BO18647.complete Sequence
2473 bp assembled on 2010-10-20
GenBank Submission: KX794037
> BO18647.complete
GAAGTTATCAGTCGACATGGTTCAGAATAAACAGAAAACAGCGAAGCCAC
CAAAGCTGCTAAAAGGCGCAGCCAAGGAGCCTGCACTTTCGAAGGCGGAA
AACTGGCAGAAGGTTAAAATCAAGGGCCACGTGATATCCGACGATGGTGG
CGGCTTCGAGGGATTAATTGGCCTGGAGGTCCTCAAGGACTACGATGCAT
CGCTGGTGAAGTCCTCGCAGAAGAGGACCACATCCCGGAATCCAGACAGA
GAGCGCAAGCTGAAGAAGAAAAAGAGGAAGGTATCGAAGGGCGACGAGGA
GGAATCCAGCGAGAGTTCCAGCGAATCCGAAAGCGAGGATGAAGTGGCGG
TCGCTGCTAGGACCAGTAAAAAAGCCCGCCTGGCCGAGCGTCATGCGCAA
AAAATGCAGAAACTGCGCGAGAAGCGTGAAAAGCGAAAGGAGCTGCGGAA
ACAGAAGAAATCGAAGGGCAAGGAAAACGACAACAGTGAGGAGTCCAGTG
ATGAGCACGCGGCAGATCGTTTCGCATTGCTCAGGCCACCACCATCGGAC
GATGAAGAAGAAGTGGTCAAGGCGGAAGATTCGGCAGACCAACAGGAGTC
GACCGACGAAGAAGCACCCGAATTAGTGCCCATCTCCACAGGCGAAGCCG
AAGATATGTCCGCCTGGAACGGCCTGGGTGTTCCCGCTTCCATTTTGCGT
GCCCTCGGCGAGCAAGGCTTCAAGACGCCCACACAAATCCAGGCACTGAC
GCTGCCGGCTGCAATCCACGGCAAAAAGGACATCCTTGGAGCAGCCGAAA
CGGGCAGCGGAAAAACCCTGGCCTTTGGCATACCCATGCTCGCCGGAATC
ATGGAGCTGAAGCAAAGGAATATTCGCTCTGGCATACGCAAGGCGCCCAA
GGTGAAGGGACAGCAGCCGGAGCCAGCGGCAGATGAGCACGAGCTGACGC
CCCCGCCGGAGGAGCTGGATCATGTTTCCGGTGCCAGTGATGAGGAGAGC
GATGCGGAGGAGCAGGCCCAGCGTGTACAGACTCCTCTGTACGGTCTGGT
TCTCACACCCACCAGGGAGTTGGCCGTGCAGGTCAAGAATCACCTGGTGG
CTGCTGCAAAGTATACAGGCATTCGAGTGGCAGCCATCTTCGGAGGTCTA
GCTGTTGCGAAACAGGAACGAGTACTTCGCCAGTGCCCGGACATCGTGGT
GGCCACACCTGGTCGCCTCTGGGAACTTTACGCCCAGGGCAATCGACATT
TGGGCAAGATCGAGGATGTCAGTTTCCTGGTCATCGACGAAACGGATCGC
ATGGTGGAGAAGGGACACTTCGAAGAGCTGCGCAGTCTACTCAAGGTTCT
CAATTCGGACGAGCAGAAGAAGCATCAGCGCCAAAATTTTGTTTACTCGG
CCACTCTGACGTTGGTCCACGATCTTCCCGATCACATGCAGAAGCGAAAT
GTAGGTAAGCGGCCCAAATTTGTGAAACAGACGGTGGATCAGAAAATTGA
AAGTCTTATTGAGGAGTTGGGCATTTCCCAGCCGAAGATTGTGGATATAA
CCAGTTCGCAGCAAACCGCACAAACATTGACCGAGAGCCGTCTGCTGTGT
CCCATCGATCACAAGGACTATCATCTTTACTACTTTATTCAGCGCCATCC
AGGACGCACCATTGTTTTTTGCAATTCCATCGATTGCGTAAAACGACTGG
CCACGCTCTTCGGCCTGCTGGACTGCAATCCCCTGCCCCTGCATGCCAAC
ATGATCCAGAAGCAGCGTCTGAAGAACCTGGAGCGATTCCGTGACAGCCC
GACAGGTTTGCTGATAGCCACTGACGTGGCTGCTCGTGGCCTGGACATAC
CGAATGTGGAGCATGTGATTCACTACCAAGTGCCGCGCACTAGTGAGAAC
TACGTACACCGATCGGGACGCACTGCACGAGCGAATAAGCATGGCATAAC
AGTCATGTTTATGGAGCCGGGCGAGGTCAAGAGCTATGTGAAGCTGTACA
AAACATTGGAGAGAACTGAGGATCTGCCGCTTTTCCCCATTTTGGAGCGT
TTTATGGGAGCTGTTCGCGAGCGTGTGAATCTGGCGCGAGATCTGGACAA
GGAGGAGCTGAAGCTGAAGCGCGTGCAGAGTGAGCGCGGCTGGATGAAGA
AGCACGCTGAGGAAATGGACATGATCATTGATGGCTACAATGACGAATCT
GGCAGTGACCAGGATGAGGATCCATTTGTGATTGAGCGACGTCGCAATCG
GCTGCGCGTGGAGACAGTTAGAGCGCAGCTCAATGCTCTCCTGGCCCAAC
CCATCTTCCCCAGAGGCTTCAGCTTCAAGTATCCCAACAGCGAGGCGGCC
CAATTAGCCACGAGTCATACTCAAAGTGCCGTGGAGACCATGAAGGCGGC
CATAGAGGACCAGAAGCAGGCCAAAAAAGATCGCAACAAGCGAAAACGGA
ATGCCGCAAGCTTTCTAGACCAT
BO18647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9143-RA | 2442 | CG9143-PA | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9143-RA | 2708 | CG9143-RA | 94..2532 | 17..2455 | 12195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20277397..20278822 | 1442..17 | 7130 | 100 | Minus |
| 2R | 25286936 | 2R | 20276704..20277161 | 2020..1563 | 2275 | 99.8 | Minus |
