Clone BO18594 Report

Search the DGRC for BO18594

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:185
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG17855-RA
Protein status:BO18594.pep: validated full length
Sequenced Size:910

Clone Sequence Records

BO18594.3prime Sequence

812 bp (690 high quality bases) assembled on 2006-10-13

> BO18594.3prime
ATGGTCTAGAAAGCTTGCATCAACAGGCTCGCTTTCTTTCTCCAACTTGG
CGCGAATTGTTCTTTGACAGCGGGATCTCAACAATTCCCGTCTTAGGGCA
TTGCTCTCTGTTTCCACAGTTTGTATGAGGCTATGGGTTAAAGCAGCTCT
TTCCATAGTTTCTGCGTCGGCATCATCATCCTTGGGGTCAGATTCACTGC
TAGAGGAGCAGCGCCGGGCCTGCATAGCTTTATGATGCTGTCCGGGATAG
TCTTCCTCATATTTGGGCGGTGGGTCGTCATCGTTGGGTAGCGAGGCCGG
CAGACTGGTCGCTCCTTCTTCTGATTTTGCCTTAAAAGCGGCTAATTCGT
CCCGCAAGGATTGGTTTTGCATTTCCAGTAATTCCACGCTCTCAAGTTCA
AAATCCATTTCGTCAATAATGTCGTATGACTCATCAAGGGCTCTTTGAAG
TTTTTCTACTTTGGCCTTCAGCTCGTTCAATTCGTTGACATCGCTTTGGG
CCGACTGCCTTTTCTCCATAGCCATTCGTTGCTCTGCATTTCTTTGATCT
AAAGAGGACTTCATTACCAAGCCTGTAAGCGTCTTCTGCCGTTTAAACAT
CTCCTCCAAAGCACGACAACGTTTCACTTTCTCCAGATAAGCGTCATGCA
GTTTGTTGTACTTCTTCTTGTGCTTCTGCAGTGTTTCCACCAGACGATCT
CGTTCCTCCTCCAATTGGAAGACCATGATCTTGGCCTCCACATTTATGGC
CGCATTGGTGCTGTGGCTGGCAGATGCGCGATTTAATCAATGGCGCAACA
AAATGTTTTCCT

BO18594.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 879 CG17855-RA 83..876 812..19 3895 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 204..997 812..19 3925 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9540780..9541058 812..534 1350 98.9 Minus
2L 23513712 2L 9541318..9541575 387..130 1290 100 Minus
2L 23513712 2L 9541116..9541265 535..386 750 100 Minus
2L 23513712 2L 9541634..9541744 129..19 555 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:19:05 has no hits.

BO18594.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:14 Download gff for BO18594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-PA 83..879 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:53 Download gff for BO18594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 204..997 19..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:10 Download gff for BO18594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 204..997 19..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:10 Download gff for BO18594.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9541634..9541744 19..129 100   Minus
2L 9540780..9541058 534..812 98 -> Minus
2L 9541118..9541263 388..533 100 -> Minus
2L 9541318..9541575 130..387 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:53 Download gff for BO18594.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9540780..9541058 534..812 98 -> Minus
arm_2L 9541118..9541263 388..533 100 -> Minus
arm_2L 9541318..9541575 130..387 100 -> Minus
arm_2L 9541634..9541744 19..129 100   Minus

BO18594.5prime Sequence

757 bp (746 high quality bases) assembled on 2006-10-13

> BO18594.5prime
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATG

BO18594.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 879 CG17855-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 122..862 17..757 3705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9540748..9541058 67..377 1540 99.7 Plus
2L 23513712 2L 9541318..9541551 524..757 1170 100 Plus
2L 23513712 2L 9541116..9541265 376..525 750 100 Plus
2L 23513712 2L 9540644..9540698 17..71 275 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:02:52 has no hits.

BO18594.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:14 Download gff for BO18594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:21 Download gff for BO18594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..862 17..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:45 Download gff for BO18594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..862 17..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:45 Download gff for BO18594.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9540644..9540698 17..71 100 -> Plus
2L 9540753..9541058 72..377 100 -> Plus
2L 9541118..9541263 378..523 100 -> Plus
2L 9541318..9541551 524..757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:21 Download gff for BO18594.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9541318..9541551 524..757 100   Plus
arm_2L 9540644..9540698 17..71 100 -> Plus
arm_2L 9540753..9541058 72..377 100 -> Plus
arm_2L 9541118..9541263 378..523 100 -> Plus

BO18594.complete Sequence

910 bp assembled on 2006-10-11

GenBank Submission: FJ634486

> BO18594.complete
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAGAAAGAAAGCGAGCCTGTTGATGCAAGCTT
TCTAGACCAT

BO18594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 879 CG17855-PA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 122..997 17..892 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9540748..9541058 67..377 1540 99.7 Plus
2L 23513712 2L 9541318..9541575 524..781 1290 100 Plus
2L 23513712 2L 9541116..9541265 376..525 750 100 Plus
2L 23513712 2L 9541634..9541744 782..892 555 100 Plus
2L 23513712 2L 9540644..9540698 17..71 275 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:37:42 has no hits.

BO18594.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:43 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:13 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:28 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..997 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:43 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:45 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..997 17..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:45 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9540753..9541058 72..377 100 -> Plus
2L 9541118..9541263 378..523 100 -> Plus
2L 9540644..9540698 17..71 100 -> Plus
2L 9541318..9541575 524..781 100 -> Plus
2L 9541634..9541744 782..894 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:28 Download gff for BO18594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9540644..9540698 17..71 100 -> Plus
arm_2L 9540753..9541058 72..377 100 -> Plus
arm_2L 9541118..9541263 378..523 100 -> Plus
arm_2L 9541318..9541575 524..781 100 -> Plus
arm_2L 9541634..9541744 782..894 98   Plus

BO18594.pep Sequence

Translation from 16 to 910

> BO18594.pep
MEKRATSTMQVLYAELAAAKSRSAELEEENILLRHRLNRASASHSTNAAI
NVEAKIMVFQLEEERDRLVETLQKHKKKYNKLHDAYLEKVKRCRALEEMF
KRQKTLTGLVMKSSLDQRNAEQRMAMEKRQSAQSDVNELNELKAKVEKLQ
RALDESYDIIDEMDFELESVELLEMQNQSLRDELAAFKAKSEEGATSLPA
SLPNDDDPPPKYEEDYPGQHHKAMQARRCSSSSESDPKDDDADAETMERA
ALTHSLIQTVETESNALRRELLRSRCQRTIRAKLEKESEPVDASFLDH

BO18594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 292 CG17855-PA 1..292 1..292 1452 100 Plus