Clone Sequence Records
BO18560.3prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18560.3prime
ATGGTCTAGAAAGCTTGCTTTTAAGACTAAGGCAACTGGTTCAGATTTTC
TAAGGCTAATAGCATCGTTTAGGGACTTTGTATTGACATTTCCTCCTGAA
ATTTGCAGAAGCTTTAGATTTTTGCATTTTGCAATGATTGGCAGAAGATT
ATTGGAAATATCCGTTGGGCAGAATATCGAGACGCATAGCTCCTCCAGAT
TGGCCAGACAACCCAGCATCTCCACACAGTCAGTCGTTGAGTAGAAGCCC
TTGAAATGCCGTAAGCTCTGGATGCGAACCAACTGGCAGGTCTCCTGCAT
AGTAAGACTCCCTCCGTCGATGGACAGATGTGTCAACTGAGATTTGGCAG
CTAGAGCTGAGAGAAGTGGTTCAAAGGAGCCGCTTCTGCGAATGCCAAAG
TAGGATAGTTCCCCCAGCTTCGGCAGCCTAGCCAGCTGCACGTATTCTGA
AGAATTCGCGGGCATGCCAAACTTGAGCACCTTCAAGTTCTTGCAATGCG
GCACTATGTGGCTCAAATTCTTCTGTATGCAGGCATAGCCCAAATGAAGA
CTGCGAAGATTGCCACTGGACCTGCAACATTTCACCAGAGCTGCGAGTGA
AATTTTTGGGACGAGCATGTCGACTGATAACT
BO18560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PA | 603 | CG12520-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1276 | 618..19 | 3000 | 100 | Minus |
CG12520-RC | 1427 | CG12520-RC | 697..1296 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901378..12901977 | 19..618 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:01 has no hits.
BO18560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:43 Download gff for
BO18560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:09 Download gff for
BO18560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 11..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:01 Download gff for
BO18560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 11..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:01 Download gff for
BO18560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901372..12901977 | 11..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:09 Download gff for
BO18560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894472..12895077 | 11..618 | 99 | | Plus |
BO18560.5prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18560.5prime
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAAGCAAGCTTTCTAGACC
BO18560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PA | 603 | CG12520-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1276 | 17..616 | 3000 | 100 | Plus |
CG12520-RC | 1427 | CG12520-RC | 697..1296 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901378..12901977 | 616..17 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:18:16 has no hits.
BO18560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:43 Download gff for
BO18560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:13 Download gff for
BO18560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:23 Download gff for
BO18560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:23 Download gff for
BO18560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901372..12901977 | 17..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:13 Download gff for
BO18560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894472..12895077 | 17..624 | 99 | | Minus |
BO18560.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ634473
> BO18560.complete
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAAGCAAGCTTTCTAGACCAT
BO18560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1116 | CG12520-PB | 514..1113 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1276 | 17..616 | 3000 | 100 | Plus |
CG12520-RC | 1427 | CG12520-RC | 697..1296 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901378..12901977 | 616..17 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:22 has no hits.
BO18560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:11 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:28 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:18 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1292 | 17..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:11 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:01 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1292 | 17..612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:01 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901382..12901977 | 17..612 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:18 Download gff for
BO18560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894482..12895077 | 17..612 | 100 | | Minus |
BO18560.pep Sequence
Translation from 16 to 634
> BO18560.pep
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
ASFLDH
BO18560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PB | 371 | CG12520-PB | 172..371 | 1..200 | 1021 | 100 | Plus |