BO18636.complete Sequence
1840 bp assembled on 2010-10-20
GenBank Submission: KX796070
> BO18636.complete
GAAGTTATCAGTCGACATGGAAGTGTTTACCTTTGAGAAATCGTACTTGG
AGCGCCTAAAAGAAGCGGAGGCGGTGCTTTCGTGGGAGGGAGCCGTGATG
CCCGCATCCCAGGTTCGATCCGAGTGGAAATCCTACGTCGAATTAAAAAT
TGAGCCTGCAGGATGGCAGGCAATTTGGAAAATTCCACGCGTTATTTGCG
AGGATCTGAAACTACGCTATCCCACCATTGTTTACGGCTACGTGGAGCAG
GTGATCTTTGACGAGCTCAAGGCGGTATTTGTGGTGACCGCCGTGCAGGA
TAGCGATGTCCACCTGCCGGAGAGTAATGAAGTATCGCTAGTGGAGCTGT
GGCCCACTGTGCAGCAGGAGAACGCAGCTCTAAATGTGGATACCACCGCT
GAATGCATCGATCGTTTGCGGTTCTTCTATACGCATGTGTGGATGCCTTG
GGACAAGGACTACGACGATGATCGCGACTGGGTGCAACAGCATCTGCAGG
CTCGTATCCAACTAGTGTGCGATCTCAGCAAGAACCGACTGCCCCGTCCG
TTGGCCCTGCACATGCGCACCCTGCTCGCCGAAGCCAAATACATTCAGCA
GCGTCTGGACTACTTGGAACTGGATCTCAGTGATGCCGAGAGCGACGACG
AGGCTGTGGAACTCAATGACAGCGTAGCAGAGCCCGCTAGAAAGCAATCT
AAAGCGGGCAGTGCCAATGGCTGTCTCAATGTGTCCAGTCTGCCGGTTAC
AGATCTGATGTGCCTGCACCTGCGCATGGCCATCATAAGGAGCGAGTTCG
AGATCCTTGAAAATCCTGAAATGAGGCGAGCCTACAGCGAGCTACAGTCT
AATAGCCTCAAGCGGCTTCGCTGCTCCTCAGGAAGAACCAGACAATCGGA
GGATCTCTTGGTAGAGCGGAATTCCATAAGCCATGTGGTAACCTTGCCGG
GAAAACTGCAGCAGCAGCTGGAACTGCTAAAGCTGGCCCAGACGCTGGTC
AAGCCGGAATCGAAAGTGCAGCTGTCCAATACGTTGCAGGATGTCCTGAG
CATCTGTCAGAGCAACGATGATATTCTACTTTCGCCCGGCGAGCATACAA
TCAAATTCTTGGAGCACCTCAACGATAATGGCAGCCTAAGGGGACTCACT
CAGCCGGAAGCCATACTAAGTCCTGCTGCAGATCTTTCCCTGCTGCCTGT
GGTGTGCTCGAGCGATGAGGATAGCACCCTGCTGGTCATTGATGGCGACT
ATACCTTGTCGGAATTGGTTTTGGATTGTCGTCATGTCCGTAGAGGGATC
CTGCTGCGCAACGGAACGTTGACCATGCGAGGGTGTCGCTTGCTGGGCGA
TGGGAGCTCCAGCACCCAAGAGGGTATTGTCTGCATGCCAGGCGCCAGCG
TGGAACTCAAAAGTTGCCTAATTGAAAACTTTGCTGTGGGTGTATCGATG
CGACCGAAATCTAGTGCTGAGCTGGGAAGCGTCCAGTTTAAAACATGCAA
GACTGGACTGGAGTTGCTGGAGAAATCCGCTTCGGTTAATCTGCAGGGTA
GCAAGTGCAGTTTTGAAAACTGTGCTTTAGGAATCCTGGCCGATGGTTTC
GTATTGGGAGAGCAAAGAACAGAGAAGGTCCTGGTTCTAAACAAATTCAG
CGAACTTCAGCGTTACAACGAGGACAACTTGCTAGGTAATTGCAGCTTTT
ACAACTGCAAGAAAAATGTGCGAGTTTTTAACGAATCCGGTCAGCTGCTG
GCTCAGCGATCGCATCAACAACTCCTCGAGGACGAACTCGGAGGGGAGAA
CAAGGAAAATATTCAATTGGTCGCAAGCTTTCTAGACCAT
BO18636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nesd-RA | 1809 | CG10722-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| nesd-RB | 1809 | CG10722-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nesd-RA | 2134 | CG10722-RA | 238..2043 | 17..1822 | 9030 | 100 | Plus |
| nesd-RB | 2011 | CG10722-RB | 115..1920 | 17..1822 | 9030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20094437..20095939 | 160..1662 | 7515 | 100 | Plus |
| 2L | 23513712 | 2L | 20096002..20096162 | 1662..1822 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 20094209..20094354 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:12:33 has no hits.
BO18636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:55 Download gff for
BO18636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10722-RA | 246..2051 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:51 Download gff for
BO18636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nesd-RB | 115..1920 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:39 Download gff for
BO18636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nesd-RB | 115..1920 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:39 Download gff for
BO18636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20094209..20094353 | 17..161 | 100 | -> | Plus |
| 2L | 20094439..20095939 | 162..1662 | 100 | -> | Plus |
| 2L | 20096003..20096162 | 1663..1824 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:51 Download gff for
BO18636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20094209..20094353 | 17..161 | 100 | -> | Plus |
| arm_2L | 20094439..20095939 | 162..1662 | 100 | -> | Plus |
| arm_2L | 20096003..20096162 | 1663..1824 | 98 | | Plus |
BO18636.pep Sequence
Translation from 16 to 1840
> BO18636.pep
MEVFTFEKSYLERLKEAEAVLSWEGAVMPASQVRSEWKSYVELKIEPAGW
QAIWKIPRVICEDLKLRYPTIVYGYVEQVIFDELKAVFVVTAVQDSDVHL
PESNEVSLVELWPTVQQENAALNVDTTAECIDRLRFFYTHVWMPWDKDYD
DDRDWVQQHLQARIQLVCDLSKNRLPRPLALHMRTLLAEAKYIQQRLDYL
ELDLSDAESDDEAVELNDSVAEPARKQSKAGSANGCLNVSSLPVTDLMCL
HLRMAIIRSEFEILENPEMRRAYSELQSNSLKRLRCSSGRTRQSEDLLVE
RNSISHVVTLPGKLQQQLELLKLAQTLVKPESKVQLSNTLQDVLSICQSN
DDILLSPGEHTIKFLEHLNDNGSLRGLTQPEAILSPAADLSLLPVVCSSD
EDSTLLVIDGDYTLSELVLDCRHVRRGILLRNGTLTMRGCRLLGDGSSST
QEGIVCMPGASVELKSCLIENFAVGVSMRPKSSAELGSVQFKTCKTGLEL
LEKSASVNLQGSKCSFENCALGILADGFVLGEQRTEKVLVLNKFSELQRY
NEDNLLGNCSFYNCKKNVRVFNESGQLLAQRSHQQLLEDELGGENKENIQ
LVASFLDH
BO18636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nesd-PA | 602 | CG10722-PA | 1..602 | 1..602 | 3082 | 100 | Plus |
| nesd-PB | 602 | CG10722-PB | 1..602 | 1..602 | 3082 | 100 | Plus |