| 2R | 25286936 | 2R | 20276149..20276404 | 2455..2200 | 1280 | 100 | Minus |
| 2R | 25286936 | 2R | 20276467..20276650 | 2199..2016 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 20277219..20277338 | 1562..1443 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:22 has no hits.
BO18647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:43 Download gff for
BO18647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9143-RA | 175..2613 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:32 Download gff for
BO18647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9143-RA | 94..2532 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:30 Download gff for
BO18647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9143-RA | 94..2532 | 17..2457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:30 Download gff for
BO18647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20276467..20276650 | 2016..2199 | 100 | <- | Minus |
| 2R | 20276147..20276404 | 2200..2457 | 99 | <- | Minus |
| 2R | 20276709..20277161 | 1563..2015 | 100 | <- | Minus |
| 2R | 20277219..20277338 | 1443..1562 | 100 | <- | Minus |
| 2R | 20277397..20278822 | 17..1442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:32 Download gff for
BO18647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16163652..16163909 | 2200..2457 | 99 | <- | Minus |
| arm_2R | 16163972..16164155 | 2016..2199 | 100 | <- | Minus |
| arm_2R | 16164214..16164666 | 1563..2015 | 100 | <- | Minus |
| arm_2R | 16164724..16164843 | 1443..1562 | 100 | <- | Minus |
| arm_2R | 16164902..16166327 | 17..1442 | 100 | | Minus |
BO18647.pep Sequence
Translation from 16 to 2473
> BO18647.pep
MVQNKQKTAKPPKLLKGAAKEPALSKAENWQKVKIKGHVISDDGGGFEGL
IGLEVLKDYDASLVKSSQKRTTSRNPDRERKLKKKKRKVSKGDEEESSES
SSESESEDEVAVAARTSKKARLAERHAQKMQKLREKREKRKELRKQKKSK
GKENDNSEESSDEHAADRFALLRPPPSDDEEEVVKAEDSADQQESTDEEA
PELVPISTGEAEDMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAI
HGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQ
PEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTR
ELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGR
LWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQ
KKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEE
LGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIV
FCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLI
ATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFME
PGEVKSYVKLYKTLERTEDLPLFPILERFMGAVRERVNLARDLDKEELKL
KRVQSERGWMKKHAEEMDMIIDGYNDESGSDQDEDPFVIERRRNRLRVET
VRAQLNALLAQPIFPRGFSFKYPNSEAAQLATSHTQSAVETMKAAIEDQK
QAKKDRNKRKRNAASFLDH
BO18647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9143-PA | 813 | CG9143-PA | 1..813 | 1..813 | 4141 | 100 | Plus |
| CG9253-PA | 507 | CG9253-PA | 14..469 | 177..718 | 540 | 28.3 | Plus |
| Rm62-PH | 575 | CG10279-PH | 144..517 | 222..677 | 393 | 27.8 | Plus |
| Rm62-PD | 575 | CG10279-PD | 144..517 | 222..677 | 393 | 27.8 | Plus |
| Rm62-PI | 578 | CG10279-PI | 147..520 | 222..677 | 393 | 27.8 | Plus |
