Clone Sequence Records
BO18595.3prime Sequence
840 bp (695 high quality bases) assembled on 2006-10-13
> BO18595.3prime
ATGGTCTAGAAAGCTTGCATTGTACTTCTCCCCTCCCAGGGAGCAAATTC
CGAAATGGAGCCTCAGTTGCTCGTACAAAACAAATAGCAAAGTGGTGGCC
GGTGCTTTTCGCACTATAGTTGGCACAAATCCTCGATAGGGTCCCATTAC
GCCAAAGCGCATCATGTGAACAGACGCTTGGAAGACTGTGCGAAATTCGC
CGGGTCTGGAGTTCATCATAATGGTCCTTACCACGTCCAGGGGATGAGTG
ATCGCAGACGAAATGATCGATGTACCCAGCGAAGTGAGAAAGTGCAAGGG
CAATCCGTCATTCACAGAGATATTTTTCCTCACTTCCGTTTTAATAATAT
CGTAGAAAGCTATCTGGCTGCAAGTGCTTAGCGATGATTTGAAGACCGCT
ACCGATCCACCTTTGTAAAGTGCCTTCCAGCCCTCCTCCTTGGGAATTCG
AATGAGTCCATCGAAGACATGCTTATAGTTGCGTCGCTTGTACGGCGGCT
CCTTCATATCGGTTTGCATCCGCACGTTAATCAGATCCGTTGGTATACCA
AACGCAGAACCGCAAGCTCCAGCCACGCAGCCCAAAATAATCTTTCCCAG
ATATGAATCCCTATCGACGTACTCCATTTTCTTGCCAGTATCATACACTA
TGAAATGGATATTGGTGCTGGTCATTTGTCTCAGGATGGCAGCCGAGAAA
CCATCGTAGAAGCCCAAGTATCCTTTTAAAGAGTGTATTCTTTTGACCGT
GCCTAAAATTGAACGCTTTTGCCTTTGGATCTGCATGTGAGTTTTCACGA
TATCAATGGGCGCCACTGCGAAAGCAACGCACATCGAGGC
BO18595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18363-PA | 909 | CG18363-RA | 85..906 | 840..19 | 4060 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 226..1047 | 840..19 | 4080 | 99.8 | Minus |
Dic4-RA | 1144 | CG18363-RA | 226..1047 | 840..19 | 4080 | 99.8 | Minus |
Dic4-RB | 1140 | CG18363-RB | 226..1043 | 840..19 | 4010 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697166..18697492 | 19..345 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 18697760..18698009 | 475..724 | 1220 | 99.2 | Plus |
3L | 28110227 | 3L | 18697567..18697699 | 346..478 | 665 | 100 | Plus |
3L | 28110227 | 3L | 18698069..18698187 | 722..840 | 580 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:44 has no hits.
BO18595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:14 Download gff for
BO18595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-PA | 85..909 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:46 Download gff for
BO18595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 226..1051 | 14..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:54 Download gff for
BO18595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 226..1051 | 14..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:54 Download gff for
BO18595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18697162..18697492 | 14..345 | 99 | <- | Plus |
3L | 18697567..18697699 | 346..478 | 100 | <- | Plus |
3L | 18697764..18698007 | 479..722 | 99 | <- | Plus |
3L | 18698070..18698187 | 723..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:46 Download gff for
BO18595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18690262..18690592 | 14..345 | 99 | <- | Plus |
arm_3L | 18690667..18690799 | 346..478 | 100 | <- | Plus |
arm_3L | 18690864..18691107 | 479..722 | 99 | <- | Plus |
arm_3L | 18691170..18691287 | 723..840 | 99 | | Plus |
BO18595.5prime Sequence
844 bp (770 high quality bases) assembled on 2006-10-13
> BO18595.5prime
GAAGTTATCAGTCGACATGCCGGTTTTTGATGACCACTTCCTTGGCGACT
GCCATGATGAGCCCGAAGGACTTTTGCCGCGTTGGTGGTTCGGTGGCTTT
GCCTCGATGTGCGTTGCCTTCGCAGTGGCGCCCATTGATATCGTGAAAAC
TCACATGCAGATCCAAAGGCAAAAGCGTTCAATTTTAGGCACGGTCAAAA
