Clone Sequence Records
BO18545.3prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO18545.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGGAGTTGTAGACAACCGGAGAAGCGG
CGGCATAGGAGGTGTGCACCACCGGGGCGGCATAGCTGGTGTGGACAACG
GGAGCGGCAGCATAGGCGGTATGCACCACTGGGGCAGCTGCAGCATAGCT
GACCACCGGAGTGGACTTCACCACCGGGGCCACGATGTCCTCCACTACAT
GCGAGTGGCTGTGCACCACCGACTGGCTCTGGTGGGAGACCGATGTGGGA
ATGCTGCTGACCACAGAACCCACCTTGGCCAGAGAGCGCTCCTGGACAAC
GGTTGTGGCAGCTGGAGCGGCATAAACCAGAGGAGACTCATAAAGATGAC
CGGGACGAGCGACAGCTACGGCGAGGAGAGCAGACAACACCACCAATTTG
AACATGTCGACTGATAACT
BO18545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 390 | CG13063-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
CG13043-PA | 447 | CG13043-RA | 235..323 | 174..86 | 245 | 91 | Minus |
CG13043-PA | 447 | CG13043-RA | 174..200 | 235..209 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..434 | 407..19 | 1945 | 100 | Minus |
CG13043-RA | 646 | CG13043-RA | 80..457 | 405..37 | 730 | 80.4 | Minus |
CG13044-RA | 624 | CG13044-RA | 66..307 | 405..161 | 230 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307095 | 394..19 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 16305469..16305791 | 86..405 | 695 | 81.7 | Plus |
3L | 28110227 | 3L | 16302851..16302978 | 208..335 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:51:38 has no hits.
BO18545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for
BO18545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:57 Download gff for
BO18545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 15..415 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:11 Download gff for
BO18545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 15..415 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:11 Download gff for
BO18545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306721..16307098 | 15..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:57 Download gff for
BO18545.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299821..16300198 | 15..393 | 99 | | Minus |
BO18545.5prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO18545.5prime
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGGCAAGCTTTCTAGACC
BO18545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 390 | CG13063-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG13043-PA | 447 | CG13043-RA | 235..323 | 248..336 | 245 | 91 | Plus |
CG13043-PA | 447 | CG13043-RA | 174..200 | 187..213 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..434 | 15..403 | 1945 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 80..457 | 17..385 | 730 | 80.4 | Plus |
CG13044-RA | 624 | CG13044-RA | 66..307 | 17..261 | 230 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307095 | 28..403 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 16305469..16305791 | 336..17 | 695 | 81.7 | Minus |
3L | 28110227 | 3L | 16302851..16302978 | 214..87 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:18:00 has no hits.
BO18545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:29 Download gff for
BO18545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:09 Download gff for
BO18545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 7..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:43 Download gff for
BO18545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 7..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:43 Download gff for
BO18545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306721..16307098 | 29..407 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:09 Download gff for
BO18545.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299821..16300198 | 29..407 | 99 | | Plus |
BO18545.complete Sequence
421 bp assembled on 2006-10-11
GenBank Submission: FJ634467
> BO18545.complete
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGGCAAGCTTTCTAGACCAT
BO18545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 390 | CG13063-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 1..323 | 17..336 | 695 | 81.7 | Plus |
CG13044-RA | 468 | CG13044-PA | 1..198 | 17..214 | 210 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..434 | 15..403 | 1945 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 80..402 | 17..336 | 695 | 81.7 | Plus |
CG13044-RA | 624 | CG13044-RA | 66..263 | 17..214 | 210 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307095 | 28..403 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 16305469..16305791 | 336..17 | 695 | 81.7 | Minus |
3L | 28110227 | 3L | 16302851..16302978 | 214..87 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:14 has no hits.
BO18545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:50 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:24 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:08 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 53..434 | 22..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:50 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:16 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 53..434 | 22..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:16 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306717..16307095 | 22..405 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:08 Download gff for
BO18545.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299817..16300195 | 22..405 | 98 | | Plus |
BO18545.pep Sequence
Translation from 16 to 421
> BO18545.pep
MFKLVVLSALLAVAVARPGHLYESPLVYAAPAATTVVQERSLAKVGSVVS
SIPTSVSHQSQSVVHSHSHVVEDIVAPVVKSTPVVSYAAAAPVVHTAYAA
APVVHTSYAAPVVHTSYAAASPVVYNSSWASFLDH
BO18545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 129 | CG13063-PA | 1..129 | 1..129 | 635 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..130 | 1..127 | 530 | 85.4 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..146 | 1..127 | 340 | 56.5 | Plus |
CG13042-PA | 117 | CG13042-PA | 1..102 | 1..102 | 243 | 50 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..131 | 1..135 | 194 | 44.4 | Plus |