BO18617.complete Sequence
1039 bp assembled on 2009-05-13
GenBank Submission: KX796753
> BO18617.complete
GAAGTTATCAGTCGACATGTCGAAACTCATCCGTTGGGGAATCGCTTCCG
CCGGCAAGATCAGCGAGGACTTTGTCATCGCCCTCAGCACCCTGCCCTCC
AGCGACCACAAGGTCCAGGCTGTAGCCGCCCGAGCTCTTGATCGCGCCCA
GGAGTTCGCCACCAAGCACGGCATTCCCAAGGCCCTCGGAAGCTACGAGG
AGCTGGCCAAGAGCACCGATGTCGATGTGGTCTACATTGGCACCCTGAAT
CCCCAGCACTACGAGGTCGCCTTGCTGATGCTGAACAATGGCAAGCATGT
TCTCTGCGAGAAGCCGTTGGCCATGAACAAGAAGCAGGTGGAGGGCATCC
TGGCCGCTGCCAAGGCCAACAAGCGCTTCTTCATGGAGGCCGTGTGGTCG
CGATTCTTCCCCTCGTACCAGCGCGTTAAGGAGCTCATCTCCAGCGGACA
GCTGGGCCAAGTCAAGGATGTGGAGGTCAACTTTGGCTTCCCTATGCCTC
ATGTCGACCGCTTGCAGAAACGCGAACTGGGAGGCGGTGTGGTCTACGAT
CTGGGCATTTACACCATCCAGGTCTCGCAGTGGGCCTTCCAGGAGAAACC
GGAGAAGATCGAGTCCAAGGGAACCCTGAACGCCGAGGGCATCGACGATG
ATGTTAGTGCCACCTTGACCTACAGTGGTGGGCGCACTGCTCGCATGCGC
TTCTCCTCCAAGGAGAAGTTGGGAAACACCGCCGTTATCAAGGGCACCAA
AGGACAAGTTACCCTGATTGACTTCTGGTCGCCCAACAAGCTCATCGACA
TCGATGGCCAGGAGAAGGAGTGGCTGCCTCCCAAGGGCAAGTACGCGACC
AACTACGCCAACTCCGAGGCCATGCGCTATGAGGCGGAGGCAGTGCGCCA
GTCCATCATCGCCGGCGAAGTGGAGAACAAGAACGTCACCTACGCCGACA
GTTTGATCTTCGCCGAGATCGAGGACACCATCCGCAAGCAGATCGGTGTG
CTGAACAAGTACGATGAGCAGGCAAGCTTTCTAGACCAT
BO18617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1008 | CG3609-PC | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| CG3609-RB | 1008 | CG3609-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| CG3609-RA | 1008 | CG3609-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1210 | CG3609-RC | 146..1152 | 15..1021 | 5035 | 100 | Plus |
| CG3609-RB | 1099 | CG3609-RB | 35..1041 | 15..1021 | 5035 | 100 | Plus |
| CG3609-RA | 1223 | CG3609-RA | 159..1165 | 15..1021 | 5035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2373133..2373426 | 517..224 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 2372513..2372770 | 1021..764 | 1290 | 100 | Minus |
| 2L | 23513712 | 2L | 2372830..2373076 | 763..517 | 1235 | 100 | Minus |
| 2L | 23513712 | 2L | 2373494..2373703 | 224..15 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:57:13 has no hits.
BO18617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:59 Download gff for
BO18617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 45..1049 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:46 Download gff for
BO18617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 161..1165 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:53 Download gff for
BO18617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 161..1165 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:53 Download gff for
BO18617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2372511..2372770 | 764..1023 | 99 | <- | Minus |
| 2L | 2372830..2373076 | 517..763 | 100 | <- | Minus |
| 2L | 2373134..2373425 | 225..516 | 100 | <- | Minus |
| 2L | 2373494..2373701 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:46 Download gff for
BO18617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2373494..2373701 | 17..224 | 100 | | Minus |
| arm_2L | 2372511..2372770 | 764..1023 | 99 | <- | Minus |
| arm_2L | 2372830..2373076 | 517..763 | 100 | <- | Minus |
| arm_2L | 2373134..2373425 | 225..516 | 100 | <- | Minus |
BO18617.pep Sequence
Translation from 16 to 1039
> BO18617.pep
MSKLIRWGIASAGKISEDFVIALSTLPSSDHKVQAVAARALDRAQEFATK
HGIPKALGSYEELAKSTDVDVVYIGTLNPQHYEVALLMLNNGKHVLCEKP
LAMNKKQVEGILAAAKANKRFFMEAVWSRFFPSYQRVKELISSGQLGQVK
DVEVNFGFPMPHVDRLQKRELGGGVVYDLGIYTIQVSQWAFQEKPEKIES
KGTLNAEGIDDDVSATLTYSGGRTARMRFSSKEKLGNTAVIKGTKGQVTL
IDFWSPNKLIDIDGQEKEWLPPKGKYATNYANSEAMRYEAEAVRQSIIAG
EVENKNVTYADSLIFAEIEDTIRKQIGVLNKYDEQASFLDH
BO18617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-PC | 335 | CG3609-PC | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3609-PB | 335 | CG3609-PB | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3609-PA | 335 | CG3609-PA | 1..335 | 1..335 | 1712 | 100 | Plus |
| CG3597-PA | 335 | CG3597-PA | 7..332 | 5..329 | 670 | 42 | Plus |
| CG3597-PB | 337 | CG3597-PB | 7..334 | 5..329 | 658 | 41.8 | Plus |
