Clone Sequence Records
BO18590.3prime Sequence
835 bp (785 high quality bases) assembled on 2006-10-13
> BO18590.3prime
ATGGTCTAGAAAGCTTGCAGGCATTTTGCTGTACAGGTCCAGCAGGTTCT
GGTTCAGCAAGGATCCTCCCCGGGACATGGACGTCGCCACCTTTTCCGAG
GACGATGCCGATGTCGTGGGCTGCAGCTGTACAAACTCGCAGCCAGAGGA
GCTGGCCGCTGTGTCATTGAAAAGCACATTGCCGAAGGCCTGCTCGAACT
GCTGCTGGAACTGGCGGGCGTTGATGGGCTGCAGATCCTCACTTTGCGCC
GGATTTATGTTCAGCTGAGCGGCCAGCTGATCCATGCTGTTGGGCTCCCG
TTGTTGGCGCTCCCGCTGGTCGGCACTCTTCGCATAGATATTATCGCCGG
CTGACTCAACGTATTCCGCGTAGTAATCTTGATCCACGTCCCTGATGAAA
CTACCGTCCATGGCCTGAAAGCCCATGCGAATCAAAAGCGATATCTTTGT
GTTAAAGCACTGCAGCCAGGCCCGATTCGTCTGGTAGATGGACAGCTGCG
CATCCTCACCGCTGGCATTCCAAAAGTCCAGCAGCGTGTTTTTCGTGAAG
TCAATCAGCATATGCCGTTTGGCATCCGGATACAACCTGTTGATCGCCTC
CAAGTGCCGAAATGTAATCTCCAGCAGATGGTGCTGATGGCGGGAAACGA
AAAGCTGCCACTTGTAGACCATAGTCATCAGATTCCACAGCTTGGACATC
GACTGCTCGTCGAGTCGCATCAAGGAGCAGGTGGCAATGTCGTTCAGCAT
AAACTTGCAATGCTCGGCGGTCAAAAGCTGCGCACTATTGTGTTTCGATC
CGTTTAGGAGCGAGTCTATAAACTTTGGTTCGAGC
BO18590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13178-PA | 909 | CG13178-RA | 90..906 | 835..19 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 208..1024 | 835..19 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143353..12144169 | 19..835 | 4085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:44:42 has no hits.
BO18590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:09 Download gff for
BO18590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-PA | 90..909 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:27 Download gff for
BO18590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 189..1011 | 13..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:00 Download gff for
BO18590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 208..1030 | 13..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:00 Download gff for
BO18590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143347..12144169 | 13..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:27 Download gff for
BO18590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030852..8031674 | 13..835 | 99 | | Plus |
BO18590.5prime Sequence
784 bp (747 high quality bases) assembled on 2006-10-13
> BO18590.5prime
GAAGTTATCAGTCGACATGCTCTACGTGATCGATCAGCGGCTGAAGGCGC
AGCAGATTGCTCAGGACAAATCGGTCCAGGTTATCCACGATGTGACTTCT
GTGCTGCTCGAACCAAAGTTTATAGACTCGCTCCTAAACGGATCGAAACA
CAATAGTGCGCAGCTTTTGACCGCCGAGCATTGCAAGTTTATGCTGAACG
ACATTGCCACCTGCTCCTTGATGCGACTCGACGAGCAGTCGATGTCCAAG
CTGTGGAATCTGATGACTATGGTCTACAAGTGGCAGCTTTTCGTTTCCCG
CCATCAGCACCATCTGCTGGAGATTACATTTCGGCACTTGGAGGCGATCA
ACAGGTTGTATCCGGATGCCAAACGGCATATGCTGATTGACTTCACGAAA
AACACGCTGCTGGACTTTTGGAATGCCAGCGGTGAGGATGCGCAGCTGTC
CATCTACCAGACGAATCGGGCCTGGCTGCAGTGCTTTAACACAAAGATAT
CGCTTTTGATTCGCATGGGCTTTCAGGCCATGGACGGTAGTTTCATCAGG
GACGTGGATCAAGATTACTACGCGGAATACGTTGAGTCAGCCGGCGATAA
TATCTATGCGAAGAGTGCCGACCAGCGGGAGCGCCAACAACGGGAGCCCA
ACAGCATGGATCAGCTGGCCGCTCAGCTGAACATAAATCCCGGCGCAAGT
GAGGATCTGCAGCCCATCAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCA
GGCCTTCGGGCATGTGCTTTTCAATGACACAGCG
BO18590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13178-PA | 909 | CG13178-RA | 1..674 | 17..690 | 3370 | 100 | Plus |
| CG13178-PA | 909 | CG13178-RA | 681..768 | 697..784 | 390 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..886 | 13..784 | 3770 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143491..12144195 | 784..80 | 3420 | 99 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:49:24 has no hits.
