Clone Sequence Records
BO18578.3prime Sequence
671 bp (671 high quality bases) assembled on 2006-10-13
> BO18578.3prime
ATGGTCTAGAAAGCTTGCGGTGGACACGTGCATGGATTTCCATTTCCCAT
CCTTCTGAAGGCGGTACTGCACCCGGTCTGCGATTTGGTCGAGACCCACC
TTCAGGAAGTCCCAACGCTGCGGTTGGAATTTCCAAGCGGTATAGCTTGC
TGGTCTCTCGATGGATTTTCCTCTGTGATCCAGAAGGAACTGATCGTGCT
TTGCCTTGAGATCATCGTAGTTAATCGGTTCTCCACAGGGACAGATGTGA
CCCCTGATTTGGGCAGCCAAATTCTCCTTCGCCCACAAAGCATCCATTTC
GCTTTGGTCAAGTTCCACGGCGGTGGCTCCAATCAATCTCACCTGCCAGG
CATTCTGATTTCCGGCCTTATCCTTAACATCTGGCATATAGAAGGTGATG
CAGGCCTTGGGATTGGCCTGAAGGTTCTTGAAGTTGCGAACGTACCGATG
GGTGATGTAGAACACACAGTTATCCTGGGTGAGTCCGCGGTACAGAACAG
TGCGGTTGAGCACACCGAATTCCTCGTCCACGGTGGCCAGGTTCATTTCC
TGTATGAATCCATCGGGATGTCCCTTGGCAGCTTCCTGAAGGATCTCCTT
AAAAAATTCAACGGGATCGGAGGGAAAGTCCTCGATTTTGGCCAAAGAGG
AGGTCATGTCGACTGATAACT
BO18578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 642 | CG15343-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..774 | 657..19 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 143..657 | 2575 | 100 | Plus |
| X | 23542271 | X | 8272498..8272621 | 19..142 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:12:48 has no hits.
BO18578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:57 Download gff for
BO18578.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:42 Download gff for
BO18578.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 11..665 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:19 Download gff for
BO18578.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 11..665 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:19 Download gff for
BO18578.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272493..8272621 | 11..142 | 96 | <- | Plus |
| X | 8272693..8273214 | 143..665 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:42 Download gff for
BO18578.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166526..8166654 | 11..142 | 96 | <- | Plus |
| arm_X | 8166726..8167247 | 143..665 | 99 | | Plus |
BO18578.5prime Sequence
671 bp (671 high quality bases) assembled on 2006-10-13
> BO18578.5prime
GAAGTTATCAGTCGACATGACCTCCTCTTTGGCCAAAATCGAGGACTTTC
CCTCCGATCCCGTTGAATTTTTTAAGGAGATCCTTCAGGAAGCTGCCAAG
GGACATCCCGATGGATTCATACAGGAAATGAACCTGGCCACCGTGGACGA
GGAATTCGGTGTGCTCAACCGCACTGTTCTGTACCGCGGACTCACCCAGG
ATAACTGTGTGTTCTACATCACCCATCGGTACGTTCGCAACTTCAAGAAC
CTTCAGGCCAATCCCAAGGCCTGCATCACCTTCTATATGCCAGATGTTAA
GGATAAGGCCGGAAATCAGAATGCCTGGCAGGTGAGATTGATTGGAGCCA
CCGCCGTGGAACTTGACCAAAGCGAAATGGATGCTTTGTGGGCGAAGGAG
AATTTGGCTGCCCAAATCAGGGGTCACATCTGTCCCTGTGGAGAACCGAT
TAACTACGATGATCTCAAGGCAAAGCACGATCAGTTCCTTCTGGATCACA
GAGGAAAATCCATCGAGAGACCAGCAAGCTATACCGCTTGGAAATTCCAA
CCGCAGCGTTGGGACTTCCTGAAGGTGGGTCTCGACCAAATCGCAGACCG
GGTGCAGTACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGT
CCACCGCAAGCTTTCTAGACC
BO18578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 642 | CG15343-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..774 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 531..17 | 2575 | 100 | Minus |
| X | 23542271 | X | 8272498..8272621 | 655..532 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:46:25 has no hits.
BO18578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:24:57 Download gff for
BO18578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:55 Download gff for
BO18578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 9..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:12 Download gff for
BO18578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 9..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:12 Download gff for
BO18578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272493..8272621 | 532..663 | 96 | <- | Minus |
| X | 8272693..8273214 | 9..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:55 Download gff for
BO18578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166526..8166654 | 532..663 | 96 | <- | Minus |
| arm_X | 8166726..8167247 | 9..531 | 99 | | Minus |
BO18578.complete Sequence
673 bp assembled on 2006-10-11
GenBank Submission: FJ634481
> BO18578.complete
GAAGTTATCAGTCGACATGACCTCCTCTTTGGCCAAAATCGAGGACTTTC
CCTCCGATCCCGTTGAATTTTTTAAGGAGATCCTTCAGGAAGCTGCCAAG
GGACATCCCGATGGATTCATACAGGAAATGAACCTGGCCACCGTGGACGA
GGAATTCGGTGTGCTCAACCGCACTGTTCTGTACCGCGGACTCACCCAGG
ATAACTGTGTGTTCTACATCACCCATCGGTACGTTCGCAACTTCAAGAAC
CTTCAGGCCAATCCCAAGGCCTGCATCACCTTCTATATGCCAGATGTTAA
GGATAAGGCCGGAAATCAGAATGCCTGGCAGGTGAGATTGATTGGAGCCA
CCGCCGTGGAACTTGACCAAAGCGAAATGGATGCTTTGTGGGCGAAGGAG
AATTTGGCTGCCCAAATCAGGGGTCACATCTGTCCCTGTGGAGAACCGAT
TAACTACGATGATCTCAAGGCAAAGCACGATCAGTTCCTTCTGGATCACA
GAGGAAAATCCATCGAGAGACCAGCAAGCTATACCGCTTGGAAATTCCAA
CCGCAGCGTTGGGACTTCCTGAAGGTGGGTCTCGACCAAATCGCAGACCG
GGTGCAGTACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGT
CCACCGCAAGCTTTCTAGACCAT
BO18578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 642 | CG15343-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..774 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 531..17 | 2575 | 100 | Minus |
| X | 23542271 | X | 8272498..8272621 | 655..532 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:48 has no hits.
BO18578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:21 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:58 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:23 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 136..774 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:23 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:25 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 136..774 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:25 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272496..8272621 | 532..657 | 98 | <- | Minus |
| X | 8272693..8273207 | 17..531 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:23 Download gff for
BO18578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166529..8166654 | 532..657 | 98 | <- | Minus |
| arm_X | 8166726..8167240 | 17..531 | 100 | | Minus |
BO18578.pep Sequence
Translation from 16 to 673
> BO18578.pep
MTSSLAKIEDFPSDPVEFFKEILQEAAKGHPDGFIQEMNLATVDEEFGVL
NRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDKAGN
QNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDL
KAKHDQFLLDHRGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRL
QKDGKWKSMHVSTASFLDH
BO18578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 213 | CG15343-PA | 1..213 | 1..213 | 1144 | 100 | Plus |
