Clone BO18549 Report

Search the DGRC for BO18549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG14072-RA
Protein status:BO18549.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO18549.3prime Sequence

395 bp (395 high quality bases) assembled on 2006-10-13

> BO18549.3prime
ATGGTCTAGAAAGCTTGCATCTCCATTGCCAACAAACGCATCCTGCAGAA
AATCACCAAATGCATCTTCATCCATGAGTCCCATTTCATCCAGGAGCCAC
TTCTCGTGGTCAATGCCCCGCAATTCACACACGACCTTGAAGATTAATTC
CTCCTTTTGGGTGTAATAATCGGGCGAATCAAATTTGGTTGCCAGCAAAT
CGGCTTCCCGTTTGAATTGTAAGAGCTTGTCATGACGGTTTTGGCCGTCA
TCATTGCGTTCCTCGGCTGACTTAAGGGTGAGCATGGCCAGAAATTCCGA
GAGTTGAGACACATTCGATGGGCTACCACCCAGTAGGTTATCATCGTGGG
CAAACTCGACCGCATATTGTAGACCATCCATGTCGACTGATAACT

BO18549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PA 366 CG14072-RA 1..363 381..19 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..609 382..19 1820 100 Minus
CG14072-RB 778 CG14072-RB 289..652 382..19 1820 100 Minus
CG14072-RA 521 CG14072-RA 32..395 382..19 1820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937805 310..19 1460 100 Minus
2L 23513712 2L 10937384..10937456 382..310 365 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:58:45 has no hits.

BO18549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:32 Download gff for BO18549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-PA 1..366 16..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:50 Download gff for BO18549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..395 19..389 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:34 Download gff for BO18549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..395 19..389 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:34 Download gff for BO18549.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10937380..10937456 310..389 96 -> Minus
2L 10937515..10937805 19..309 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:50 Download gff for BO18549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937380..10937456 310..389 96 -> Minus
arm_2L 10937515..10937805 19..309 100   Minus

BO18549.5prime Sequence

395 bp (395 high quality bases) assembled on 2006-10-13

> BO18549.5prime
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATGCAAGCTTTCTAGACC

BO18549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PA 366 CG14072-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..609 16..379 1820 100 Plus
CG14072-RB 778 CG14072-RB 289..652 16..379 1820 100 Plus
CG14072-RA 521 CG14072-RA 32..395 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937805 88..379 1460 100 Plus
2L 23513712 2L 10937384..10937456 16..88 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:13:36 has no hits.

BO18549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:32 Download gff for BO18549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-PA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:54 Download gff for BO18549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..395 9..379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:44 Download gff for BO18549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..395 9..379 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:44 Download gff for BO18549.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10937380..10937456 9..88 96 -> Plus
2L 10937515..10937805 89..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:54 Download gff for BO18549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937380..10937456 9..88 96 -> Plus
arm_2L 10937515..10937805 89..379 100   Plus

BO18549.complete Sequence

397 bp assembled on 2006-10-11

GenBank Submission: FJ634470

> BO18549.complete
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATGCAAGCTTTCTAGACCAT

BO18549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 366 CG14072-PC 1..363 17..379 1815 100 Plus
CG14072-RB 366 CG14072-PB 1..363 17..379 1815 100 Plus
CG14072-RA 366 CG14072-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..609 16..379 1820 100 Plus
CG14072-RB 778 CG14072-RB 289..652 16..379 1820 100 Plus
CG14072-RA 521 CG14072-RA 32..395 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937805 88..379 1460 100 Plus
2L 23513712 2L 10937384..10937456 16..88 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:47 has no hits.

BO18549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:52 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 1..366 17..382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:26 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 47..414 9..379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:26 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 33..395 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:52 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 47..414 9..379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:47 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 33..395 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:47 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10937385..10937456 17..88 100 -> Plus
2L 10937515..10937805 89..381 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:26 Download gff for BO18549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937385..10937456 17..88 100 -> Plus
arm_2L 10937515..10937805 89..381 99   Plus

BO18549.pep Sequence

Translation from 16 to 397

> BO18549.pep
MDGLQYAVEFAHDDNLLGGSPSNVSQLSEFLAMLTLKSAEERNDDGQNRH
DKLLQFKREADLLATKFDSPDYYTQKEELIFKVVCELRGIDHEKWLLDEM
GLMDEDAFGDFLQDAFVGNGDASFLDH

BO18549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PC 121 CG14072-PC 1..121 1..121 634 100 Plus
CG14072-PB 121 CG14072-PB 1..121 1..121 634 100 Plus
CG14072-PA 121 CG14072-PA 1..121 1..121 634 100 Plus