Clone BO18560 Report

Search the DGRC for BO18560

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:60
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18560.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO18560.3prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18560.3prime
ATGGTCTAGAAAGCTTGCTTTTAAGACTAAGGCAACTGGTTCAGATTTTC
TAAGGCTAATAGCATCGTTTAGGGACTTTGTATTGACATTTCCTCCTGAA
ATTTGCAGAAGCTTTAGATTTTTGCATTTTGCAATGATTGGCAGAAGATT
ATTGGAAATATCCGTTGGGCAGAATATCGAGACGCATAGCTCCTCCAGAT
TGGCCAGACAACCCAGCATCTCCACACAGTCAGTCGTTGAGTAGAAGCCC
TTGAAATGCCGTAAGCTCTGGATGCGAACCAACTGGCAGGTCTCCTGCAT
AGTAAGACTCCCTCCGTCGATGGACAGATGTGTCAACTGAGATTTGGCAG
CTAGAGCTGAGAGAAGTGGTTCAAAGGAGCCGCTTCTGCGAATGCCAAAG
TAGGATAGTTCCCCCAGCTTCGGCAGCCTAGCCAGCTGCACGTATTCTGA
AGAATTCGCGGGCATGCCAAACTTGAGCACCTTCAAGTTCTTGCAATGCG
GCACTATGTGGCTCAAATTCTTCTGTATGCAGGCATAGCCCAAATGAAGA
CTGCGAAGATTGCCACTGGACCTGCAACATTTCACCAGAGCTGCGAGTGA
AATTTTTGGGACGAGCATGTCGACTGATAACT

BO18560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PA 603 CG12520-RA 1..600 618..19 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1276 618..19 3000 100 Minus
CG12520-RC 1427 CG12520-RC 697..1296 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901378..12901977 19..618 3000 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:15:01 has no hits.

BO18560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:43 Download gff for BO18560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-PA 1..603 18..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:09 Download gff for BO18560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 11..618 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:01 Download gff for BO18560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 11..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:01 Download gff for BO18560.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12901372..12901977 11..618 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:09 Download gff for BO18560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894472..12895077 11..618 99   Plus

BO18560.5prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18560.5prime
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAAGCAAGCTTTCTAGACC

BO18560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PA 603 CG12520-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1276 17..616 3000 100 Plus
CG12520-RC 1427 CG12520-RC 697..1296 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901378..12901977 616..17 3000 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:18:16 has no hits.

BO18560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:43 Download gff for BO18560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-PA 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:13 Download gff for BO18560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 17..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:23 Download gff for BO18560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 17..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:23 Download gff for BO18560.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12901372..12901977 17..624 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:13 Download gff for BO18560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894472..12895077 17..624 99   Minus

BO18560.complete Sequence

634 bp assembled on 2006-10-11

GenBank Submission: FJ634473

> BO18560.complete
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAAGCAAGCTTTCTAGACCAT

BO18560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1116 CG12520-PB 514..1113 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1276 17..616 3000 100 Plus
CG12520-RC 1427 CG12520-RC 697..1296 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901378..12901977 616..17 3000 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:05:22 has no hits.

BO18560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:11 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:28 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:18 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1292 17..612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:11 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:01 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1292 17..612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:01 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12901382..12901977 17..612 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:18 Download gff for BO18560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894482..12895077 17..612 100   Minus

BO18560.pep Sequence

Translation from 16 to 634

> BO18560.pep
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
ASFLDH

BO18560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PB 371 CG12520-PB 172..371 1..200 1021 100 Plus