Clone Sequence Records
BO18544.3prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO18544.3prime
ATGGTCTAGAAAGCTTGCTATTGGTTGGGCAACATCTTTCGGTGCAGCTA
ATCCACATGCAGGCATCTGTATTGCCTGGTAGCCTTGAATTTCTTTGATA
ATCTTATCCTCCTGGCTGTCCAAGGCGACAAAGACCAAAAAGAAATCGTA
GTGCGTTTCGATGTCCCGCGCACTAACCACGACGCACCAATCCATCAGGG
CCTCGGTTATCTTATCTGTAGCCTTGTCCGCACTGGAAACGTCCGGATTC
CAGTGGGAATCCTCTTCATCCTCTGATGTTGGATATATGACATAGGTTCT
GTAGCACTTGTGCCGCTCCATGTCGACTGATAACT
BO18544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12854-PA | 306 | CG12854-RA | 1..303 | 321..19 | 1490 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:32:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769745..14770049 | 19..323 | 1510 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:32:23 has no hits.
BO18544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:28 Download gff for
BO18544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12854-PA | 1..306 | 16..321 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:43 Download gff for
BO18544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 777..1089 | 15..330 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:10 Download gff for
BO18544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 15..330 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:10 Download gff for
BO18544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 15..330 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:43 Download gff for
BO18544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657246..10657558 | 15..330 | 98 | | Plus |
BO18544.5prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO18544.5prime
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATAGCAAGCTTTCTAGACC
BO18544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12854-PA | 306 | CG12854-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:32:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769745..14770049 | 319..15 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:32:35 has no hits.
BO18544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for
BO18544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12854-PA | 1..306 | 17..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:45 Download gff for
BO18544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 777..1089 | 8..323 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:11 Download gff for
BO18544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 8..323 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:11 Download gff for
BO18544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 8..323 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:45 Download gff for
BO18544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657246..10657558 | 8..323 | 98 | | Minus |
BO18544.complete Sequence
337 bp assembled on 2006-10-11
GenBank Submission: FJ634466
> BO18544.complete
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATAGCAAGCTTTCTAGACCAT
BO18544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:23:42 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:23:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769745..14770049 | 319..15 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:23:41 has no hits.
BO18544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:49 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 1..306 | 17..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:22 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 799..1111 | 8..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:08 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 783..1085 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:49 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 799..1111 | 8..323 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:39 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769742..14770047 | 17..321 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:39 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769742..14770047 | 17..321 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:08 Download gff for
BO18544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657247..10657552 | 17..321 | 99 | | Minus |
BO18544.pep Sequence
Translation from 16 to 337
> BO18544.pep
MERHKCYRTYVIYPTSEDEEDSHWNPDVSSADKATDKITEALMDWCVVVS
ARDIETHYDFFLVFVALDSQEDKIIKEIQGYQAIQMPACGLAAPKDVAQP
IASFLDH
Sequence BO18544.pep has no blast hits.