Clone Sequence Records
BO18577.3prime Sequence
662 bp (662 high quality bases) assembled on 2006-10-13
> BO18577.3prime
ATGGTCTAGAAAGCTTGCCGTTTGATCCACCTCGAAGTCCTTGATCTGGG
CTGGATATTGAATGGCGTGCTCCACCTGTATTAGCAGTCCTATGGCCCTG
AAATTATCATGGATCATGGCGTACTCCTGGAGCGCTCTTAGGTGTCTCAA
TGCCTCTTCGTCGTTGCTGATGGAGATCTCGGCCGCAGACTCTGACAAAT
CATTAGTATTGGGTTCGGCGGCATTAAAGACTGTAAACTGTTCCCCATCC
CGCTGCCGATCCGTTTGCACTTCGTAGTCCTTCTGGATCTTGATATCGAC
ATCATCCAATGGCTGCTTTCGTTTGCGATACGTACGCATTTGGCGGGGAA
TAACTGTGCTGACAGTGGTGCCCATAGACAGCATCCTGCCTTTCTGGATA
CCGGTCTCCAAACTGACCACCGCTTCATCGAAATCATTGATGGAAAGTTC
CTGCGGCGGTGGGACAGGGTCATCCTTTAGAATTTCGGACATCTCGTCGT
AGAACTGCCAGTTTGGATGGAAATGCGGTACCTTCGCCAGGAGCTTGCTC
CTTATGCTATAGTAGGTCTTCTTCAGGTTCCTAAATTTTCGATCCAGCTG
AACTGCATCGATATCTGTCATTCCCTGGCTTTCAAGGGCAACGACCATGT
CGACTGATAACT
BO18577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-PA | 633 | CG13896-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-RB | 972 | CG13896-RB | 218..847 | 648..19 | 3150 | 100 | Minus |
| CG13896-RC | 974 | CG13896-RC | 220..849 | 648..19 | 3150 | 100 | Minus |
| CG13896-RA | 1000 | CG13896-RA | 246..875 | 648..19 | 3150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 710945..711574 | 19..648 | 3150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:12:03 has no hits.
BO18577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:56 Download gff for
BO18577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:53 Download gff for
BO18577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 19..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:48 Download gff for
BO18577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 19..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:48 Download gff for
BO18577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 710945..711577 | 19..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:53 Download gff for
BO18577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 710945..711577 | 19..651 | 99 | | Plus |
BO18577.5prime Sequence
662 bp (662 high quality bases) assembled on 2006-10-13
> BO18577.5prime
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGGCAA
GCTTTCTAGACC
BO18577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-PA | 633 | CG13896-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-RB | 972 | CG13896-RB | 218..847 | 17..646 | 3150 | 100 | Plus |
| CG13896-RC | 974 | CG13896-RC | 220..849 | 17..646 | 3150 | 100 | Plus |
| CG13896-RA | 1000 | CG13896-RA | 246..875 | 17..646 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 710945..711574 | 646..17 | 3150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:44 has no hits.
BO18577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:56 Download gff for
BO18577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:40 Download gff for
BO18577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 14..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:07 Download gff for
BO18577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 14..646 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:07 Download gff for
BO18577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 710945..711577 | 14..646 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:40 Download gff for
BO18577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 710945..711577 | 14..646 | 99 | | Minus |
BO18577.complete Sequence
664 bp assembled on 2006-10-11
GenBank Submission: FJ634480
> BO18577.complete
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGGCAA
GCTTTCTAGACCAT
BO18577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-RB | 633 | CG13896-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
| CG13896-RC | 633 | CG13896-PC | 1..630 | 17..646 | 3150 | 100 | Plus |
| CG13896-RA | 633 | CG13896-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-RB | 972 | CG13896-RB | 218..847 | 17..646 | 3150 | 100 | Plus |
| CG13896-RC | 974 | CG13896-RC | 220..849 | 17..646 | 3150 | 100 | Plus |
| CG13896-RA | 1000 | CG13896-RA | 246..875 | 17..646 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 710945..711574 | 646..17 | 3150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:59:35 has no hits.
BO18577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:39 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RB | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:06 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RB | 215..847 | 14..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:43 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 246..875 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:39 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RB | 215..847 | 14..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:06 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 246..875 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:06 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 710943..711574 | 17..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:43 Download gff for
BO18577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 710943..711574 | 17..648 | 99 | | Minus |
BO18577.pep Sequence
Translation from 16 to 664
> BO18577.pep
MVVALESQGMTDIDAVQLDRKFRNLKKTYYSIRSKLLAKVPHFHPNWQFY
DEMSEILKDDPVPPPQELSINDFDEAVVSLETGIQKGRMLSMGTTVSTVI
PRQMRTYRKRKQPLDDVDIKIQKDYEVQTDRQRDGEQFTVFNAAEPNTND
LSESAAEISISNDEEALRHLRALQEYAMIHDNFRAIGLLIQVEHAIQYPA
QIKDFEVDQTASFLDH
BO18577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-PB | 210 | CG13896-PB | 1..210 | 1..210 | 1075 | 100 | Plus |
| CG13896-PC | 210 | CG13896-PC | 1..210 | 1..210 | 1075 | 100 | Plus |
| CG13896-PA | 210 | CG13896-PA | 1..210 | 1..210 | 1075 | 100 | Plus |