BO18590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:09 Download gff for
BO18590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:05 Download gff for
BO18590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 96..867 | 13..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:47 Download gff for
BO18590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 115..886 | 13..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:47 Download gff for
BO18590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143491..12144194 | 81..784 | 99 | <- | Minus |
| 2R | 12144371..12144434 | 17..80 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:05 Download gff for
BO18590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030996..8031699 | 81..784 | 99 | <- | Minus |
| arm_2R | 8031876..8031939 | 17..80 | 100 | <- | Minus |
BO18590.complete Sequence
940 bp assembled on 2006-10-11
GenBank Submission: FJ634485
> BO18590.complete
GAAGTTATCAGTCGACATGCTCTACGTGATCGATCAGCGGCTGAAGGCGC
AGCAGATTGCTCAGGACAAATCGGTCCAGGTTATCCACGATGTGACTTCT
GTGCTGCTCGAACCAAAGTTTATAGACTCGCTCCTAAACGGATCGAAACA
CAATAGTGCGCAGCTTTTGACCGCCGAGCATTGCAAGTTTATGCTGAACG
ACATTGCCACCTGCTCCTTGATGCGACTCGACGAGCAGTCGATGTCCAAG
CTGTGGAATCTGATGACTATGGTCTACAAGTGGCAGCTTTTCGTTTCCCG
CCATCAGCACCATCTGCTGGAGATTACATTTCGGCACTTGGAGGCGATCA
ACAGGTTGTATCCGGATGCCAAACGGCATATGCTGATTGACTTCACGAAA
AACACGCTGCTGGACTTTTGGAATGCCAGCGGTGAGGATGCGCAGCTGTC
CATCTACCAGACGAATCGGGCCTGGCTGCAGTGCTTTAACACAAAGATAT
CGCTTTTGATTCGCATGGGCTTTCAGGCCATGGACGGTAGTTTCATCAGG
GACGTGGATCAAGATTACTACGCGGAATACGTTGAGTCAGCCGGCGATAA
TATCTATGCGAAGAGTGCCGACCAGCGGGAGCGCCAACAACGGGAGCCCA
ACAGCATGGATCAGCTGGCCGCTCAGCTGAACATAAATCCGGCGCAAAGT
GAGGATCTGCAGCCCATCAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCA
GGCCTTCGGCAATGTGCTTTTCAATGACACAGCGGCCAGCTCCTCTGGCT
GCGAGTTTGTACAGCTGCAGCCCACGACATCGGCATCGTCCTCGGAAAAG
GTGGCGACGTCCATGTCCCGGGGAGGATCCTTGCTGAACCAGAACCTGCT
GGACCTGTACAGCAAAATGCCTGCAAGCTTTCTAGACCAT
BO18590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 909 | CG13178-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..1024 | 13..922 | 4535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143353..12144195 | 922..80 | 4215 | 100 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:23:12 has no hits.
BO18590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:42 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:11 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:29 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 100..1005 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:42 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:27 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 119..1024 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:27 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143350..12144194 | 81..924 | 99 | <- | Minus |
| 2R | 12144371..12144434 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:29 Download gff for
BO18590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030855..8031699 | 81..924 | 99 | <- | Minus |
| arm_2R | 8031876..8031939 | 17..80 | 100 | | Minus |
BO18590.pep Sequence
Translation from 16 to 940
> BO18590.pep
MLYVIDQRLKAQQIAQDKSVQVIHDVTSVLLEPKFIDSLLNGSKHNSAQL
LTAEHCKFMLNDIATCSLMRLDEQSMSKLWNLMTMVYKWQLFVSRHQHHL
LEITFRHLEAINRLYPDAKRHMLIDFTKNTLLDFWNASGEDAQLSIYQTN
RAWLQCFNTKISLLIRMGFQAMDGSFIRDVDQDYYAEYVESAGDNIYAKS
ADQRERQQREPNSMDQLAAQLNINPAQSEDLQPINARQFQQQFEQAFGNV
LFNDTAASSSGCEFVQLQPTTSASSSEKVATSMSRGGSLLNQNLLDLYSK
MPASFLDH
BO18590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-PA | 302 | CG13178-PA | 1..302 | 1..302 | 1553 | 100 | Plus |
