Clone BO18616 Report

Search the DGRC for BO18616

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:186
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5708-RA
Protein status:BO18616.pep: Imported from assembly
Sequenced Size:757

Clone Sequence Records

BO18616.complete Sequence

757 bp assembled on 2009-05-13

GenBank Submission: KX796093

> BO18616.complete
GAAGTTATCAGTCGACATGAATGCAACGTTCCATTCATACAGAGACATAC
TAGCGGCACATCACCAAGACTCATCTAGTCCTGAGAACTTCGCCCCCATA
GTAATTGACTATAGAAACTCAAACCACACAAAGGACACTGTGGAGACCAA
CTCGAATATCTCATCGTCTCAGCTATCGTTCATGGACGAATCTTCAAACG
ATTTCAATAATCAGCAGTTAATTCATTCCAACTCCCTTATTAAAGTGTGT
GGTGGTTGTGGAGATAAAATAAGTGATAGATATCTTTTATACGCTTTGGA
CAGATACTGGCACAATGGCTGCCTTAAATGTCACTGCTGTGGAGCTATGC
TAGCAGAAGTGGGTTCCAGCTGTTTTACGAGGCGAGGCCTGATTCTTTGC
AAAAAGGACTATTCCAGCATGTTCGGGTGCTCCGGAGTTTGTTCTGGCTG
CGGAGAAACTATACCGCCAAGTGAACTGGTAGCGAAAGCACTTACTGGAA
TAAATAATATCGATTTACAAAATCAACAAAAACAAATAATTAATTGCGTA
TTTCATCTAAGGTGCTTTAGTTGTGCTAAGTGTGGATCCAGTCTGCGTCC
TGGTGATAGGTATACTATGTTAGGAGCTAGCTTGGTGTGTGAACAAGATT
GGCACAAATTACTTAAGGGCCCCGCCAACTCGAATGGAACGCTTGGACAA
AGGAAAGGAAAGGTCGGTAGGCCCAGAAGATCAAAGGACGCAAGCTTTCT
AGACCAT

BO18616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-RC 726 CG5708-PC 1..723 17..739 3615 100 Plus
CG5708-RB 726 CG5708-PB 1..723 17..739 3615 100 Plus
CG5708-RA 726 CG5708-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-RC 1326 CG5708-RC 298..1020 17..739 3615 100 Plus
CG5708-RB 1036 CG5708-RB 206..928 17..739 3615 100 Plus
CG5708-RA 1128 CG5708-RA 298..1020 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10225500..10225750 267..17 1240 99.6 Minus
2L 23513712 2L 10224954..10225155 613..412 1010 100 Minus
2L 23513712 2L 10225279..10225434 417..262 780 100 Minus
2L 23513712 2L 10224763..10224894 739..608 660 100 Minus
Blast to na_te.dros performed 2014-11-27 16:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 4687..4724 499..536 109 76.3 Plus

BO18616.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:23 Download gff for BO18616.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RB 206..928 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:54 Download gff for BO18616.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 298..1020 17..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:12 Download gff for BO18616.complete
Subject Subject Range Query Range Percent Splice Strand
CG5708-RA 298..1020 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:12 Download gff for BO18616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10224761..10224892 610..741 98 <- Minus
2L 10224958..10225149 418..609 100 <- Minus
2L 10225279..10225432 264..417 100 <- Minus
2L 10225504..10225750 17..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:54 Download gff for BO18616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10225279..10225432 264..417 100 <- Minus
arm_2L 10224761..10224892 610..741 98 <- Minus
arm_2L 10224958..10225149 418..609 100 <- Minus
arm_2L 10225504..10225750 17..263 100   Minus

BO18616.pep Sequence

Translation from 16 to 757

> BO18616.pep
MNATFHSYRDILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISS
SQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYWHN
GCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIP
PSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYT
MLGASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPRRSKDASFLDH

BO18616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5708-PC 241 CG5708-PC 1..241 1..241 1312 100 Plus
CG5708-PB 241 CG5708-PB 1..241 1..241 1312 100 Plus
CG5708-PA 241 CG5708-PA 1..241 1..241 1312 100 Plus
Bx-PC 313 CG44425-PC 52..227 29..229 335 34.8 Plus
Bx-PA 313 CG44425-PA 52..227 29..229 335 34.8 Plus