Clone BO18545 Report

Search the DGRC for BO18545

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG13063-RA
Protein status:BO18545.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO18545.3prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO18545.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGGAGTTGTAGACAACCGGAGAAGCGG
CGGCATAGGAGGTGTGCACCACCGGGGCGGCATAGCTGGTGTGGACAACG
GGAGCGGCAGCATAGGCGGTATGCACCACTGGGGCAGCTGCAGCATAGCT
GACCACCGGAGTGGACTTCACCACCGGGGCCACGATGTCCTCCACTACAT
GCGAGTGGCTGTGCACCACCGACTGGCTCTGGTGGGAGACCGATGTGGGA
ATGCTGCTGACCACAGAACCCACCTTGGCCAGAGAGCGCTCCTGGACAAC
GGTTGTGGCAGCTGGAGCGGCATAAACCAGAGGAGACTCATAAAGATGAC
CGGGACGAGCGACAGCTACGGCGAGGAGAGCAGACAACACCACCAATTTG
AACATGTCGACTGATAACT

BO18545.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 390 CG13063-RA 1..387 405..19 1935 100 Minus
CG13043-PA 447 CG13043-RA 235..323 174..86 245 91 Minus
CG13043-PA 447 CG13043-RA 174..200 235..209 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..434 407..19 1945 100 Minus
CG13043-RA 646 CG13043-RA 80..457 405..37 730 80.4 Minus
CG13044-RA 624 CG13044-RA 66..307 405..161 230 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307095 394..19 1880 100 Minus
3L 28110227 3L 16305469..16305791 86..405 695 81.7 Plus
3L 28110227 3L 16302851..16302978 208..335 205 77.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:51:38 has no hits.

BO18545.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for BO18545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-PA 1..390 15..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:57 Download gff for BO18545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 15..415 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:11 Download gff for BO18545.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 15..415 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:11 Download gff for BO18545.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16306721..16307098 15..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:57 Download gff for BO18545.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299821..16300198 15..393 99   Minus

BO18545.5prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO18545.5prime
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGGCAAGCTTTCTAGACC

BO18545.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 390 CG13063-RA 1..387 17..403 1935 100 Plus
CG13043-PA 447 CG13043-RA 235..323 248..336 245 91 Plus
CG13043-PA 447 CG13043-RA 174..200 187..213 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..434 15..403 1945 100 Plus
CG13043-RA 646 CG13043-RA 80..457 17..385 730 80.4 Plus
CG13044-RA 624 CG13044-RA 66..307 17..261 230 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307095 28..403 1880 100 Plus
3L 28110227 3L 16305469..16305791 336..17 695 81.7 Minus
3L 28110227 3L 16302851..16302978 214..87 205 77.3 Minus
Blast to na_te.dros performed on 2015-02-12 11:18:00 has no hits.

BO18545.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for BO18545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-PA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:09 Download gff for BO18545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 7..407 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:43 Download gff for BO18545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 7..407 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:43 Download gff for BO18545.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16306721..16307098 29..407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:09 Download gff for BO18545.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299821..16300198 29..407 99   Plus

BO18545.complete Sequence

421 bp assembled on 2006-10-11

GenBank Submission: FJ634467

> BO18545.complete
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGGCAAGCTTTCTAGACCAT

BO18545.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 390 CG13063-PA 1..387 17..403 1935 100 Plus
CG13043-RA 447 CG13043-PA 1..323 17..336 695 81.7 Plus
CG13044-RA 468 CG13044-PA 1..198 17..214 210 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..434 15..403 1945 100 Plus
CG13043-RA 646 CG13043-RA 80..402 17..336 695 81.7 Plus
CG13044-RA 624 CG13044-RA 66..263 17..214 210 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307095 28..403 1880 100 Plus
3L 28110227 3L 16305469..16305791 336..17 695 81.7 Minus
3L 28110227 3L 16302851..16302978 214..87 205 77.3 Minus
Blast to na_te.dros performed on 2014-11-27 08:25:14 has no hits.

BO18545.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:50 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:24 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:08 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 53..434 22..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:50 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:16 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 53..434 22..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:16 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16306717..16307095 22..405 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:08 Download gff for BO18545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299817..16300195 22..405 98   Plus

BO18545.pep Sequence

Translation from 16 to 421

> BO18545.pep
MFKLVVLSALLAVAVARPGHLYESPLVYAAPAATTVVQERSLAKVGSVVS
SIPTSVSHQSQSVVHSHSHVVEDIVAPVVKSTPVVSYAAAAPVVHTAYAA
APVVHTSYAAPVVHTSYAAASPVVYNSSWASFLDH

BO18545.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 129 CG13063-PA 1..129 1..129 635 100 Plus
CG13043-PA 148 CG13043-PA 1..130 1..127 530 85.4 Plus
CG13044-PA 155 CG13044-PA 1..146 1..127 340 56.5 Plus
CG13042-PA 117 CG13042-PA 1..102 1..102 243 50 Plus
CG13060-PA 131 CG13060-PA 1..131 1..135 194 44.4 Plus