Clone Sequence Records
BO18594.3prime Sequence
812 bp (690 high quality bases) assembled on 2006-10-13
> BO18594.3prime
ATGGTCTAGAAAGCTTGCATCAACAGGCTCGCTTTCTTTCTCCAACTTGG
CGCGAATTGTTCTTTGACAGCGGGATCTCAACAATTCCCGTCTTAGGGCA
TTGCTCTCTGTTTCCACAGTTTGTATGAGGCTATGGGTTAAAGCAGCTCT
TTCCATAGTTTCTGCGTCGGCATCATCATCCTTGGGGTCAGATTCACTGC
TAGAGGAGCAGCGCCGGGCCTGCATAGCTTTATGATGCTGTCCGGGATAG
TCTTCCTCATATTTGGGCGGTGGGTCGTCATCGTTGGGTAGCGAGGCCGG
CAGACTGGTCGCTCCTTCTTCTGATTTTGCCTTAAAAGCGGCTAATTCGT
CCCGCAAGGATTGGTTTTGCATTTCCAGTAATTCCACGCTCTCAAGTTCA
AAATCCATTTCGTCAATAATGTCGTATGACTCATCAAGGGCTCTTTGAAG
TTTTTCTACTTTGGCCTTCAGCTCGTTCAATTCGTTGACATCGCTTTGGG
CCGACTGCCTTTTCTCCATAGCCATTCGTTGCTCTGCATTTCTTTGATCT
AAAGAGGACTTCATTACCAAGCCTGTAAGCGTCTTCTGCCGTTTAAACAT
CTCCTCCAAAGCACGACAACGTTTCACTTTCTCCAGATAAGCGTCATGCA
GTTTGTTGTACTTCTTCTTGTGCTTCTGCAGTGTTTCCACCAGACGATCT
CGTTCCTCCTCCAATTGGAAGACCATGATCTTGGCCTCCACATTTATGGC
CGCATTGGTGCTGTGGCTGGCAGATGCGCGATTTAATCAATGGCGCAACA
AAATGTTTTCCT
BO18594.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 879 | CG17855-RA | 83..876 | 812..19 | 3895 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 204..997 | 812..19 | 3925 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9540780..9541058 | 812..534 | 1350 | 98.9 | Minus |
2L | 23513712 | 2L | 9541318..9541575 | 387..130 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 9541116..9541265 | 535..386 | 750 | 100 | Minus |
2L | 23513712 | 2L | 9541634..9541744 | 129..19 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:19:05 has no hits.
BO18594.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:14 Download gff for
BO18594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-PA | 83..879 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:53 Download gff for
BO18594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 204..997 | 19..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:10 Download gff for
BO18594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 204..997 | 19..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:10 Download gff for
BO18594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9541634..9541744 | 19..129 | 100 | | Minus |
2L | 9540780..9541058 | 534..812 | 98 | -> | Minus |
2L | 9541118..9541263 | 388..533 | 100 | -> | Minus |
2L | 9541318..9541575 | 130..387 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:53 Download gff for
BO18594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9540780..9541058 | 534..812 | 98 | -> | Minus |
arm_2L | 9541118..9541263 | 388..533 | 100 | -> | Minus |
arm_2L | 9541318..9541575 | 130..387 | 100 | -> | Minus |
arm_2L | 9541634..9541744 | 19..129 | 100 | | Minus |
BO18594.5prime Sequence
757 bp (746 high quality bases) assembled on 2006-10-13
> BO18594.5prime
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATG
BO18594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 879 | CG17855-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 122..862 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9540748..9541058 | 67..377 | 1540 | 99.7 | Plus |
2L | 23513712 | 2L | 9541318..9541551 | 524..757 | 1170 | 100 | Plus |
2L | 23513712 | 2L | 9541116..9541265 | 376..525 | 750 | 100 | Plus |
2L | 23513712 | 2L | 9540644..9540698 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:02:52 has no hits.
BO18594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:14 Download gff for
BO18594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:21 Download gff for
BO18594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..862 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:45 Download gff for
BO18594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..862 | 17..757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:45 Download gff for
BO18594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
2L | 9541318..9541551 | 524..757 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:21 Download gff for
BO18594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9541318..9541551 | 524..757 | 100 | | Plus |
arm_2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
arm_2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
arm_2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
BO18594.complete Sequence
910 bp assembled on 2006-10-11
GenBank Submission: FJ634486
> BO18594.complete
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAGAAAGAAAGCGAGCCTGTTGATGCAAGCTT
TCTAGACCAT
BO18594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 879 | CG17855-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 122..997 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9540748..9541058 | 67..377 | 1540 | 99.7 | Plus |
2L | 23513712 | 2L | 9541318..9541575 | 524..781 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 9541116..9541265 | 376..525 | 750 | 100 | Plus |
2L | 23513712 | 2L | 9541634..9541744 | 782..892 | 555 | 100 | Plus |
2L | 23513712 | 2L | 9540644..9540698 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:37:42 has no hits.
BO18594.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:43 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:13 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:28 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..997 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:43 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:45 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..997 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:45 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
2L | 9541634..9541744 | 782..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:28 Download gff for
BO18594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
arm_2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
arm_2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
arm_2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
arm_2L | 9541634..9541744 | 782..894 | 98 | | Plus |
BO18594.pep Sequence
Translation from 16 to 910
> BO18594.pep
MEKRATSTMQVLYAELAAAKSRSAELEEENILLRHRLNRASASHSTNAAI
NVEAKIMVFQLEEERDRLVETLQKHKKKYNKLHDAYLEKVKRCRALEEMF
KRQKTLTGLVMKSSLDQRNAEQRMAMEKRQSAQSDVNELNELKAKVEKLQ
RALDESYDIIDEMDFELESVELLEMQNQSLRDELAAFKAKSEEGATSLPA
SLPNDDDPPPKYEEDYPGQHHKAMQARRCSSSSESDPKDDDADAETMERA
ALTHSLIQTVETESNALRRELLRSRCQRTIRAKLEKESEPVDASFLDH
BO18594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 292 | CG17855-PA | 1..292 | 1..292 | 1452 | 100 | Plus |