Clone Sequence Records
BO18548.5prime Sequence
469 bp (354 high quality bases) assembled on 2006-10-13
> BO18548.5prime
TCGAAGTTATCAGTCGACATGTTTTACGCATTCATAGCACTTGTTTTGGC
CATGCTCCACCTGTCATTCGCAGTACAGGTGCAAACGGAGCACACCATTG
TGGAGGAATGGAGCTGGCAAGACCATCACAGCAACAGAGACTTGGGAAGC
TATAACTACTACACAGCTCTAGATTATGATCAAAATTTCGACGGTGATGA
GAATTCAAACGATAATGAATATGAAGAGGATGATGGCAGGGCTACTGCCG
CCGGCTTGGACCGGGATGAGGATCCGTGCGAGCGCAGCTGTCCCCGGTAC
TACCGGCCTGTCTGCATTCTCCGCAATGGCCGCAATATGACATTTGCCAC
GCTCTGCGAGTTCCACAATCAAGTACGTTGTGCCAACGATCTAAGAAGAC
AAGGTCATGGCTATGTGGTCCCCATCTTTCAATACCAACATGATGGTGGC
TGCGCAAGCTTTCTAGACC
BO18548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-PA | 405 | CG13694-RA | 1..402 | 52..453 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-RB | 818 | CG13694-RB | 33..467 | 19..453 | 2175 | 100 | Plus |
| CG13694-RA | 1124 | CG13694-RA | 339..773 | 19..453 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 115716..116150 | 453..19 | 2175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:00:56 has no hits.
BO18548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:31 Download gff for
BO18548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-PA | 1..405 | 52..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:30:32 Download gff for
BO18548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 335..776 | 11..457 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:27 Download gff for
BO18548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 335..776 | 11..457 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:27 Download gff for
BO18548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 115712..116154 | 11..457 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:30:32 Download gff for
BO18548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 115712..116154 | 11..457 | 98 | | Minus |
BO18548.complete Sequence
469 bp assembled on 2008-08-15
GenBank Submission: FJ634469
> BO18548.complete
GAAGTTATCAGTGGACATGTTTTACGCATTCATAGCACTTGTTTTGGCCA
TGCTCCACCTGTCATTCGCAGTACAGGTGCAAACGGAGCACACCATTGTG
GAGGAATGGAGCTGGCAAGACCATCACAGCAACAGAGACTTGGGAAGCTA
TAACTACTACACAGCTCTAGATTATGATCAAAATTTCGACGGTGATGAGA
ATTCAAACGATAATGAATATGAAGAGGATGATGGCAGGGCTACTGCCGCC
GGCTTGGACCGGGATGAGGATCCGTGCGAGCGCAGCTGTCCCCGGTACTA
CCGGCCTGTCTGCATTCTCCGCAATGGCCGCAATATGACATTTGCCACGC
TCTGCGAGTTCCACAATCAAGTACGTTGTGCCAACGATCTAAGAAGACAA
GGTCATGGCTATGTGGTCCCCATCTTTCAATACCAACATGATGGTGGCTG
CGCAAGCTTTCTAGACCAT
BO18548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-RB | 405 | CG13694-PB | 1..402 | 50..451 | 2010 | 100 | Plus |
| CG13694-RA | 405 | CG13694-PA | 1..402 | 50..451 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-RB | 818 | CG13694-RB | 33..467 | 17..451 | 2175 | 100 | Plus |
| CG13694-RA | 1124 | CG13694-RA | 339..773 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 115716..116150 | 451..17 | 2175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:00:44 has no hits.
BO18548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:49 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 1..405 | 50..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:05 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 346..773 | 24..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:28 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 1..402 | 50..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:39 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13694-RA | 346..773 | 24..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:39 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 115714..116143 | 24..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:05 Download gff for
BO18548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 115714..116143 | 24..453 | 99 | | Minus |
BO18548.pep Sequence
Translation from 16 to 469
> BO18548.pep
MFYAFIALVLAMLHLSFAVQVQTEHTIVEEWSWQDHHSNRDLGSYNYYTA
LDYDQNFDGDENSNDNEYEEDDGRATAAGLDRDEDPCERSCPRYYRPVCI
LRNGRNMTFATLCEFHNQVRCANDLRRQGHGYVVPIFQYQHDGGCASFLD
H
BO18548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13694-PB | 134 | CG13694-PB | 1..134 | 12..145 | 760 | 100 | Plus |
| CG13694-PA | 134 | CG13694-PA | 1..134 | 12..145 | 760 | 100 | Plus |
