Clone BO18588 Report

Search the DGRC for BO18588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG14259-RA
Protein status:BO18588.pep: validated full length
Sequenced Size:901

Clone Sequence Records

BO18588.3prime Sequence

893 bp (756 high quality bases) assembled on 2006-10-13

> BO18588.3prime
ATGGTCTAGAAAGCTTGCTTCTTTTTTGCCAAGTATCTCCTTTGGACCAT
AAAGTTGCTGGGGCGTTGGTATGTCCTCAACGAAAAAGTTGGCTGGTATT
AAATGAAAAACCGTAGACATTACATCATAAAGGATATTTTCCACCGTCTC
AACGATGAGTGGTTTCAGGGCCTCGTAGAAATCCCGCCAGTTTTCATTGA
AAAACTCATTCGTACTGCGCTCCACCTCCTTGCTACGTCCATTGAATAGA
TTGTCCAGATAAGTGCGCACTTTGGACAGATTCAGTTGAACCTGCACAGC
GGTCACGTTGTCGAAGGTGAAGCCACCCTTTTCATACAGACGTATTTTTG
TTAGTAGCAAAATGTCAAGATCATCAATCTCAATAAATATTTTGCCAGAG
CCACTCAGTGGTATAAGGAGTATTCGTCCAGCCATTTCATACCTTCCATC
CAGTCTCATTTTCGGAAGATATATTTTGGTCTGCCAGCTAAAGTCTTTCT
TGCTCACACGACTCTCCTTGACCTTTGTGTTGGCAAAACCCTTGACCACC
AGGTCAGTCAGATTGGCTCTGATGGTGGCCACCTCGTTGTTATCCTGCTT
GAAAACTATATCCCTAACTCTCATGGGATCAAAGGGACCGAACCGCTCGA
GCACCTCTGGTATTCCAATGTTCAACTGATCAAGAAGCTTCTGAATGCTA
TTCGTAGAGCACTTGGTGAAGCCCGGTTCGTAGATCCGACAAGATGGCAG
AAAGGCAGGTTTTTCGGAGTAGTAGGCAACGGCTGAAACCAACGACCTAT
CCATGGCGATTTCATTCAGGCACAAAATGGCCAATAATCCACTCCAAATG
CCGAGCAAAGTGCGGCCGTAGCGCGTGCTGCTCATGTCAACTG

BO18588.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 870 CG14259-RA 1..867 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 120..987 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095771 375..19 1785 100 Minus
3R 32079331 3R 27094839..27095088 758..509 1250 100 Minus
3R 32079331 3R 27095212..27095346 509..375 675 100 Minus
3R 32079331 3R 27094652..27094779 886..759 640 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:36:51 has no hits.

BO18588.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:06 Download gff for BO18588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-PA 1..870 18..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:11 Download gff for BO18588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 156..1028 11..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:36 Download gff for BO18588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 120..992 11..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:36 Download gff for BO18588.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27094839..27095088 509..758 100 -> Minus
3R 27095213..27095346 375..508 100 -> Minus
3R 27094652..27094779 759..886 100 -> Minus
3R 27095416..27095776 11..374 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:11 Download gff for BO18588.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920374..22920501 759..886 100 -> Minus
arm_3R 22920561..22920810 509..758 100 -> Minus
arm_3R 22920935..22921068 375..508 100 -> Minus
arm_3R 22921138..22921498 11..374 98   Minus

BO18588.5prime Sequence

892 bp (786 high quality bases) assembled on 2006-10-13

> BO18588.5prime
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGGTCAAAGGAGATACTTGGCAAAAAAGAAGCAAGCTTT

BO18588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 870 CG14259-RA 1..867 17..883 4285 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 120..987 16..883 4310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095771 527..883 1755 99.4 Plus
3R 32079331 3R 27094839..27095088 144..393 1250 100 Plus
3R 32079331 3R 27095212..27095346 393..527 675 100 Plus
3R 32079331 3R 27094652..27094779 16..143 640 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:02:11 has no hits.

BO18588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:07 Download gff for BO18588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-PA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:14 Download gff for BO18588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 156..1028 16..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:48 Download gff for BO18588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 120..992 16..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:48 Download gff for BO18588.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27094652..27094779 16..143 100 -> Plus
3R 27094839..27095088 144..393 100 -> Plus
3R 27095213..27095346 394..527 100 -> Plus
3R 27095416..27095776 528..891 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:14 Download gff for BO18588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920374..22920501 16..143 100 -> Plus
arm_3R 22920561..22920810 144..393 100 -> Plus
arm_3R 22920935..22921068 394..527 100 -> Plus
arm_3R 22921138..22921498 528..891 98   Plus

BO18588.complete Sequence

901 bp assembled on 2006-10-11

GenBank Submission: FJ634484

> BO18588.complete
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAAGCAAGCTTTCTAGACCA
T

BO18588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 870 CG14259-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 120..987 16..883 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095771 527..883 1785 100 Plus
3R 32079331 3R 27094839..27095088 144..393 1250 100 Plus
3R 32079331 3R 27095212..27095346 393..527 675 100 Plus
3R 32079331 3R 27094652..27094779 16..143 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:21 has no hits.

BO18588.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:41 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:10 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:16 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 157..1014 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:41 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:22 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 121..978 17..874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:22 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27094839..27095088 144..393 100 -> Plus
3R 27095213..27095346 394..527 100 -> Plus
3R 27094653..27094779 17..143 100 -> Plus
3R 27095416..27095762 528..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:16 Download gff for BO18588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920375..22920501 17..143 100 -> Plus
arm_3R 22920561..22920810 144..393 100 -> Plus
arm_3R 22920935..22921068 394..527 100 -> Plus
arm_3R 22921138..22921484 528..874 100   Plus

BO18588.pep Sequence

Translation from 16 to 901

> BO18588.pep
MSSTRYGRTLLGIWSGLLAILCLNEIAMDRSLVSAVAYYSEKPAFLPSCR
IYEPGFTKCSTNSIQKLLDQLNIGIPEVLERFGPFDPMRVRDIVFKQDNN
EVATIRANLTDLVVKGFANTKVKESRVSKKDFSWQTKIYLPKMRLDGRYE
MAGRILLIPLSGSGKIFIEIDDLDILLLTKIRLYEKGGFTFDNVTAVQVQ
LNLSKVRTYLDNLFNGRSKEVERSTNEFFNENWRDFYEALKPLIVETVEN
ILYDVMSTVFHLIPANFFVEDIPTPQQLYGPKEILGKKEASFLDH

BO18588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 289 CG14259-PA 1..289 1..289 1485 100 Plus
CG17189-PA 264 CG17189-PA 13..259 36..282 885 65.2 Plus
CG14457-PC 270 CG14457-PC 17..263 32..280 607 46.6 Plus
CG14457-PB 271 CG14457-PB 24..264 38..280 606 46.9 Plus
CG14457-PA 144 CG14457-PA 1..137 143..280 404 52.9 Plus