
BO18542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9079-PA | 408 | CG9079-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-RA | 829 | CG9079-RA | 45..450 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11252716..11252892 | 192..16 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 11252130..11252285 | 421..266 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11252367..11252444 | 270..193 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:42:27 has no hits.
BO18542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:26 Download gff for
BO18542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9079-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:35 Download gff for
BO18542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 7..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:42 Download gff for
BO18542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 36..453 | 7..425 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:42 Download gff for
BO18542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11252369..11252444 | 193..268 | 100 | <- | Minus |
| 2R | 11252716..11252896 | 10..192 | 98 | | Minus |
| 2R | 11252127..11252282 | 269..425 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:35 Download gff for
BO18542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7139874..7139949 | 193..268 | 100 | <- | Minus |
| arm_2R | 7139632..7139787 | 269..425 | 98 | <- | Minus |
| arm_2R | 7140221..7140401 | 10..192 | 98 | | Minus |
BO18542.complete Sequence
439 bp assembled on 2006-10-11
GenBank Submission: FJ634465
> BO18542.complete
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGGCAAGCTTTCTAGACCAT
BO18542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-RA | 408 | CG9079-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-RA | 829 | CG9079-RA | 45..450 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11252716..11252892 | 192..16 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 11252130..11252285 | 421..266 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11252367..11252444 | 270..193 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:19 has no hits.
BO18542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:48 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:21 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:07 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 46..450 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:48 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:22 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ea-RA | 46..450 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:22 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11252716..11252891 | 17..192 | 100 | | Minus |
| 2R | 11252128..11252282 | 269..423 | 98 | <- | Minus |
| 2R | 11252369..11252444 | 193..268 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:07 Download gff for
BO18542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7140221..7140396 | 17..192 | 100 | | Minus |
| arm_2R | 7139633..7139787 | 269..423 | 98 | <- | Minus |
| arm_2R | 7139874..7139949 | 193..268 | 100 | <- | Minus |
BO18542.pep Sequence
Translation from 16 to 439
> BO18542.pep
MSLTHASAAALVLALCCLSFIQAQPQRGLPPPRGNSFDANAVILKQNFDL
NPDGSYQYNYETSNGIRADEAGYLKNPGSQIEAQVMQGSYSYTGPDGVVY
TITYIADENGYRAEGAHIPTPPPVRAAAAPGRFFKASFLDH
BO18542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ea-PA | 135 | CG9079-PA | 1..135 | 1..135 | 713 | 100 | Plus |
| Cpr49Aa-PB | 144 | CG30045-PB | 6..117 | 11..127 | 299 | 50.4 | Plus |
| Cpr65Az-PA | 239 | CG12330-PA | 91..198 | 29..124 | 264 | 48.1 | Plus |
| Cpr49Ae-PA | 134 | CG8505-PA | 5..117 | 9..127 | 234 | 42.6 | Plus |
| Cpr47Ee-PA | 369 | CG13222-PA | 113..196 | 49..130 | 229 | 53.6 | Plus |
