BO18660.complete Sequence
2530 bp assembled on 2010-10-20
GenBank Submission: KX797804
> BO18660.complete
GAAGTTATCAGTCGACATGATGGAACTTTTGTCAAACAATTCGGTTCCGC
AACAAATGGCCAGCAGCAATGCGCCGAGCGCCAACAATGTGGCCCACTCC
TCAACGGCCAACGGAAGTGGAGGCGGCAGTGTGAGCAGCAATGCCAGCAA
CTCCTCCGAGCGACTGCTGGCGGGCATCCTGGAGAGCTTTCCCGCCTGGG
ACCTCAACGTGGGACTACTGCCCAACGTGGGCCAGAGCTCACCACCACGC
GCAGACTTCTTTATCAATAACTTCCTGGGCGGCCTGGACACGCATGGCGA
CTTCAGCATTGGACCCATTGGCAGCGGTGCCCGCAGCAATCCGAAGATGT
CGCCAGAGTCATCTAACAACTCGAGCATCAGCTGCGGTTGGTGCGAGGTT
AGTGCTTCAATACGCTGCCTGGAGTGCAACGAGTTCATGTGCAACGACTG
CCTAAGGGAGCATCGCAACAGTCCGCTGTCCTCCAACCACTCGATCGTGT
CCTTGCCCACGCCCATTGGAGCCTCGCCCACGGGTGGCAGCTCGGTAAAT
GCACAGACTCCGCCCAGCGGCAACTTTATCTGCGACATACACAACGAGAT
GTTGCGCTACGTATGTGACTACTGCCGGAAATTGGTGTGTCAGTGCTGCA
CACTGCACGAGCACAAGGAGCACAGCTACGCGTCCATCCAAAGCTTTATG
GTGGGCTCGAAGGAGAAGCTGGAGGGCGCCATTGAGAGCAGCCAGGTGGG
CACGCGCTGCATTAAGAGCAGCATTGACAAAGCGTTGGCCTTCATCCGGC
TTATCGAGCGCAATTGCAGCGAGCTGAGCGATAATATACGCAAGGCATTC
CGTCAGTTTATCATTGCCATCGAGGACCGCGAGCGTTTCCTCCTGGACTT
TGTGGAAAAGCTCCGCCAGCGTCGTCTGGCCATCCTACACGATCAGATGG
CAGGCTTAAAGTCTGCTCTCGCCGGACTCTCCGAAACGTCCGATATGCTT
AGCAAGGTGGCGGACAATGCCTGCAACATGGACCAGATTGAAATTGCCAT
GAAGTTGACCAATGGGCAGAGGCAGATGGAGCAGTTTGCGGGCATATATA
AGGACCTGCAGCCAAAACAGGAAGTCTTTGCCTTCGCACCACCAGATTAC
AGCCTGCTACAGGATATCCGCAACCAGGGTGGCGTTATCCTGGTGGACGA
CAAGAACTTGCCCATCGTCTCTAGCAGCAACGGAATTGTGCCGAGCGTCT
CCAGTGTTAATGCCGTGGCCGCGGCCTCCGTGGGAGTTGTGGGAGGCGTT
GCTGGAGTAGTCGGAGGCGTTGGCGTGTCAAACGGCCTGGACTTGGCCTT
CGGCATGAACATGCCCAACAATCCGCTGAGTGTTGCTTCCTCAAGTGTGC
GACGTCCCCTGTTGCGAGACAATAGCTTCCGGATTCCATCGCCCATAATG
CAACCACGCGGAGGAAGTGCCTGTGGGATGTCCAGTGGGATGTCCAGCGC
TGCTCTTGATTGGGAACTCAATGGACTGCGCAGCTCGCCAGGATTACACT
TCAGTGCGCCGCGAACCACGCAGGCCATTCCGGGATGCATGGATCTGGTC
AAGGTGCGTAACTCGAATGCTCTCTCGCTATCCTTCGCCACCGAGGGCCA
CGAGGACGGACAGGTGAGCCGGCCATGGGGTCTATGCGTTGATAAAATGG
GCCACGTTCTCGTATCGGATCGCCGCAACAATCGCGTCCAGGTCTTCAAT
CCCGATGGCTCCCTAAAGTTCAAATTCGGCCGTAAAGGCGTGGGCAATGG
AGAGTTCGATCTGCCTGCTGGAATCTGTGTTGACGTTGATAATCGCATTA
TTGTGGTCGACAAGGACAATCACCGTGTGCAAATCTTTACCGCCAGCGGC
GTCTTCCTGCTCAAGTTCGGCAGCTACGGCAAGGAGTACGGCCAGTTCCA
GTATCCGTGGGATGTGGCCGTGAACTCGCGCCGCCAAATTGTGGTTACCG
ACTCGCGCAATCATCGCATCCAGCAGTTCGACTCTGAGGGTCGCTTCATC
CGCCAGATAGTGTTCGACAACCATGGGCAAACCAAAGGAATCGCCTCGCC
ACGAGGCGTTTGCTACACGCCGACGGGCAACATCATAGTGTCTGACTTTG
ACAACCACTGCCTCTACCTGATTGATCCAGACATCAACGACATTCTTTCC
GTGAAGGGACATGAGGGCTCGGGCTTCCATGAATTTAATCGACCCTCCGG
CCTGTGCTGTGACGACGAGGGCCGCATTATAGTGGCCGATTCAAAGAATC
AACGCATCCTGGTCTTCAATCAGAACCTGGACTTTATGTGGGATATCGAG
GTGCGACCCTCCATCAATCCCTTGATGCCGCCCACGCTGGACGAGAAAGA
TCGCACTTGCGATGTGGCCATAATGCCAGACGGTCGCATTGTGTTCCTCA
TTGAACTGTCGCCAGACTCCAAGGAAGGGTCAAACCCTTACAAGCGGTTT
GTGCACGTATTCGCAAGCTTTCTAGACCAT
BO18660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wech-RE | 2499 | CG42396-PE | 1..2496 | 17..2512 | 12480 | 100 | Plus |
| wech-RD | 2499 | CG42396-PD | 1..2496 | 17..2512 | 12480 | 100 | Plus |
| wech-RC | 2499 | CG42396-PC | 1..2496 | 17..2512 | 12480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wech-RE | 4316 | CG42396-RE | 300..2795 | 17..2512 | 12480 | 100 | Plus |