GAATACACTCTTTAAAAGGATACTTGGGCTTCTACGATGGCTTCTCGGCT
GCCATCCTGAGACAAATGACCAGCACCAATATCCATTTCATAGTGTATGA
TACTGGCAAGAAAATGGAGTACGTCGATAGGGATTCATATCTGGGAAAGA
TTATTTTGGGCTGCGTGGCTGGAGCTTGCGGTTCTGCGTTTGGTATACCA
ACGGATCTGATTAACGTGCGGATGCAAACCGATATGAAGGAGCCGCCGTA
CAAGCGACGCAACTATAAGCATGTCTTCGATGGACTCATTCGAATTCCCA
AGGAGGAGGGCTGGAAGGCACTTTACAAAGGTGGATCGGTAGCGGTCTTC
AAATCATCGCTAAGCACTTGCAGCCAGATAGCTTTCTACGATATTATTAA
AACGGAAGTGAGGAAAAATATCTCTGTGAATGACGGATTGCCCTTGCACT
TTCTCACTTCGCTGGGTACATCGATCATTTCGTCTGCGATCACTCATCCC
CTGGACGTGGTAAGGACCATTATGATGAACTCCAGACCCGGCGAATTTCG
CACAGTCTTCCAAGCGTCTGTTCACATGATGCGCTTTGGCGTAATGGGAC
CCTATCGAGGATTTGTGCCAACTATAGTGCGAAAAGCACCGGCC
BO18595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18363-PA | 909 | CG18363-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 142..969 | 17..844 | 4140 | 100 | Plus |
Dic4-RA | 1144 | CG18363-RA | 142..969 | 17..844 | 4140 | 100 | Plus |
Dic4-RB | 1140 | CG18363-RB | 142..965 | 17..844 | 4070 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697244..18697492 | 844..596 | 1245 | 100 | Minus |
3L | 28110227 | 3L | 18697760..18698009 | 466..217 | 1235 | 99.6 | Minus |
3L | 28110227 | 3L | 18698069..18698271 | 219..17 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 18697567..18697699 | 595..463 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:03:35 has no hits.
BO18595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:25:15 Download gff for
BO18595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:25 Download gff for
BO18595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 138..969 | 10..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:47 Download gff for
BO18595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 138..969 | 10..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:47 Download gff for
BO18595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18697244..18697492 | 596..844 | 100 | <- | Minus |
3L | 18697567..18697699 | 463..595 | 100 | <- | Minus |
3L | 18697764..18698007 | 219..462 | 100 | <- | Minus |
3L | 18698070..18698275 | 10..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:25 Download gff for
BO18595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18691170..18691375 | 10..218 | 98 | | Minus |
arm_3L | 18690344..18690592 | 596..844 | 100 | <- | Minus |
arm_3L | 18690667..18690799 | 463..595 | 100 | <- | Minus |
arm_3L | 18690864..18691107 | 219..462 | 100 | <- | Minus |
BO18595.complete Sequence
940 bp assembled on 2006-10-11
GenBank Submission: FJ634487
> BO18595.complete
GAAGTTATCAGTCGACATGCCGGTTTTTGATGACCACTTCCTTGGCGACT
GCCATGATGAGCCCGAAGGACTTTTGCCGCGTTGGTGGTTCGGTGGCTTT
GCCTCGATGTGCGTTGCCTTCGCAGTGGCGCCCATTGATATCGTGAAAAC
TCACATGCAGATCCAAAGGCAAAAGCGTTCAATTTTAGGCACGGTCAAAA
GAATACACTCTTTAAAAGGATACTTGGGCTTCTACGATGGCTTCTCGGCT
GCCATCCTGAGACAAATGACCAGCACCAATATCCATTTCATAGTGTATGA
TACTGGCAAGAAAATGGAGTACGTCGATAGGGATTCATATCTGGGAAAGA
TTATTTTGGGCTGCGTGGCTGGAGCTTGCGGTTCTGCGTTTGGTATACCA
ACGGATCTGATTAACGTGCGGATGCAAACCGATATGAAGGAGCCGCCGTA
CAAGCGACGCAACTATAAGCATGTCTTCGATGGACTCATTCGAATTCCCA
AGGAGGAGGGCTGGAAGGCACTTTACAAAGGTGGATCGGTAGCGGTCTTC
AAATCATCGCTAAGCACTTGCAGCCAGATAGCTTTCTACGATATTATTAA
AACGGAAGTGAGGAAAAATATCTCTGTGAATGACGGATTGCCCTTGCACT
