Clone BO18544 Report

Search the DGRC for BO18544

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG42254-RB
Protein status:BO18544.pep: validated full length
Sequenced Size:337

Clone Sequence Records

BO18544.3prime Sequence

335 bp (335 high quality bases) assembled on 2006-10-13

> BO18544.3prime
ATGGTCTAGAAAGCTTGCTATTGGTTGGGCAACATCTTTCGGTGCAGCTA
ATCCACATGCAGGCATCTGTATTGCCTGGTAGCCTTGAATTTCTTTGATA
ATCTTATCCTCCTGGCTGTCCAAGGCGACAAAGACCAAAAAGAAATCGTA
GTGCGTTTCGATGTCCCGCGCACTAACCACGACGCACCAATCCATCAGGG
CCTCGGTTATCTTATCTGTAGCCTTGTCCGCACTGGAAACGTCCGGATTC
CAGTGGGAATCCTCTTCATCCTCTGATGTTGGATATATGACATAGGTTCT
GTAGCACTTGTGCCGCTCCATGTCGACTGATAACT

BO18544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12854-PA 306 CG12854-RA 1..303 321..19 1490 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:32:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769745..14770049 19..323 1510 99.7 Plus
Blast to na_te.dros performed on 2015-02-06 10:32:23 has no hits.

BO18544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:28 Download gff for BO18544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12854-PA 1..306 16..321 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:43 Download gff for BO18544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 777..1089 15..330 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:10 Download gff for BO18544.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 15..330 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:10 Download gff for BO18544.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 15..330 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:43 Download gff for BO18544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657246..10657558 15..330 98   Plus

BO18544.5prime Sequence

335 bp (335 high quality bases) assembled on 2006-10-13

> BO18544.5prime
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATAGCAAGCTTTCTAGACC

BO18544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12854-PA 306 CG12854-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:32:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769745..14770049 319..15 1525 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:32:35 has no hits.

BO18544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for BO18544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12854-PA 1..306 17..322 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:45 Download gff for BO18544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 777..1089 8..323 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:11 Download gff for BO18544.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 8..323 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:11 Download gff for BO18544.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 8..323 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:45 Download gff for BO18544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657246..10657558 8..323 98   Minus

BO18544.complete Sequence

337 bp assembled on 2006-10-11

GenBank Submission: FJ634466

> BO18544.complete
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATAGCAAGCTTTCTAGACCAT

BO18544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:23:42 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:23:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769745..14770049 319..15 1525 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:23:41 has no hits.

BO18544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:49 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 1..306 17..322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:22 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 799..1111 8..323 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:08 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 783..1085 17..321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:49 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 799..1111 8..323 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:39 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14769742..14770047 17..321 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:39 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14769742..14770047 17..321 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:08 Download gff for BO18544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657247..10657552 17..321 99   Minus

BO18544.pep Sequence

Translation from 16 to 337

> BO18544.pep
MERHKCYRTYVIYPTSEDEEDSHWNPDVSSADKATDKITEALMDWCVVVS
ARDIETHYDFFLVFVALDSQEDKIIKEIQGYQAIQMPACGLAAPKDVAQP
IASFLDH
Sequence BO18544.pep has no blast hits.