Clone Sequence Records
BO18549.3prime Sequence
395 bp (395 high quality bases) assembled on 2006-10-13
> BO18549.3prime
ATGGTCTAGAAAGCTTGCATCTCCATTGCCAACAAACGCATCCTGCAGAA
AATCACCAAATGCATCTTCATCCATGAGTCCCATTTCATCCAGGAGCCAC
TTCTCGTGGTCAATGCCCCGCAATTCACACACGACCTTGAAGATTAATTC
CTCCTTTTGGGTGTAATAATCGGGCGAATCAAATTTGGTTGCCAGCAAAT
CGGCTTCCCGTTTGAATTGTAAGAGCTTGTCATGACGGTTTTGGCCGTCA
TCATTGCGTTCCTCGGCTGACTTAAGGGTGAGCATGGCCAGAAATTCCGA
GAGTTGAGACACATTCGATGGGCTACCACCCAGTAGGTTATCATCGTGGG
CAAACTCGACCGCATATTGTAGACCATCCATGTCGACTGATAACT
BO18549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PA | 366 | CG14072-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..609 | 382..19 | 1820 | 100 | Minus |
CG14072-RB | 778 | CG14072-RB | 289..652 | 382..19 | 1820 | 100 | Minus |
CG14072-RA | 521 | CG14072-RA | 32..395 | 382..19 | 1820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937805 | 310..19 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 10937384..10937456 | 382..310 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:58:45 has no hits.
BO18549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:32 Download gff for
BO18549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-PA | 1..366 | 16..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:50 Download gff for
BO18549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..395 | 19..389 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:34 Download gff for
BO18549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..395 | 19..389 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:34 Download gff for
BO18549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937380..10937456 | 310..389 | 96 | -> | Minus |
2L | 10937515..10937805 | 19..309 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:50 Download gff for
BO18549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937380..10937456 | 310..389 | 96 | -> | Minus |
arm_2L | 10937515..10937805 | 19..309 | 100 | | Minus |
BO18549.5prime Sequence
395 bp (395 high quality bases) assembled on 2006-10-13
> BO18549.5prime
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATGCAAGCTTTCTAGACC
BO18549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PA | 366 | CG14072-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..609 | 16..379 | 1820 | 100 | Plus |
CG14072-RB | 778 | CG14072-RB | 289..652 | 16..379 | 1820 | 100 | Plus |
CG14072-RA | 521 | CG14072-RA | 32..395 | 16..379 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937805 | 88..379 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 10937384..10937456 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:36 has no hits.
BO18549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:32 Download gff for
BO18549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-PA | 1..366 | 17..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:54 Download gff for
BO18549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..395 | 9..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:44 Download gff for
BO18549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..395 | 9..379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:44 Download gff for
BO18549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937380..10937456 | 9..88 | 96 | -> | Plus |
2L | 10937515..10937805 | 89..379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:54 Download gff for
BO18549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937380..10937456 | 9..88 | 96 | -> | Plus |
arm_2L | 10937515..10937805 | 89..379 | 100 | | Plus |
BO18549.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ634470
> BO18549.complete
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATGCAAGCTTTCTAGACCAT
BO18549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 366 | CG14072-PC | 1..363 | 17..379 | 1815 | 100 | Plus |
CG14072-RB | 366 | CG14072-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
CG14072-RA | 366 | CG14072-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..609 | 16..379 | 1820 | 100 | Plus |
CG14072-RB | 778 | CG14072-RB | 289..652 | 16..379 | 1820 | 100 | Plus |
CG14072-RA | 521 | CG14072-RA | 32..395 | 16..379 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937805 | 88..379 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 10937384..10937456 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:47 has no hits.
BO18549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:52 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 1..366 | 17..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:26 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 47..414 | 9..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:26 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 33..395 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:52 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 47..414 | 9..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:47 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 33..395 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:47 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937385..10937456 | 17..88 | 100 | -> | Plus |
2L | 10937515..10937805 | 89..381 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:26 Download gff for
BO18549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937385..10937456 | 17..88 | 100 | -> | Plus |
arm_2L | 10937515..10937805 | 89..381 | 99 | | Plus |
BO18549.pep Sequence
Translation from 16 to 397
> BO18549.pep
MDGLQYAVEFAHDDNLLGGSPSNVSQLSEFLAMLTLKSAEERNDDGQNRH
DKLLQFKREADLLATKFDSPDYYTQKEELIFKVVCELRGIDHEKWLLDEM
GLMDEDAFGDFLQDAFVGNGDASFLDH
BO18549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PC | 121 | CG14072-PC | 1..121 | 1..121 | 634 | 100 | Plus |
CG14072-PB | 121 | CG14072-PB | 1..121 | 1..121 | 634 | 100 | Plus |
CG14072-PA | 121 | CG14072-PA | 1..121 | 1..121 | 634 | 100 | Plus |