Clone BO18581 Report

Search the DGRC for BO18581

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG14285-RA
Protein status:BO18581.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO18581.3prime Sequence

910 bp (776 high quality bases) assembled on 2006-10-13

> BO18581.3prime
ATGGTCTAGAAAGCTTGCTACGAACTTCGCACTGCGAATGAATCCGTCGC
TGCTTGCTATGTATACCGTGTCGTTGGCTCCACAGCAAATGCTGTTCACA
CAACTGCCCACCTCCACCTCGCCCAGGGCTTTTGGCTTTCCTGCTTCCAG
ATCGGTCCATCCCTTAACCTTTTTGTCATAGCCGCCGGAGTACAAATAGG
TCTCATCTCCGCAAAGGGCGTTTATGATCAACTCATGGCAGTCCGGCAAG
TGCCAAATTTTGGAGTACTGTTGCTGCGAAAGATTGTTGACCAGTTGCAA
ACCCATCCCAGAGCGATCGGGAAAGGCCAGATAGCTCCGCTTGCCATCCA
CCATGGGCCCGAGAAGATGGAGCGGAGACTTACCTGGAATCACCGCCTTG
TTGCTGTACTTTCCAGACTTGCCCTCCGCCACCTGAGACACCACCACGTC
CAGGTCGCGAACAGTGTAAATGAGATTCTGCTCGCCGGCCAGTGACTTGA
CCTCCTCCACCAGGCTGTACTTGAAGAGCATGCGATCGTTGGTCCAAGTG
GTCACCACACCCTTGTCATCGCCCGTGTAAAGCACGGATCCGTCGCAGTA
CATGGCCTGGATGGCGTCGTCGCAGCGGAATAGTTCCTGCACTGACTCGT
CTCCATAGGGAGGCAGCATGAAGTGAACCTGGCCATCACAGCTGCTCGAG
TAGACCTTTCCGTGCTGATTAATGGCCATGCAGTATATGTACGCCTCGTG
AGCGTTTACAGTGGCCAATAGTTGCAGTTCCGGTGACCAAATTCGTATTT
TACCGTCAGCGCCTCCGGGAAACAGCTGTCCATCGAAGTACGCCACGCAT
GTGGCGTCCCCTTCATGACCCTCGGAGGACGTGTGCTCGATGCGGGCGTT
GTTGGCCATG

BO18581.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-PA 894 CG14285-RA 1..891 909..19 4380 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-RA 989 CG14285-RA 22..912 909..19 4410 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19025297..19025843 789..243 2735 100 Minus
3R 32079331 3R 19025901..19026126 244..19 1130 100 Minus
3R 32079331 3R 19025120..19025236 909..793 555 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:01:00 has no hits.

BO18581.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:00 Download gff for BO18581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-PA 1..894 15..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:39 Download gff for BO18581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 5..902 10..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:11 Download gff for BO18581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 21..918 10..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:11 Download gff for BO18581.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19025119..19025236 793..910 97 -> Minus
3R 19025294..19025842 244..792 99 -> Minus
3R 19025902..19026132 10..243 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:39 Download gff for BO18581.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14850841..14850958 793..910 97 -> Minus
arm_3R 14851016..14851564 244..792 99 -> Minus
arm_3R 14851624..14851854 10..243 98   Minus

BO18581.5prime Sequence

722 bp (716 high quality bases) assembled on 2006-10-13

> BO18581.5prime
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATG

BO18581.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-PA 894 CG14285-RA 1..706 17..722 3530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-RA 989 CG14285-RA 22..727 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19025294..19025843 134..683 2750 100 Plus
3R 32079331 3R 19025120..19025236 17..133 585 100 Plus
3R 32079331 3R 19025901..19025941 682..722 205 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:36:13 has no hits.

BO18581.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:01 Download gff for BO18581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-PA 1..706 17..722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:08 Download gff for BO18581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 1..711 15..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:32 Download gff for BO18581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 14..727 7..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:32 Download gff for BO18581.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19025112..19025236 7..133 97 -> Plus
3R 19025294..19025842 134..682 100 -> Plus
3R 19025902..19025941 683..722 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:08 Download gff for BO18581.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14850834..14850958 7..133 97 -> Plus
arm_3R 14851016..14851564 134..682 100 -> Plus
arm_3R 14851624..14851663 683..722 100   Plus

BO18581.complete Sequence

925 bp assembled on 2006-10-11

GenBank Submission: FJ634482

> BO18581.complete
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATGAGACCTATTTGTACTCCGGCGGCTATGA
CAAAAAGGTTAAGGGATGGACCGATCTGGAAGCAGGAAAGCCAAAAGCCC
TGGGCGAGGTGGAGGTGGGCAGTTGTGTGAACAGCATTTGCTGTGGAGCC
AACGACACGGTATACATAGCAAGCAGCGACGGATTCATTCGCAGTGCGAA
GTTCGTAGCAAGCTTTCTAGACCAT

BO18581.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-RA 894 CG14285-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-RA 989 CG14285-RA 22..912 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19025294..19025843 134..683 2750 100 Plus
3R 32079331 3R 19025901..19026126 682..907 1130 100 Plus
3R 32079331 3R 19025120..19025236 17..133 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:58:33 has no hits.

BO18581.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:40 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 1..894 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:08 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 1..902 15..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:47 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 6..896 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:40 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 1..902 15..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:59 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
CG14285-RA 22..912 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:59 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19025120..19025236 17..133 100 -> Plus
3R 19025294..19025842 134..682 100 -> Plus
3R 19025902..19026126 683..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:47 Download gff for BO18581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14850842..14850958 17..133 100 -> Plus
arm_3R 14851016..14851564 134..682 100 -> Plus
arm_3R 14851624..14851848 683..909 99   Plus

BO18581.pep Sequence

Translation from 16 to 925

> BO18581.pep
MANNARIEHTSSEGHEGDATCVAYFDGQLFSGGADGKIRIWSPELQLLAT
VNAHEAYIYCMAINQHGKVYSSSCDGQVHFMLPPYGDESVQELFRCDDAI
QAMYCDGSVLYTGDDKGVVTTWTNDRMLFKYSLVEEVKSLAGEQNLIYTV
RDLDVVVSQVAEGKSGKYSNKAVIPGKSPLHLLGPMVDGKRSYLAFPDRS
GMGLQLVNNLSQQQYSKIWHLPDCHELIINALCGDETYLYSGGYDKKVKG
WTDLEAGKPKALGEVEVGSCVNSICCGANDTVYIASSDGFIRSAKFVASF
LDH

BO18581.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14285-PA 297 CG14285-PA 1..297 1..297 1584 100 Plus