Clone BO18568 Report

Search the DGRC for BO18568

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG4438-RA
Protein status:BO18568.pep: validated full length
Sequenced Size:601

Clone Sequence Records

BO18568.3prime Sequence

599 bp (599 high quality bases) assembled on 2006-10-13

> BO18568.3prime
ATGGTCTAGAAAGCTTGCCTTGGCAAACGGCTTCTTGGTGACCACATTGG
CTGCTTTCTTCTCCGCTTCACGCCTAGCAGCGGTTTCTTCGCGCTGCTTC
CGGATCAGAGCCAGCCTGGCCAAGTCGGCCCTAGCCTCGGTGGTTTTCCC
AGCTACATGGAGTTTCTCGTAACGCTTGCGAGCACTCTGATCTTGATCGC
GGCGGGATAGCCCCGCCTTGGTCTGATCAAGCATAATGGCTGAAATCTTT
TGTGGCCCCTTCTTGGACACCCGGTTGGGATTATCGATTTCAATGAGTGA
AGCCACGCCCTTTCTGGCAACACGAGATTCCGTTTCGCAATCCTCGGAAG
AACTGTCCACCTCATCTGACGACGATTTCTGATTGCGAGTCGCTTTTTTC
AAGGTGCGATCCTTTGCTATGGAGGAGGATGAATTGGCTCCTCCCCTGGT
TGCTACTTTCTCATCGCTATCTGAACCAGAGCCGCTGACTTGGTCGTAAT
CGTCCTCTGACTCCTGCCGCAGTTCCTCGGGGGATGTGAACTGGCGAGTG
CGACCCTTGTAGCTAAGGAACTTTCCTCGTGGCATGTCGACTGATAACT

BO18568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PA 570 CG4438-RA 1..567 585..19 2835 100 Minus
CG11444-PA 648 CG11444-RA 488..575 176..89 190 88.6 Minus
CG11444-PA 648 CG11444-RA 316..370 312..258 175 92.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..741 586..19 2840 100 Minus
CG4438-RA 819 CG4438-RA 182..749 586..19 2840 100 Minus
CG11444-RB 1282 CG11444-RB 891..1061 189..19 420 83 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397180..9397747 19..586 2840 100 Plus
X 23542271 X 4553338..4553508 19..189 420 83 Plus
X 23542271 X 4553853..4553983 456..586 325 83.2 Plus
X 23542271 X 4553591..4553692 236..337 255 83.3 Plus
Blast to na_te.dros performed on 2015-02-11 17:40:42 has no hits.

BO18568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:49 Download gff for BO18568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:11 Download gff for BO18568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..749 19..595 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:33 Download gff for BO18568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..749 19..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:33 Download gff for BO18568.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9397180..9397752 19..595 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:11 Download gff for BO18568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397180..9397752 19..595 99   Plus

BO18568.5prime Sequence

599 bp (599 high quality bases) assembled on 2006-10-13

> BO18568.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGGCAAGCTTTCTAGACC

BO18568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PA 570 CG4438-RA 1..567 17..583 2835 100 Plus
CG11444-PA 648 CG11444-RA 488..575 426..513 190 88.6 Plus
CG11444-PA 648 CG11444-RA 316..370 290..344 175 92.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..741 16..583 2840 100 Plus
CG4438-RA 819 CG4438-RA 182..749 16..583 2840 100 Plus
CG11444-RB 1282 CG11444-RB 891..1061 413..583 420 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397180..9397747 583..16 2840 100 Minus
X 23542271 X 4553338..4553508 583..413 420 83 Minus
X 23542271 X 4553853..4553983 146..16 325 83.2 Minus
X 23542271 X 4553591..4553692 366..265 255 83.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:41:02 has no hits.

BO18568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:49 Download gff for BO18568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:16 Download gff for BO18568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..749 7..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:09 Download gff for BO18568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..749 7..583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:09 Download gff for BO18568.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9397180..9397752 7..583 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:16 Download gff for BO18568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397180..9397752 7..583 99   Minus

BO18568.complete Sequence

601 bp assembled on 2006-10-11

GenBank Submission: FJ634476

> BO18568.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGGCAAGCTTTCTAGACCA
T

BO18568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 570 CG4438-PB 1..567 17..583 2835 100 Plus
CG4438-RA 570 CG4438-PA 1..567 17..583 2835 100 Plus
CG11444-RB 648 CG11444-PB 475..645 413..583 420 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..741 16..583 2840 100 Plus
CG4438-RA 819 CG4438-RA 182..749 16..583 2840 100 Plus
CG11444-RB 1282 CG11444-RB 891..1061 413..583 420 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397180..9397747 583..16 2840 100 Minus
X 23542271 X 4553338..4553508 583..413 420 83 Minus
X 23542271 X 4553853..4553983 146..16 325 83.2 Minus
X 23542271 X 4553591..4553692 366..265 255 83.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:15 has no hits.

BO18568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:27 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:36 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..749 7..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:13 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 183..749 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:28 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 13..588 7..584 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:07 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 183..749 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:07 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9397178..9397746 17..585 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:13 Download gff for BO18568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397178..9397746 17..585 99   Minus

BO18568.pep Sequence

Translation from 16 to 601

> BO18568.pep
MPRGKFLSYKGRTRQFTSPEELRQESEDDYDQVSGSGSDSDEKVATRGGA
NSSSSIAKDRTLKKATRNQKSSSDEVDSSSEDCETESRVARKGVASLIEI
DNPNRVSKKGPQKISAIMLDQTKAGLSRRDQDQSARKRYEKLHVAGKTTE
ARADLARLALIRKQREETAARREAEKKAANVVTKKPFAKASFLDH

BO18568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PB 189 CG4438-PB 1..189 1..189 932 100 Plus
CG4438-PA 189 CG4438-PA 1..189 1..189 932 100 Plus
CG11444-PB 215 CG11444-PB 1..215 1..189 573 62.3 Plus
CG11444-PA 215 CG11444-PA 1..215 1..189 573 62.3 Plus