| wech-RD | 6021 | CG42396-RD | 224..2719 | 17..2512 | 12480 | 100 | Plus |
| wech-RC | 7593 | CG42396-RC | 554..3049 | 17..2512 | 12480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7483862..7485817 | 2191..236 | 9780 | 100 | Minus |
| 2R | 25286936 | 2R | 7485885..7486105 | 237..17 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 7483397..7483564 | 2512..2345 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 7483647..7483799 | 2344..2192 | 765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 577..663 | 868..781 | 122 | 64.4 | Minus |
BO18660.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:47 Download gff for
BO18660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 345..2840 | 17..2514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:37 Download gff for
BO18660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 554..3049 | 17..2514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:41 Download gff for
BO18660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 554..3049 | 17..2514 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:41 Download gff for
BO18660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7483395..7483564 | 2345..2514 | 98 | <- | Minus |
| 2R | 7483647..7483799 | 2192..2344 | 100 | <- | Minus |
| 2R | 7483862..7485815 | 238..2191 | 100 | <- | Minus |
| 2R | 7485885..7486105 | 17..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:37 Download gff for
BO18660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3370900..3371069 | 2345..2514 | 98 | <- | Minus |
| arm_2R | 3371152..3371304 | 2192..2344 | 100 | <- | Minus |
| arm_2R | 3371367..3373320 | 238..2191 | 100 | <- | Minus |
| arm_2R | 3373390..3373610 | 17..237 | 100 | | Minus |
BO18660.pep Sequence
Translation from 16 to 2530
> BO18660.pep
MMELLSNNSVPQQMASSNAPSANNVAHSSTANGSGGGSVSSNASNSSERL
LAGILESFPAWDLNVGLLPNVGQSSPPRADFFINNFLGGLDTHGDFSIGP
IGSGARSNPKMSPESSNNSSISCGWCEVSASIRCLECNEFMCNDCLREHR
NSPLSSNHSIVSLPTPIGASPTGGSSVNAQTPPSGNFICDIHNEMLRYVC
DYCRKLVCQCCTLHEHKEHSYASIQSFMVGSKEKLEGAIESSQVGTRCIK
SSIDKALAFIRLIERNCSELSDNIRKAFRQFIIAIEDRERFLLDFVEKLR
QRRLAILHDQMAGLKSALAGLSETSDMLSKVADNACNMDQIEIAMKLTNG
QRQMEQFAGIYKDLQPKQEVFAFAPPDYSLLQDIRNQGGVILVDDKNLPI
VSSSNGIVPSVSSVNAVAAASVGVVGGVAGVVGGVGVSNGLDLAFGMNMP
NNPLSVASSSVRRPLLRDNSFRIPSPIMQPRGGSACGMSSGMSSAALDWE
LNGLRSSPGLHFSAPRTTQAIPGCMDLVKVRNSNALSLSFATEGHEDGQV
SRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDLP
AGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDV
AVNSRRQIVVTDSRNHRIQQFDSEGRFIRQIVFDNHGQTKGIASPRGVCY
TPTGNIIVSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDD
EGRIIVADSKNQRILVFNQNLDFMWDIEVRPSINPLMPPTLDEKDRTCDV
AIMPDGRIVFLIELSPDSKEGSNPYKRFVHVFASFLDH
BO18660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wech-PE | 832 | CG42396-PE | 1..832 | 1..832 | 4354 | 100 | Plus |
| wech-PD | 832 | CG42396-PD | 1..832 | 1..832 | 4354 | 100 | Plus |
| wech-PC | 832 | CG42396-PC | 1..832 | 1..832 | 4354 | 100 | Plus |
| wech-PB | 832 | CG42396-PB | 1..832 | 1..832 | 4354 | 100 | Plus |
| wech-PA | 832 | CG42396-PA | 1..832 | 1..832 | 4354 | 100 | Plus |
