Clone BO18553 Report

Search the DGRC for BO18553

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG15199-RA
Protein status:BO18553.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO18553.3prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO18553.3prime
ATGGTCTAGAAAGCTTGCGTATTCGTCGGAGCACTCGAGTTGGGGACAGC
ACTCGGGGAACTTGAAATCATAGTCGTTGGGTGAGAGGTGGCAGCCAGGT
CGCGGCCATGGCTGTTTGTCGCAGTGGCGTATCAACAGCAGATAGTCATC
GGTGCACTCCAAGCGAATGCAGTAGCCCTGCTGACCGGAGGGCAGAACGT
AGCCATTGAGTGGAACGGCCAGGTCCAACTCCTCGTAGAGGCAGTGCTCC
GCCAGGCTAGGGTGCTGCGTGTGACCACGATACTGGGTGCTGAACCCATT
GCCGTCCACCGATGCGGCCAGCAGACAGGCCACAAAAGCTAGGGACATCC
AAGCTGCTCCGGACATGTCGACTGATAACT

BO18553.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-PA 351 CG15199-RA 1..348 366..19 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-RB 522 CG15199-RB 25..373 367..19 1745 100 Minus
CG15199-RA 664 CG15199-RA 167..515 367..19 1745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11140790..11141032 125..367 1215 100 Plus
X 23542271 X 11140623..11140728 19..124 530 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:33:00 has no hits.

BO18553.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:37 Download gff for BO18553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-PA 1..351 18..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:49 Download gff for BO18553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 19..373 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:14 Download gff for BO18553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 19..373 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:14 Download gff for BO18553.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11140623..11140728 19..124 100 <- Plus
X 11140790..11141038 125..373 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:49 Download gff for BO18553.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11034656..11034761 19..124 100 <- Plus
arm_X 11034823..11035071 125..373 98   Plus

BO18553.5prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO18553.5prime
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACGCAAGCTTTCTAGACC

BO18553.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-PA 351 CG15199-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-RB 522 CG15199-RB 25..373 16..364 1745 100 Plus
CG15199-RA 664 CG15199-RA 167..515 16..364 1745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11140790..11141032 258..16 1215 100 Minus
X 23542271 X 11140623..11140728 364..259 530 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:00:11 has no hits.

BO18553.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:37 Download gff for BO18553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-PA 1..351 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:53 Download gff for BO18553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 10..364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:25 Download gff for BO18553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 10..364 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:25 Download gff for BO18553.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11140623..11140728 259..364 100 <- Minus
X 11140790..11141038 10..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:53 Download gff for BO18553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11034656..11034761 259..364 100 <- Minus
arm_X 11034823..11035071 10..258 98   Minus

BO18553.complete Sequence

382 bp assembled on 2006-10-11

GenBank Submission: FJ634472

> BO18553.complete
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACGCAAGCTTTCTAGACCAT

BO18553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-RB 351 CG15199-PB 1..348 17..364 1740 100 Plus
CG15199-RA 351 CG15199-PA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-RB 522 CG15199-RB 25..373 16..364 1745 100 Plus
CG15199-RA 664 CG15199-RA 167..515 16..364 1745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11140790..11141032 258..16 1215 100 Minus
X 23542271 X 11140623..11140728 364..259 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:44:34 has no hits.

BO18553.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:54 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 1..351 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:29 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 10..364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:40 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 168..515 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:54 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 161..515 10..364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:54 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
CG15199-RA 168..515 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:54 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
X 11140790..11141031 17..258 100   Minus
X 11140621..11140728 259..366 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:40 Download gff for BO18553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11034654..11034761 259..366 98 <- Minus
arm_X 11034823..11035064 17..258 100   Minus

BO18553.pep Sequence

Translation from 16 to 382

> BO18553.pep
MSGAAWMSLAFVACLLAASVDGNGFSTQYRGHTQHPSLAEHCLYEELDLA
VPLNGYVLPSGQQGYCIRLECTDDYLLLIRHCDKQPWPRPGCHLSPNDYD
FKFPECCPQLECSDEYASFLDH

BO18553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15199-PB 116 CG15199-PB 1..116 1..116 661 100 Plus
CG15199-PA 116 CG15199-PA 1..116 1..116 661 100 Plus
CG15202-PB 115 CG15202-PB 3..115 10..120 176 35.3 Plus
CG15202-PA 115 CG15202-PA 3..115 10..120 176 35.3 Plus