Clone Sequence Records
BO18576.3prime Sequence
683 bp (683 high quality bases) assembled on 2006-10-13
> BO18576.3prime
ATGGTCTAGAAAGCTTGCTTTGTCCATCGCCGTGCCAGCAGGATTAGCCT
CTCCACCATCGCCGTCCACATCCGCCTGCTCGATAGCCTTGGGCGCCGTG
GGATCGGACACGCTGCCAAAGTAATTGCCCGTGGGCTCAATCTCGATCTC
GCGCTCCACGTCGTCCAGTTTCGGTGGTGCTGGCACCGTAATCATCAGTA
TTCCGTCCGCAGAGAAGGTGGCCCGTGCCTGTGTGGCATCGTAGTGCCGT
GGTAGCTTGTAGGATCGCGTAAACTCGCGAGTGATGCACAACTGACCCTT
CTCCGCCCGGTCATCCGCCTGCTTGCCCTCCACGCACACGGTGTCGCTGT
TTTTGGCCTTCACCGTGAGCTCAGAGATCTGAAAGTGGTGCACGTCCAGC
ACCACCTTGAAGGTGCCCCGACCCAGGGAGTCCGGTTCGGTGCCGGTCTC
TATGACCACTCGCCCAACCAGACAGGATCCATGGCACCAGGCACTGTCGT
CCATCCGCAAGTGAAAGTCCCGCGCACATACGTCCAGGTCGTGGGAGAGA
TAGTAGTGCCTCTGCCGGCACTTGGACTCCCCGGTGGACCAGTGGCGACG
CGGCGGTTGCCAGTGATGGTGACCATGCTCGTGATCATGCTCCCAATCCC
AGTCCCAGTGGATGGGCATGTCGACTGATAACT
BO18576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 654 | CG13133-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..805 | 670..19 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091585..10092236 | 19..670 | 3260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:19:12 has no hits.
BO18576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:55 Download gff for
BO18576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-PA | 1..654 | 16..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:27 Download gff for
BO18576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 13..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:25 Download gff for
BO18576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 13..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:25 Download gff for
BO18576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091579..10092240 | 13..677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:27 Download gff for
BO18576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091579..10092240 | 13..677 | 99 | | Plus |
BO18576.5prime Sequence
683 bp (683 high quality bases) assembled on 2006-10-13
> BO18576.5prime
GAAGTTATCAGTCGACATGCCCATCCACTGGGACTGGGATTGGGAGCATG
ATCACGAGCATGGTCACCATCACTGGCAACCGCCGCGTCGCCACTGGTCC
ACCGGGGAGTCCAAGTGCCGGCAGAGGCACTACTATCTCTCCCACGACCT
GGACGTATGTGCGCGGGACTTTCACTTGCGGATGGACGACAGTGCCTGGT
GCCATGGATCCTGTCTGGTTGGGCGAGTGGTCATAGAGACCGGCACCGAA
CCGGACTCCCTGGGTCGGGGCACCTTCAAGGTGGTGCTGGACGTGCACCA
CTTTCAGATCTCTGAGCTCACGGTGAAGGCCAAAAACAGCGACACCGTGT
GCGTGGAGGGCAAGCAGGCGGATGACCGGGCGGAGAAGGGTCAGTTGTGC
ATCACTCGCGAGTTTACGCGATCCTACAAGCTACCACGGCACTACGATGC
CACACAGGCACGGGCCACCTTCTCTGCGGACGGAATACTGATGATTACGG
TGCCAGCACCACCGAAACTGGACGACGTGGAGCGCGAGATCGAGATTGAG
CCCACGGGCAATTACTTTGGCAGCGTGTCCGATCCCACGGCGCCCAAGGC
TATCGAGCAGGCGGATGTGGACGGCGATGGTGGAGAGGCTAATCCTGCTG
GCACGGCGATGGACAAAGCAAGCTTTCTAGACC
BO18576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 654 | CG13133-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..805 | 16..667 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091585..10092236 | 667..16 | 3260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:52:16 has no hits.
BO18576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:55 Download gff for
BO18576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-PA | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:09 Download gff for
BO18576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:24 Download gff for
BO18576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 9..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:24 Download gff for
BO18576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091579..10092240 | 9..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:09 Download gff for
BO18576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091579..10092240 | 9..673 | 99 | | Minus |
BO18576.complete Sequence
685 bp assembled on 2006-10-11
GenBank Submission: FJ634479
> BO18576.complete
GAAGTTATCAGTCGACATGCCCATCCACTGGGACTGGGATTGGGAGCATG
ATCACGAGCATGGTCACCATCACTGGCAACCGCCGCGTCGCCACTGGTCC
ACCGGGGAGTCCAAGTGCCGGCAGAGGCACTACTATCTCTCCCACGACCT
GGACGTATGTGCGCGGGACTTTCACTTGCGGATGGACGACAGTGCCTGGT
GCCATGGATCCTGTCTGGTTGGGCGAGTGGTCATAGAGACCGGCACCGAA
CCGGACTCCCTGGGTCGGGGCACCTTCAAGGTGGTGCTGGACGTGCACCA
CTTTCAGATCTCTGAGCTCACGGTGAAGGCCAAAAACAGCGACACCGTGT
GCGTGGAGGGCAAGCAGGCGGATGACCGGGCGGAGAAGGGTCAGTTGTGC
ATCACTCGCGAGTTTACGCGATCCTACAAGCTACCACGGCACTACGATGC
CACACAGGCACGGGCCACCTTCTCTGCGGACGGAATACTGATGATTACGG
TGCCAGCACCACCGAAACTGGACGACGTGGAGCGCGAGATCGAGATTGAG
CCCACGGGCAATTACTTTGGCAGCGTGTCCGATCCCACGGCGCCCAAGGC
TATCGAGCAGGCGGATGTGGACGGCGATGGTGGAGAGGCTAATCCTGCTG
GCACGGCGATGGACAAAGCAAGCTTTCTAGACCAT
BO18576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 654 | CG13133-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..805 | 16..667 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091585..10092236 | 667..16 | 3260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:32:00 has no hits.
BO18576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:38 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:03 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 180..841 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:09 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 155..805 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:38 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 1..654 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:18 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 155..805 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:18 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091582..10092235 | 17..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:09 Download gff for
BO18576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091582..10092235 | 17..669 | 99 | | Minus |
BO18576.pep Sequence
Translation from 16 to 685
> BO18576.pep
MPIHWDWDWEHDHEHGHHHWQPPRRHWSTGESKCRQRHYYLSHDLDVCAR
DFHLRMDDSAWCHGSCLVGRVVIETGTEPDSLGRGTFKVVLDVHHFQISE
LTVKAKNSDTVCVEGKQADDRAEKGQLCITREFTRSYKLPRHYDATQARA
TFSADGILMITVPAPPKLDDVEREIEIEPTGNYFGSVSDPTAPKAIEQAD
VDGDGGEANPAGTAMDKASFLDH
BO18576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 217 | CG13133-PA | 1..217 | 1..217 | 1209 | 100 | Plus |
| Hsp27-PB | 213 | CG4466-PB | 84..210 | 81..216 | 192 | 37.7 | Plus |
| Hsp27-PA | 213 | CG4466-PA | 84..210 | 81..216 | 192 | 37.7 | Plus |
| Hsp23-PB | 186 | CG4463-PB | 66..180 | 82..198 | 185 | 38.7 | Plus |
| Hsp23-PA | 186 | CG4463-PA | 66..180 | 82..198 | 185 | 38.7 | Plus |
