Clone Sequence Records
BO18582.3prime Sequence
854 bp (728 high quality bases) assembled on 2006-10-13
> BO18582.3prime
ATGGTCTAGAAAGCTTGCATTGGCGCTGTCTTCAAGTTTCATTTGTGACT
TCCGGAACTCATCGGATAGTCTAACCGTCACAGTCAAGGATGATAGAAAC
TCTTCTGGATCATCAAGAAAATTCGAATGCCGTGATTCGAAAACAGCCAT
ATTCCGATCCAGTTCCTTGTGCAATTCACTCATTAGATTCACAAGATCCT
TGACCTCGCCATTGAAATCAGCGATTTCGCGCTTTAGACGACTTTTGGAA
AGGCAAGCTGCATTTTGTTTAAGGAATCGTGTGGTGTGAGCGTGGTCTAG
TTTTTTTGCATCCGCTTTGGACATCTTGGCATTGACAAGGTAATTGTATC
GCTCCTGGCACAACTTCAGTTCCTTGGAAACTTCGCTGGACCAAGCTACA
TACTTAACGGCTTCAGAATTTAAATCTATAAGATTGCCTTCCATGCAGCG
AATCCTTTCGCGCATTTGGTGGATGATTTCGCGGAGTTTCCTATACCTGC
AGATCAGTTCGTCTATTTGCAATTGAATGCGATTGTGGGCCTGACGAAGA
CTCCTGGCTTCCAGCAATTCATTGCCGCACAAAGGTTGGTTATTCGGACA
AATGGCTACAGACTTTTCCTTAATCTTAATGTCGATTCCTTGGTTTTTCC
GCTGTTTGCACTTTACTTGAGCACCGGCTTCTATTTCTATTTCAGCAGTT
TCTTCGCTAATTTCTTCGCTGCACTTCTTAACTTGACGCTTCCTAATCGC
TATTTGCATAAGCTCAATCTGTCGAATCAGGCAGTCAATATCGTGTGCCA
TTTTCACTGGTCGATCATCAGACTGCTCTGAACGATCGAGAATATCCATT
TCTT
BO18582.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14556-PA | 939 | CG14556-RA | 101..936 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14556-RB | 1210 | CG14556-RB | 235..1070 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26126893..26127728 | 854..19 | 4180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:42:35 has no hits.
BO18582.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:02 Download gff for
BO18582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-PA | 101..939 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:33:20 Download gff for
BO18582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 235..1070 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:04 Download gff for
BO18582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 235..1070 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:04 Download gff for
BO18582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26126893..26127726 | 21..854 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:33:20 Download gff for
BO18582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21952615..21953448 | 21..854 | 100 | -> | Minus |
BO18582.complete Sequence
1036 bp assembled on 2007-03-23
GenBank Submission: FJ634483
> BO18582.complete
GAAGTTATCAGTCGACATGGAACTTGAAAACGTTAAAAGTTTGGGGGAAA
TTGCTAAATGTGCAAAGATGCCATTAAACGAAATGGATCTCATATCCCGA
ACTTCGAAATGTGGAAAAAGTGTTTTAGAAATCTTCGACGTCGATGAGAA
GGTCAGTTTCTCATATGATGGAGGTGAGGAGGAAGAAATGGATATTCTCG
ATCGTTCAGAGCAGTCTGATGATCGACCAGTGAAAATGGCACACGATATT
GACTGCCTGATTCGACAGATTGAGCTTATGCAAATAGCGATTAGGAAGCG
TCAAGTTAAGAAGTGCAGCGAAGAAATTAGCGAAGAAACTGCTGAAATAG
AAATAGAAGCCGGTGCTCAAGTAAAGTGCAAACAGCGGAAAAACCAAGGA
ATCGACATTAAGATTAAGGAAAAGTCTGTAGCCATTTGTCCGAATAACCA
ACCTTTGTGCGGCAATGAATTGCTGGAAGCCAGGAGTCTTCGTCAGGCCC
ACAATCGCATTCAATTGCAAATAGACGAACTGATCTGCAGGTATAGGAAA
CTCCGCGAAATCATCCACCAAATGCGCGAAAGGATTCGCTGCATGGAAGG
CAATCTTATAGATTTAAATTCTGAAGCCGTTAAGTATGTAGCTTGGTCCA
GCGAAGTTTCCAAGGAACTGAAGTTGTGCCAGGAGCGATACAATTACCTT
GTCAATGCCAAGATGTCCAAAGCGGATGCAAAAAAACTAGACCACGCTCA
CACCACACGATTCCTTAAACAAAATGCAGCTTGCCTTTCCAAAAGTCGTC
TAAAGCGCGAAATCGCTGATTTCAATGGCGAGGTCAAGGATCTTGTGAAT
CTAATGAGTGAATTGCACAAGGAACTGGATCGGAATATGGCTGTTTTCGA
ATCACGGCATTCGAATTTTCTTGATGATCCAGAAGAGTTTCTATCATCCT
TGACTGTGACGGTTAGACTATCCGATGAGTTCCGGAAGTCACAAATGAAA
CTTGAAGACAGCGCCAATGCAAGCTTTCTAGACCAT
BO18582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14556-RB | 1005 | CG14556-PB | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14556-RB | 1210 | CG14556-RB | 68..1070 | 16..1018 | 5015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26126726..26127728 | 16..1018 | 5015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:24 has no hits.
BO18582.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:10 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 1..1005 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:08 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 39..1041 | 16..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:57 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 69..1070 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:10 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 39..1041 | 16..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:05 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14556-RB | 69..1070 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:05 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26126727..26127728 | 17..1020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:57 Download gff for
BO18582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21952449..21953450 | 17..1020 | 99 | | Plus |
BO18582.pep Sequence
Translation from 16 to 1036
> BO18582.pep
MELENVKSLGEIAKCAKMPLNEMDLISRTSKCGKSVLEIFDVDEKVSFSY
DGGEEEEMDILDRSEQSDDRPVKMAHDIDCLIRQIELMQIAIRKRQVKKC
SEEISEETAEIEIEAGAQVKCKQRKNQGIDIKIKEKSVAICPNNQPLCGN
ELLEARSLRQAHNRIQLQIDELICRYRKLREIIHQMRERIRCMEGNLIDL
NSEAVKYVAWSSEVSKELKLCQERYNYLVNAKMSKADAKKLDHAHTTRFL
KQNAACLSKSRLKREIADFNGEVKDLVNLMSELHKELDRNMAVFESRHSN
FLDDPEEFLSSLTVTVRLSDEFRKSQMKLEDSANASFLDH
BO18582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14556-PB | 334 | CG14556-PB | 1..334 | 1..334 | 1695 | 100 | Plus |
| SIP3-PA | 290 | CG15468-PA | 66..248 | 119..301 | 194 | 25.8 | Plus |