TTCTCACTTCGCTGGGTACATCGATCATTTCGTCTGCGATCACTCATCCC
CTGGACGTGGTAAGGACCATTATGATGAACTCCAGACCCGGCGAATTTCG
CACAGTCTTCCAAGCGTCTGTTCACATGATGCGCTTTGGCGTAATGGGAC
CCTATCGAGGATTTGTGCCAACTATAGTGCGAAAAGCACCGGCCACCACT
TTGCTATTTGTTTTGTACGAGCAACTGAGGCTCCATTTCGGAATTTGCTC
CCTGGGAGGGGAGAAGTACAATGCAAGCTTTCTAGACCAT
BO18595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 909 | CG18363-PC | 1..906 | 17..922 | 4530 | 100 | Plus |
Dic4-RA | 909 | CG18363-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Dic4-RB | 522 | CG18363-PB | 1..522 | 17..542 | 2535 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 142..1047 | 17..922 | 4530 | 100 | Plus |
Dic4-RA | 1144 | CG18363-RA | 142..1047 | 17..922 | 4530 | 100 | Plus |
Dic4-RB | 1140 | CG18363-RB | 142..1043 | 17..922 | 4435 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697166..18697492 | 922..596 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 18697760..18698009 | 466..217 | 1235 | 99.6 | Minus |
3L | 28110227 | 3L | 18698069..18698271 | 219..17 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 18697567..18697699 | 595..463 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:08 has no hits.
BO18595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:44 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:14 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 138..1051 | 10..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:07 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 142..1047 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:44 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 138..1051 | 10..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:19 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 142..1047 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:19 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18697764..18698007 | 219..462 | 100 | <- | Minus |
3L | 18698070..18698271 | 17..218 | 100 | | Minus |
3L | 18697164..18697492 | 596..924 | 99 | <- | Minus |
3L | 18697567..18697699 | 463..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:07 Download gff for
BO18595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18690667..18690799 | 463..595 | 100 | <- | Minus |
arm_3L | 18690264..18690592 | 596..924 | 99 | <- | Minus |
arm_3L | 18690864..18691107 | 219..462 | 100 | <- | Minus |
arm_3L | 18691170..18691371 | 17..218 | 100 | | Minus |
BO18595.pep Sequence
Translation from 16 to 940
> BO18595.pep
MPVFDDHFLGDCHDEPEGLLPRWWFGGFASMCVAFAVAPIDIVKTHMQIQ
RQKRSILGTVKRIHSLKGYLGFYDGFSAAILRQMTSTNIHFIVYDTGKKM
EYVDRDSYLGKIILGCVAGACGSAFGIPTDLINVRMQTDMKEPPYKRRNY
KHVFDGLIRIPKEEGWKALYKGGSVAVFKSSLSTCSQIAFYDIIKTEVRK
NISVNDGLPLHFLTSLGTSIISSAITHPLDVVRTIMMNSRPGEFRTVFQA
SVHMMRFGVMGPYRGFVPTIVRKAPATTLLFVLYEQLRLHFGICSLGGEK
YNASFLDH
BO18595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-PC | 302 | CG18363-PC | 1..302 | 1..302 | 1596 | 100 | Plus |
Dic4-PA | 302 | CG18363-PA | 1..302 | 1..302 | 1596 | 100 | Plus |
Dic4-PB | 173 | CG18363-PB | 1..147 | 1..147 | 793 | 100 | Plus |
Dic3-PA | 287 | CG11196-PA | 9..281 | 20..292 | 588 | 42.9 | Plus |
Dic1-PC | 280 | CG8790-PC | 10..277 | 23..292 | 576 | 41.9 | Plus |