Clone BO18613 Report

Search the DGRC for BO18613

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:186
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG1943-RA
Protein status:BO18613.pep: Inserted from web
Sequenced Size:388

Clone Sequence Records

BO18613.complete Sequence

388 bp assembled on 2009-05-14

GenBank Submission: KX797560

> BO18613.complete
GAAGTTATCAGTCGACATGACATCCACCGAGCTGAAAATCGGCCTGACCA
CCAGTGCCCGTCCCTCCAGCCGAGTGCTGAAGCCCCCAGGCGGCGGACAC
ACCAATATCTTCTCGGAGCCCGACGTGGCCGTTCCCGCCCCGCGTGCCAA
GTACAACCAACAGAACTCCTCAAACCTCAATGCCTGCATGGGCTCCACGG
ATCCCAACAAGGTGGTGGAGAAAATTCGCGAAGAGGTCTCCATCCAGAAG
GAGGAGGCCAAGTCCGCCCCACCCAGCCAGCCCAAGGAGCCGGCGAACAA
ACCAGCGGCCACAAATGGAGAGGCACGCGGCCGAGTTCCACCCGGCGGAT
TCTCGTCGGGCGGATTCTGGGCAAGCTTTCTAGACCAT

BO18613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1943-RD 357 CG1943-PD 1..354 17..370 1770 100 Plus
CG1943-RC 357 CG1943-PC 1..354 17..370 1770 100 Plus
CG1943-RB 357 CG1943-PB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1943-RD 1207 CG1943-RD 145..498 17..370 1770 100 Plus
CG1943-RC 985 CG1943-RC 113..466 17..370 1770 100 Plus
CG1943-RB 991 CG1943-RB 119..472 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7076919..7077272 17..370 1770 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:30:17 has no hits.

BO18613.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:41:00 Download gff for BO18613.complete
Subject Subject Range Query Range Percent Splice Strand
CG1943-RA 167..520 17..372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:18 Download gff for BO18613.complete
Subject Subject Range Query Range Percent Splice Strand
CG1943-RB 119..472 17..372 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:59 Download gff for BO18613.complete
Subject Subject Range Query Range Percent Splice Strand
CG1943-RB 119..472 17..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:59 Download gff for BO18613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7076919..7077272 17..372 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:18 Download gff for BO18613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2902641..2902994 17..372 99   Plus

BO18613.pep Sequence

Translation from 16 to 388

> BO18613.pep
MTSTELKIGLTTSARPSSRVLKPPGGGHTNIFSEPDVAVPAPRAKYNQQN
SSNLNACMGSTDPNKVVEKIREEVSIQKEEAKSAPPSQPKEPANKPAATN
GEARGRVPPGGFSSGGFWASFLDH

BO18613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1943-PD 118 CG1943-PD 1..118 1..118 618 100 Plus
CG1943-PC 118 CG1943-PC 1..118 1..118 618 100 Plus
CG1943-PB 118 CG1943-PB 1..118 1..118 618 100 Plus
CG1943-PA 118 CG1943-PA 1..118 1..118 618 100 Plus