Clone Sequence Records
BO18574.3prime Sequence
590 bp (590 high quality bases) assembled on 2006-10-13
> BO18574.3prime
ATGGTCTAGAAAGCTTGCTTTCGCAGGATGCATGCCGCTGCCCATATACT
TGTCGAACAGGAATTCGCCCACCTGGTTTTGTGCCTTCTCCAATTGGCTA
ATATAGTCGGCCAGAATCTTCTGGCCATCCACTTGCTCCTGCAGGAAATT
GGCCTCGATGAAATCGCAGAGATTCGGATCCGCTTCCTTGCCAGCCAGGG
CGTGCAAATCGAGCAGATGCTTATTGACCTCCAGTTCCATTTTCATTGCG
TGCTTTAGTGCATCCAAGGTGCTGGCGAAACAGGGCAACGGCTGTGGTAC
ACTGCTCAAAATGATTAGACCACCACGCTTGTTCATGTACGTCATGATCT
TCTCCGCGTGCTCCCGCTCCTCGACGCTCGCCTTTAGGAAGAATCGATGC
ATTCCGGGTGAACTGATATCGGAGCGATCGAAATGGTAGGCCATGGCCAG
ATACTGGTGGGATGCCTTCAACTCCATGTTGATCTGATCGTTTAGCTTCT
TCTCGCAACTTTTGGCGAAGTTCTGACGCACCAGCATGCACATGTGGCGC
CGAATGTCGCGGAAGCACCACGCCATGTCGACTGATAACT
BO18574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4349-PA | 561 | CG4349-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..656 | 579..19 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107477..13107900 | 19..442 | 2120 | 100 | Plus |
| X | 23542271 | X | 13107961..13108099 | 441..579 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:03 has no hits.
BO18574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:54 Download gff for
BO18574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4349-PA | 1..561 | 16..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:07 Download gff for
BO18574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 15..584 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:30 Download gff for
BO18574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 15..584 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:30 Download gff for
BO18574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107473..13107899 | 15..441 | 99 | <- | Plus |
| X | 13107962..13108104 | 442..584 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:07 Download gff for
BO18574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001506..13001932 | 15..441 | 99 | <- | Plus |
| arm_X | 13001995..13002137 | 442..584 | 97 | | Plus |
BO18574.5prime Sequence
590 bp (590 high quality bases) assembled on 2006-10-13
> BO18574.5prime
GAAGTTATCAGTCGACATGGCGTGGTGCTTCCGCGACATTCGGCGCCACA
TGTGCATGCTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTA
AACGATCAGATCAACATGGAGTTGAAGGCATCCCACCAGTATCTGGCCAT
GGCCTACCATTTCGATCGCTCCGATATCAGTTCACCCGGAATGCATCGAT
TCTTCCTAAAGGCGAGCGTCGAGGAGCGGGAGCACGCGGAGAAGATCATG
ACGTACATGAACAAGCGTGGTGGTCTAATCATTTTGAGCAGTGTACCACA
GCCGTTGCCCTGTTTCGCCAGCACCTTGGATGCACTAAAGCACGCAATGA
AAATGGAACTGGAGGTCAATAAGCATCTGCTCGATTTGCACGCCCTGGCT
GGCAAGGAAGCGGATCCGAATCTCTGCGATTTCATCGAGGCCAATTTCCT
GCAGGAGCAAGTGGATGGCCAGAAGATTCTGGCCGACTATATTAGCCAAT
TGGAGAAGGCACAAAACCAGGTGGGCGAATTCCTGTTCGACAAGTATATG
GGCAGCGGCATGCATCCTGCGAAAGCAAGCTTTCTAGACC
BO18574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4349-PA | 561 | CG4349-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..656 | 14..574 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107477..13107900 | 574..151 | 2120 | 100 | Minus |
| X | 23542271 | X | 13107961..13108099 | 152..14 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:23 has no hits.
BO18574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:55 Download gff for
BO18574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4349-PA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:51 Download gff for
BO18574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 9..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:32 Download gff for
BO18574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 9..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:32 Download gff for
BO18574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107962..13108104 | 9..151 | 97 | | Minus |
| X | 13107473..13107899 | 152..578 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:51 Download gff for
BO18574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001506..13001932 | 152..578 | 99 | <- | Minus |
| arm_X | 13001995..13002137 | 9..151 | 97 | | Minus |
BO18574.complete Sequence
592 bp assembled on 2006-10-11
GenBank Submission: FJ634478
> BO18574.complete
GAAGTTATCAGTCGACATGGCGTGGTGCTTCCGCGACATTCGGCGCCACA
TGTGCATGCTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTA
AACGATCAGATCAACATGGAGTTGAAGGCATCCCACCAGTATCTGGCCAT
GGCCTACCATTTCGATCGCTCCGATATCAGTTCACCCGGAATGCATCGAT
TCTTCCTAAAGGCGAGCGTCGAGGAGCGGGAGCACGCGGAGAAGATCATG
ACGTACATGAACAAGCGTGGTGGTCTAATCATTTTGAGCAGTGTACCACA
GCCGTTGCCCTGTTTCGCCAGCACCTTGGATGCACTAAAGCACGCAATGA
AAATGGAACTGGAGGTCAATAAGCATCTGCTCGATTTGCACGCCCTGGCT
GGCAAGGAAGCGGATCCGAATCTCTGCGATTTCATCGAGGCCAATTTCCT
GCAGGAGCAAGTGGATGGCCAGAAGATTCTGGCCGACTATATTAGCCAAT
TGGAGAAGGCACAAAACCAGGTGGGCGAATTCCTGTTCGACAAGTATATG
GGCAGCGGCATGCATCCTGCGAAAGCAAGCTTTCTAGACCAT
BO18574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 561 | CG4349-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..656 | 14..574 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107477..13107900 | 574..151 | 2120 | 100 | Minus |
| X | 23542271 | X | 13107961..13108099 | 152..14 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:52:34 has no hits.
BO18574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:37 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:01 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:27 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 99..656 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:37 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:05 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 99..656 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:05 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107474..13107899 | 152..576 | 99 | <- | Minus |
| X | 13107962..13108096 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:27 Download gff for
BO18574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001507..13001932 | 152..576 | 99 | <- | Minus |
| arm_X | 13001995..13002129 | 17..151 | 100 | | Minus |
BO18574.pep Sequence
Translation from 16 to 592
> BO18574.pep
MAWCFRDIRRHMCMLVRQNFAKSCEKKLNDQINMELKASHQYLAMAYHFD
RSDISSPGMHRFFLKASVEEREHAEKIMTYMNKRGGLIILSSVPQPLPCF
ASTLDALKHAMKMELEVNKHLLDLHALAGKEADPNLCDFIEANFLQEQVD
GQKILADYISQLEKAQNQVGEFLFDKYMGSGMHPAKASFLDH
BO18574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-PA | 186 | CG4349-PA | 1..186 | 1..186 | 979 | 100 | Plus |
| Fer1HCH-PJ | 169 | CG2216-PJ | 4..167 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PD | 205 | CG2216-PD | 40..203 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PC | 205 | CG2216-PC | 40..203 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PB | 205 | CG2216-PB | 40..203 | 23..176 | 225 | 35.5 | Plus |
