Clone Sequence Records
BO18588.3prime Sequence
893 bp (756 high quality bases) assembled on 2006-10-13
> BO18588.3prime
ATGGTCTAGAAAGCTTGCTTCTTTTTTGCCAAGTATCTCCTTTGGACCAT
AAAGTTGCTGGGGCGTTGGTATGTCCTCAACGAAAAAGTTGGCTGGTATT
AAATGAAAAACCGTAGACATTACATCATAAAGGATATTTTCCACCGTCTC
AACGATGAGTGGTTTCAGGGCCTCGTAGAAATCCCGCCAGTTTTCATTGA
AAAACTCATTCGTACTGCGCTCCACCTCCTTGCTACGTCCATTGAATAGA
TTGTCCAGATAAGTGCGCACTTTGGACAGATTCAGTTGAACCTGCACAGC
GGTCACGTTGTCGAAGGTGAAGCCACCCTTTTCATACAGACGTATTTTTG
TTAGTAGCAAAATGTCAAGATCATCAATCTCAATAAATATTTTGCCAGAG
CCACTCAGTGGTATAAGGAGTATTCGTCCAGCCATTTCATACCTTCCATC
CAGTCTCATTTTCGGAAGATATATTTTGGTCTGCCAGCTAAAGTCTTTCT
TGCTCACACGACTCTCCTTGACCTTTGTGTTGGCAAAACCCTTGACCACC
AGGTCAGTCAGATTGGCTCTGATGGTGGCCACCTCGTTGTTATCCTGCTT
GAAAACTATATCCCTAACTCTCATGGGATCAAAGGGACCGAACCGCTCGA
GCACCTCTGGTATTCCAATGTTCAACTGATCAAGAAGCTTCTGAATGCTA
TTCGTAGAGCACTTGGTGAAGCCCGGTTCGTAGATCCGACAAGATGGCAG
AAAGGCAGGTTTTTCGGAGTAGTAGGCAACGGCTGAAACCAACGACCTAT
CCATGGCGATTTCATTCAGGCACAAAATGGCCAATAATCCACTCCAAATG
CCGAGCAAAGTGCGGCCGTAGCGCGTGCTGCTCATGTCAACTG
BO18588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 870 | CG14259-RA | 1..867 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 120..987 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095771 | 375..19 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 27094839..27095088 | 758..509 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 27095212..27095346 | 509..375 | 675 | 100 | Minus |
3R | 32079331 | 3R | 27094652..27094779 | 886..759 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:36:51 has no hits.
BO18588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:06 Download gff for
BO18588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-PA | 1..870 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:11 Download gff for
BO18588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 156..1028 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:36 Download gff for
BO18588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 120..992 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:36 Download gff for
BO18588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094839..27095088 | 509..758 | 100 | -> | Minus |
3R | 27095213..27095346 | 375..508 | 100 | -> | Minus |
3R | 27094652..27094779 | 759..886 | 100 | -> | Minus |
3R | 27095416..27095776 | 11..374 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:11 Download gff for
BO18588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920374..22920501 | 759..886 | 100 | -> | Minus |
arm_3R | 22920561..22920810 | 509..758 | 100 | -> | Minus |
arm_3R | 22920935..22921068 | 375..508 | 100 | -> | Minus |
arm_3R | 22921138..22921498 | 11..374 | 98 | | Minus |
BO18588.5prime Sequence
892 bp (786 high quality bases) assembled on 2006-10-13
> BO18588.5prime
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGGTCAAAGGAGATACTTGGCAAAAAAGAAGCAAGCTTT
BO18588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 870 | CG14259-RA | 1..867 | 17..883 | 4285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 120..987 | 16..883 | 4310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095771 | 527..883 | 1755 | 99.4 | Plus |
3R | 32079331 | 3R | 27094839..27095088 | 144..393 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 27095212..27095346 | 393..527 | 675 | 100 | Plus |
3R | 32079331 | 3R | 27094652..27094779 | 16..143 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:02:11 has no hits.
BO18588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:07 Download gff for
BO18588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-PA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:14 Download gff for
BO18588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 156..1028 | 16..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:48 Download gff for
BO18588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 120..992 | 16..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:48 Download gff for
BO18588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094652..27094779 | 16..143 | 100 | -> | Plus |
3R | 27094839..27095088 | 144..393 | 100 | -> | Plus |
3R | 27095213..27095346 | 394..527 | 100 | -> | Plus |
3R | 27095416..27095776 | 528..891 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:14 Download gff for
BO18588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920374..22920501 | 16..143 | 100 | -> | Plus |
arm_3R | 22920561..22920810 | 144..393 | 100 | -> | Plus |
arm_3R | 22920935..22921068 | 394..527 | 100 | -> | Plus |
arm_3R | 22921138..22921498 | 528..891 | 98 | | Plus |
BO18588.complete Sequence
901 bp assembled on 2006-10-11
GenBank Submission: FJ634484
> BO18588.complete
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAAGCAAGCTTTCTAGACCA
T
BO18588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 870 | CG14259-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 120..987 | 16..883 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095771 | 527..883 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 27094839..27095088 | 144..393 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 27095212..27095346 | 393..527 | 675 | 100 | Plus |
3R | 32079331 | 3R | 27094652..27094779 | 16..143 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:21 has no hits.
BO18588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:41 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:10 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:16 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 157..1014 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:41 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:22 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 121..978 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:22 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094839..27095088 | 144..393 | 100 | -> | Plus |
3R | 27095213..27095346 | 394..527 | 100 | -> | Plus |
3R | 27094653..27094779 | 17..143 | 100 | -> | Plus |
3R | 27095416..27095762 | 528..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:16 Download gff for
BO18588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920375..22920501 | 17..143 | 100 | -> | Plus |
arm_3R | 22920561..22920810 | 144..393 | 100 | -> | Plus |
arm_3R | 22920935..22921068 | 394..527 | 100 | -> | Plus |
arm_3R | 22921138..22921484 | 528..874 | 100 | | Plus |
BO18588.pep Sequence
Translation from 16 to 901
> BO18588.pep
MSSTRYGRTLLGIWSGLLAILCLNEIAMDRSLVSAVAYYSEKPAFLPSCR
IYEPGFTKCSTNSIQKLLDQLNIGIPEVLERFGPFDPMRVRDIVFKQDNN
EVATIRANLTDLVVKGFANTKVKESRVSKKDFSWQTKIYLPKMRLDGRYE
MAGRILLIPLSGSGKIFIEIDDLDILLLTKIRLYEKGGFTFDNVTAVQVQ
LNLSKVRTYLDNLFNGRSKEVERSTNEFFNENWRDFYEALKPLIVETVEN
ILYDVMSTVFHLIPANFFVEDIPTPQQLYGPKEILGKKEASFLDH
BO18588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 289 | CG14259-PA | 1..289 | 1..289 | 1485 | 100 | Plus |
CG17189-PA | 264 | CG17189-PA | 13..259 | 36..282 | 885 | 65.2 | Plus |
CG14457-PC | 270 | CG14457-PC | 17..263 | 32..280 | 607 | 46.6 | Plus |
CG14457-PB | 271 | CG14457-PB | 24..264 | 38..280 | 606 | 46.9 | Plus |
CG14457-PA | 144 | CG14457-PA | 1..137 | 143..280 | 404 | 52.9 | Plus |