Clone Sequence Records
BO18564.3prime Sequence
638 bp (638 high quality bases) assembled on 2006-10-13
> BO18564.3prime
ATGGTCTAGAAAGCTTGCATTTTCATTTCCATTTGAAGGTTCGAATTCAT
GTTCCGAGACGAGGTATGTTGGTGTCCATCGCCATAACCATTCCACCAGA
TAGAAATTGGCAGCCATCGGATTGCCAAGCGCATACTTCCTTGCAAAATT
ATGGCAATTGAAGGTGCCACGACCCTTTTCCTCGCCCTCGGGAACGAAAG
TCTCGTCGAAATCGAGCTCCAGATACTGCTTGAAGGCCAGGAAGACGATT
CGATGGATGTTACTGCCGTGGATGGTCCGCCGGTTGTCGTAGGCCACAAG
CGTCTGACCCATGGCGACATCGCAGCCCGGAATATTACCGACCATCCAAA
TGAGCCACTCCGTATTATTGTCCGGCGGCACGTCCAAGTCGACCATCATC
AGCGTGTGATAGTGTTCCGGATCGGCCTTAAACCGAATGATCGGTTGCTT
CAGCGTCTCATTAATCACTACCATAATGCCCGGTTTGATGTCGATATCGC
AGGGATATAGCACACTGATCACCTTCGTTGGCTTGCAGGCAAAGAGGCGG
GGTATCACGTGGTGCCTCTTGAGTTCCGTGACCAGTTTCTCAACTGGACA
AAGGATCGGGCAGCTCACCAGCATGTCGACTGATAACT
BO18564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 609 | CG30060-RA | 1..606 | 624..19 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..650 | 625..19 | 3035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422998..13423604 | 19..625 | 3035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:40:32 has no hits.
BO18564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:45 Download gff for
BO18564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-PA | 1..609 | 15..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:07 Download gff for
BO18564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 15..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:21 Download gff for
BO18564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 15..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:21 Download gff for
BO18564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422995..13423607 | 15..632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:07 Download gff for
BO18564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310500..9311112 | 15..632 | 99 | | Plus |
BO18564.5prime Sequence
638 bp (638 high quality bases) assembled on 2006-10-13
> BO18564.5prime
GAAGTTATCAGTCGACATGCTGGTGAGCTGCCCGATCCTTTGTCCAGTTG
AGAAACTGGTCACGGAACTCAAGAGGCACCACGTGATACCCCGCCTCTTT
GCCTGCAAGCCAACGAAGGTGATCAGTGTGCTATATCCCTGCGATATCGA
CATCAAACCGGGCATTATGGTAGTGATTAATGAGACGCTGAAGCAACCGA
TCATTCGGTTTAAGGCCGATCCGGAACACTATCACACGCTGATGATGGTC
GACTTGGACGTGCCGCCGGACAATAATACGGAGTGGCTCATTTGGATGGT
CGGTAATATTCCGGGCTGCGATGTCGCCATGGGTCAGACGCTTGTGGCCT
ACGACAACCGGCGGACCATCCACGGCAGTAACATCCATCGAATCGTCTTC
CTGGCCTTCAAGCAGTATCTGGAGCTCGATTTCGACGAGACTTTCGTTCC
CGAGGGCGAGGAAAAGGGTCGTGGCACCTTCAATTGCCATAATTTTGCAA
GGAAGTATGCGCTTGGCAATCCGATGGCTGCCAATTTCTATCTGGTGGAA
TGGTTATGGCGATGGACACCAACATACCTCGTCTCGGAACATGAATTCGA
ACCTTCAAATGGAAATGAAAATGCAAGCTTTCTAGACC
BO18564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 609 | CG30060-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..650 | 16..622 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422998..13423604 | 622..16 | 3035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:44:09 has no hits.
BO18564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:45 Download gff for
BO18564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-PA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:44 Download gff for
BO18564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:17 Download gff for
BO18564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 9..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:17 Download gff for
BO18564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422995..13423607 | 9..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:44 Download gff for
BO18564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310500..9311112 | 9..626 | 99 | | Minus |
BO18564.complete Sequence
640 bp assembled on 2006-10-11
GenBank Submission: FJ634474
> BO18564.complete
GAAGTTATCAGTCGACATGCTGGTGAGCTGCCCGATCCTTTGTCCAGTTG
AGAAACTGGTCACGGAACTCAAGAGGCACCACGTGATACCCCGCCTCTTT
GCCTGCAAGCCAACGAAGGTGATCAGTGTGCTATATCCCTGCGATATCGA
CATCAAACCGGGCATTATGGTAGTGATTAATGAGACGCTGAAGCAACCGA
TCATTCGGTTTAAGGCCGATCCGGAACACTATCACACGCTGATGATGGTC
GACTTGGACGTGCCGCCGGACAATAATACGGAGTGGCTCATTTGGATGGT
CGGTAATATTCCGGGCTGCGATGTCGCCATGGGTCAGACGCTTGTGGCCT
ACGACAACCGGCGGACCATCCACGGCAGTAACATCCATCGAATCGTCTTC
CTGGCCTTCAAGCAGTATCTGGAGCTCGATTTCGACGAGACTTTCGTTCC
CGAGGGCGAGGAAAAGGGTCGTGGCACCTTCAATTGCCATAATTTTGCAA
GGAAGTATGCGCTTGGCAATCCGATGGCTGCCAATTTCTATCTGGTGGAA
TGGTTATGGCGATGGACACCAACATACCTCGTCTCGGAACATGAATTCGA
ACCTTCAAATGGAAATGAAAATGCAAGCTTTCTAGACCAT
BO18564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 609 | CG30060-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..650 | 16..622 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422998..13423604 | 622..16 | 3035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:56:49 has no hits.
BO18564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:30 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:10 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:48 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 45..650 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:30 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:13 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 45..650 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:13 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422996..13423603 | 17..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:48 Download gff for
BO18564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310501..9311108 | 17..624 | 99 | | Minus |
BO18564.pep Sequence
Translation from 16 to 640
> BO18564.pep
MLVSCPILCPVEKLVTELKRHHVIPRLFACKPTKVISVLYPCDIDIKPGI
MVVINETLKQPIIRFKADPEHYHTLMMVDLDVPPDNNTEWLIWMVGNIPG
CDVAMGQTLVAYDNRRTIHGSNIHRIVFLAFKQYLELDFDETFVPEGEEK
GRGTFNCHNFARKYALGNPMAANFYLVEWLWRWTPTYLVSEHEFEPSNGN
ENASFLDH
BO18564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 202 | CG30060-PA | 1..202 | 1..202 | 1112 | 100 | Plus |
| CG6180-PA | 257 | CG6180-PA | 74..244 | 12..179 | 325 | 39.8 | Plus |
| CG17919-PA | 202 | CG17919-PA | 8..188 | 2..179 | 256 | 30.4 | Plus |
| CG17917-PA | 211 | CG17917-PA | 31..190 | 23..179 | 252 | 35 | Plus |
| CG10298-PA | 187 | CG10298-PA | 10..172 | 20..179 | 245 | 31.9 | Plus |
