Clone Sequence Records
BO18581.3prime Sequence
910 bp (776 high quality bases) assembled on 2006-10-13
> BO18581.3prime
ATGGTCTAGAAAGCTTGCTACGAACTTCGCACTGCGAATGAATCCGTCGC
TGCTTGCTATGTATACCGTGTCGTTGGCTCCACAGCAAATGCTGTTCACA
CAACTGCCCACCTCCACCTCGCCCAGGGCTTTTGGCTTTCCTGCTTCCAG
ATCGGTCCATCCCTTAACCTTTTTGTCATAGCCGCCGGAGTACAAATAGG
TCTCATCTCCGCAAAGGGCGTTTATGATCAACTCATGGCAGTCCGGCAAG
TGCCAAATTTTGGAGTACTGTTGCTGCGAAAGATTGTTGACCAGTTGCAA
ACCCATCCCAGAGCGATCGGGAAAGGCCAGATAGCTCCGCTTGCCATCCA
CCATGGGCCCGAGAAGATGGAGCGGAGACTTACCTGGAATCACCGCCTTG
TTGCTGTACTTTCCAGACTTGCCCTCCGCCACCTGAGACACCACCACGTC
CAGGTCGCGAACAGTGTAAATGAGATTCTGCTCGCCGGCCAGTGACTTGA
CCTCCTCCACCAGGCTGTACTTGAAGAGCATGCGATCGTTGGTCCAAGTG
GTCACCACACCCTTGTCATCGCCCGTGTAAAGCACGGATCCGTCGCAGTA
CATGGCCTGGATGGCGTCGTCGCAGCGGAATAGTTCCTGCACTGACTCGT
CTCCATAGGGAGGCAGCATGAAGTGAACCTGGCCATCACAGCTGCTCGAG
TAGACCTTTCCGTGCTGATTAATGGCCATGCAGTATATGTACGCCTCGTG
AGCGTTTACAGTGGCCAATAGTTGCAGTTCCGGTGACCAAATTCGTATTT
TACCGTCAGCGCCTCCGGGAAACAGCTGTCCATCGAAGTACGCCACGCAT
GTGGCGTCCCCTTCATGACCCTCGGAGGACGTGTGCTCGATGCGGGCGTT
GTTGGCCATG
BO18581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 894 | CG14285-RA | 1..891 | 909..19 | 4380 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 22..912 | 909..19 | 4410 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025297..19025843 | 789..243 | 2735 | 100 | Minus |
3R | 32079331 | 3R | 19025901..19026126 | 244..19 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 19025120..19025236 | 909..793 | 555 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:00 has no hits.
BO18581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:00 Download gff for
BO18581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-PA | 1..894 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:39 Download gff for
BO18581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 5..902 | 10..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:11 Download gff for
BO18581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 21..918 | 10..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:11 Download gff for
BO18581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025119..19025236 | 793..910 | 97 | -> | Minus |
3R | 19025294..19025842 | 244..792 | 99 | -> | Minus |
3R | 19025902..19026132 | 10..243 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:39 Download gff for
BO18581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14850841..14850958 | 793..910 | 97 | -> | Minus |
arm_3R | 14851016..14851564 | 244..792 | 99 | -> | Minus |
arm_3R | 14851624..14851854 | 10..243 | 98 | | Minus |
BO18581.5prime Sequence
722 bp (716 high quality bases) assembled on 2006-10-13
> BO18581.5prime
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATG
BO18581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 894 | CG14285-RA | 1..706 | 17..722 | 3530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 22..727 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025294..19025843 | 134..683 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 19025120..19025236 | 17..133 | 585 | 100 | Plus |
3R | 32079331 | 3R | 19025901..19025941 | 682..722 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:36:13 has no hits.
BO18581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:01 Download gff for
BO18581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-PA | 1..706 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:08 Download gff for
BO18581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..711 | 15..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:32 Download gff for
BO18581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 14..727 | 7..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:32 Download gff for
BO18581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025112..19025236 | 7..133 | 97 | -> | Plus |
3R | 19025294..19025842 | 134..682 | 100 | -> | Plus |
3R | 19025902..19025941 | 683..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:08 Download gff for
BO18581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14850834..14850958 | 7..133 | 97 | -> | Plus |
arm_3R | 14851016..14851564 | 134..682 | 100 | -> | Plus |
arm_3R | 14851624..14851663 | 683..722 | 100 | | Plus |
BO18581.complete Sequence
925 bp assembled on 2006-10-11
GenBank Submission: FJ634482
> BO18581.complete
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATGAGACCTATTTGTACTCCGGCGGCTATGA
CAAAAAGGTTAAGGGATGGACCGATCTGGAAGCAGGAAAGCCAAAAGCCC
TGGGCGAGGTGGAGGTGGGCAGTTGTGTGAACAGCATTTGCTGTGGAGCC
AACGACACGGTATACATAGCAAGCAGCGACGGATTCATTCGCAGTGCGAA
GTTCGTAGCAAGCTTTCTAGACCAT
BO18581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 894 | CG14285-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 22..912 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025294..19025843 | 134..683 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 19025901..19026126 | 682..907 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 19025120..19025236 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:33 has no hits.
BO18581.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:40 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:08 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..902 | 15..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:47 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 6..896 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:40 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..902 | 15..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:59 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 22..912 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:59 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025120..19025236 | 17..133 | 100 | -> | Plus |
3R | 19025294..19025842 | 134..682 | 100 | -> | Plus |
3R | 19025902..19026126 | 683..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:47 Download gff for
BO18581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14850842..14850958 | 17..133 | 100 | -> | Plus |
arm_3R | 14851016..14851564 | 134..682 | 100 | -> | Plus |
arm_3R | 14851624..14851848 | 683..909 | 99 | | Plus |
BO18581.pep Sequence
Translation from 16 to 925
> BO18581.pep
MANNARIEHTSSEGHEGDATCVAYFDGQLFSGGADGKIRIWSPELQLLAT
VNAHEAYIYCMAINQHGKVYSSSCDGQVHFMLPPYGDESVQELFRCDDAI
QAMYCDGSVLYTGDDKGVVTTWTNDRMLFKYSLVEEVKSLAGEQNLIYTV
RDLDVVVSQVAEGKSGKYSNKAVIPGKSPLHLLGPMVDGKRSYLAFPDRS
GMGLQLVNNLSQQQYSKIWHLPDCHELIINALCGDETYLYSGGYDKKVKG
WTDLEAGKPKALGEVEVGSCVNSICCGANDTVYIASSDGFIRSAKFVASF
LDH
BO18581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 297 | CG14285-PA | 1..297 | 1..297 | 1584 | 100 | Plus |