Clone Sequence Records
BO18568.3prime Sequence
599 bp (599 high quality bases) assembled on 2006-10-13
> BO18568.3prime
ATGGTCTAGAAAGCTTGCCTTGGCAAACGGCTTCTTGGTGACCACATTGG
CTGCTTTCTTCTCCGCTTCACGCCTAGCAGCGGTTTCTTCGCGCTGCTTC
CGGATCAGAGCCAGCCTGGCCAAGTCGGCCCTAGCCTCGGTGGTTTTCCC
AGCTACATGGAGTTTCTCGTAACGCTTGCGAGCACTCTGATCTTGATCGC
GGCGGGATAGCCCCGCCTTGGTCTGATCAAGCATAATGGCTGAAATCTTT
TGTGGCCCCTTCTTGGACACCCGGTTGGGATTATCGATTTCAATGAGTGA
AGCCACGCCCTTTCTGGCAACACGAGATTCCGTTTCGCAATCCTCGGAAG
AACTGTCCACCTCATCTGACGACGATTTCTGATTGCGAGTCGCTTTTTTC
AAGGTGCGATCCTTTGCTATGGAGGAGGATGAATTGGCTCCTCCCCTGGT
TGCTACTTTCTCATCGCTATCTGAACCAGAGCCGCTGACTTGGTCGTAAT
CGTCCTCTGACTCCTGCCGCAGTTCCTCGGGGGATGTGAACTGGCGAGTG
CGACCCTTGTAGCTAAGGAACTTTCCTCGTGGCATGTCGACTGATAACT
BO18568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PA | 570 | CG4438-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
CG11444-PA | 648 | CG11444-RA | 488..575 | 176..89 | 190 | 88.6 | Minus |
CG11444-PA | 648 | CG11444-RA | 316..370 | 312..258 | 175 | 92.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..741 | 586..19 | 2840 | 100 | Minus |
CG4438-RA | 819 | CG4438-RA | 182..749 | 586..19 | 2840 | 100 | Minus |
CG11444-RB | 1282 | CG11444-RB | 891..1061 | 189..19 | 420 | 83 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397180..9397747 | 19..586 | 2840 | 100 | Plus |
X | 23542271 | X | 4553338..4553508 | 19..189 | 420 | 83 | Plus |
X | 23542271 | X | 4553853..4553983 | 456..586 | 325 | 83.2 | Plus |
X | 23542271 | X | 4553591..4553692 | 236..337 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:40:42 has no hits.
BO18568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:49 Download gff for
BO18568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:11 Download gff for
BO18568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..749 | 19..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:33 Download gff for
BO18568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..749 | 19..595 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:33 Download gff for
BO18568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397180..9397752 | 19..595 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:11 Download gff for
BO18568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397180..9397752 | 19..595 | 99 | | Plus |
BO18568.5prime Sequence
599 bp (599 high quality bases) assembled on 2006-10-13
> BO18568.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGGCAAGCTTTCTAGACC
BO18568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PA | 570 | CG4438-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
CG11444-PA | 648 | CG11444-RA | 488..575 | 426..513 | 190 | 88.6 | Plus |
CG11444-PA | 648 | CG11444-RA | 316..370 | 290..344 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..741 | 16..583 | 2840 | 100 | Plus |
CG4438-RA | 819 | CG4438-RA | 182..749 | 16..583 | 2840 | 100 | Plus |
CG11444-RB | 1282 | CG11444-RB | 891..1061 | 413..583 | 420 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397180..9397747 | 583..16 | 2840 | 100 | Minus |
X | 23542271 | X | 4553338..4553508 | 583..413 | 420 | 83 | Minus |
X | 23542271 | X | 4553853..4553983 | 146..16 | 325 | 83.2 | Minus |
X | 23542271 | X | 4553591..4553692 | 366..265 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:41:02 has no hits.
BO18568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:49 Download gff for
BO18568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:16 Download gff for
BO18568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..749 | 7..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:09 Download gff for
BO18568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..749 | 7..583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:09 Download gff for
BO18568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397180..9397752 | 7..583 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:16 Download gff for
BO18568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397180..9397752 | 7..583 | 99 | | Minus |
BO18568.complete Sequence
601 bp assembled on 2006-10-11
GenBank Submission: FJ634476
> BO18568.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGGCAAGCTTTCTAGACCA
T
BO18568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 570 | CG4438-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
CG4438-RA | 570 | CG4438-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
CG11444-RB | 648 | CG11444-PB | 475..645 | 413..583 | 420 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..741 | 16..583 | 2840 | 100 | Plus |
CG4438-RA | 819 | CG4438-RA | 182..749 | 16..583 | 2840 | 100 | Plus |
CG11444-RB | 1282 | CG11444-RB | 891..1061 | 413..583 | 420 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397180..9397747 | 583..16 | 2840 | 100 | Minus |
X | 23542271 | X | 4553338..4553508 | 583..413 | 420 | 83 | Minus |
X | 23542271 | X | 4553853..4553983 | 146..16 | 325 | 83.2 | Minus |
X | 23542271 | X | 4553591..4553692 | 366..265 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:15 has no hits.
BO18568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:27 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:36 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..749 | 7..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:13 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 183..749 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:28 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 13..588 | 7..584 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:07 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 183..749 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:07 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397178..9397746 | 17..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:13 Download gff for
BO18568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397178..9397746 | 17..585 | 99 | | Minus |
BO18568.pep Sequence
Translation from 16 to 601
> BO18568.pep
MPRGKFLSYKGRTRQFTSPEELRQESEDDYDQVSGSGSDSDEKVATRGGA
NSSSSIAKDRTLKKATRNQKSSSDEVDSSSEDCETESRVARKGVASLIEI
DNPNRVSKKGPQKISAIMLDQTKAGLSRRDQDQSARKRYEKLHVAGKTTE
ARADLARLALIRKQREETAARREAEKKAANVVTKKPFAKASFLDH
BO18568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PB | 189 | CG4438-PB | 1..189 | 1..189 | 932 | 100 | Plus |
CG4438-PA | 189 | CG4438-PA | 1..189 | 1..189 | 932 | 100 | Plus |
CG11444-PB | 215 | CG11444-PB | 1..215 | 1..189 | 573 | 62.3 | Plus |
CG11444-PA | 215 | CG11444-PA | 1..215 | 1..189 | 573 | 62.3 | Plus |