Clone Sequence Records
BO18553.3prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18553.3prime
ATGGTCTAGAAAGCTTGCGTATTCGTCGGAGCACTCGAGTTGGGGACAGC
ACTCGGGGAACTTGAAATCATAGTCGTTGGGTGAGAGGTGGCAGCCAGGT
CGCGGCCATGGCTGTTTGTCGCAGTGGCGTATCAACAGCAGATAGTCATC
GGTGCACTCCAAGCGAATGCAGTAGCCCTGCTGACCGGAGGGCAGAACGT
AGCCATTGAGTGGAACGGCCAGGTCCAACTCCTCGTAGAGGCAGTGCTCC
GCCAGGCTAGGGTGCTGCGTGTGACCACGATACTGGGTGCTGAACCCATT
GCCGTCCACCGATGCGGCCAGCAGACAGGCCACAAAAGCTAGGGACATCC
AAGCTGCTCCGGACATGTCGACTGATAACT
BO18553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-PA | 351 | CG15199-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-RB | 522 | CG15199-RB | 25..373 | 367..19 | 1745 | 100 | Minus |
CG15199-RA | 664 | CG15199-RA | 167..515 | 367..19 | 1745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140790..11141032 | 125..367 | 1215 | 100 | Plus |
X | 23542271 | X | 11140623..11140728 | 19..124 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:33:00 has no hits.
BO18553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:37 Download gff for
BO18553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:49 Download gff for
BO18553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 19..373 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:14 Download gff for
BO18553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 19..373 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:14 Download gff for
BO18553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11140623..11140728 | 19..124 | 100 | <- | Plus |
X | 11140790..11141038 | 125..373 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:49 Download gff for
BO18553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11034656..11034761 | 19..124 | 100 | <- | Plus |
arm_X | 11034823..11035071 | 125..373 | 98 | | Plus |
BO18553.5prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18553.5prime
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACGCAAGCTTTCTAGACC
BO18553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-PA | 351 | CG15199-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-RB | 522 | CG15199-RB | 25..373 | 16..364 | 1745 | 100 | Plus |
CG15199-RA | 664 | CG15199-RA | 167..515 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140790..11141032 | 258..16 | 1215 | 100 | Minus |
X | 23542271 | X | 11140623..11140728 | 364..259 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:00:11 has no hits.
BO18553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:37 Download gff for
BO18553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:53 Download gff for
BO18553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 10..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:25 Download gff for
BO18553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 10..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:25 Download gff for
BO18553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11140623..11140728 | 259..364 | 100 | <- | Minus |
X | 11140790..11141038 | 10..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:53 Download gff for
BO18553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11034656..11034761 | 259..364 | 100 | <- | Minus |
arm_X | 11034823..11035071 | 10..258 | 98 | | Minus |
BO18553.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ634472
> BO18553.complete
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACGCAAGCTTTCTAGACCAT
BO18553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-RB | 351 | CG15199-PB | 1..348 | 17..364 | 1740 | 100 | Plus |
CG15199-RA | 351 | CG15199-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-RB | 522 | CG15199-RB | 25..373 | 16..364 | 1745 | 100 | Plus |
CG15199-RA | 664 | CG15199-RA | 167..515 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11140790..11141032 | 258..16 | 1215 | 100 | Minus |
X | 23542271 | X | 11140623..11140728 | 364..259 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:34 has no hits.
BO18553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:54 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:29 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 10..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:40 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 168..515 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:54 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 161..515 | 10..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:54 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15199-RA | 168..515 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:54 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11140790..11141031 | 17..258 | 100 | | Minus |
X | 11140621..11140728 | 259..366 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:40 Download gff for
BO18553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11034654..11034761 | 259..366 | 98 | <- | Minus |
arm_X | 11034823..11035064 | 17..258 | 100 | | Minus |
BO18553.pep Sequence
Translation from 16 to 382
> BO18553.pep
MSGAAWMSLAFVACLLAASVDGNGFSTQYRGHTQHPSLAEHCLYEELDLA
VPLNGYVLPSGQQGYCIRLECTDDYLLLIRHCDKQPWPRPGCHLSPNDYD
FKFPECCPQLECSDEYASFLDH
BO18553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15199-PB | 116 | CG15199-PB | 1..116 | 1..116 | 661 | 100 | Plus |
CG15199-PA | 116 | CG15199-PA | 1..116 | 1..116 | 661 | 100 | Plus |
CG15202-PB | 115 | CG15202-PB | 3..115 | 10..120 | 176 | 35.3 | Plus |
CG15202-PA | 115 | CG15202-PA | 3..115 | 10..120 | 176 | 35.3 | Plus |