BO18672.complete Sequence
3259 bp assembled on 2010-10-20
GenBank Submission: KX796747
> BO18672.complete
GAAGTTATCAGTCGACATGCTAAATTTAGGCAGTGCCAAAGTTGGCGCTC
TGGAGGAGGCCACCTCACCACCCCCCTTCTCCAAGGACGAGAGCTTCCAG
CTGTTGGAGCGGAGCCCCCACAATCCCGCCATATCACCCACCACCACTGT
CCCGCTGGAGCCCCCCTTCACCACCCCCCTAGCTCCCTTCGACATGGAGC
TGATGAAGCGCCACAATCTCCACGAGCGCTTAACGGGAAAGGAGAGCTTC
TGGCGCGGGCGCGACACTTCGCAGAGATTTCTGGACCAGGAGCAATTATC
AGCATCGCGTGAATCACTCGGTGCCGCCGACAAGAGAGCCCGGTTTGCAG
AAAGCAACGCCCCCACGCTCCAACTGCCAGAATCTGCCGAGCCCAGGGCC
AATGGCAAAAGACCCACTGGGAACAGGACCAACCCATCGAATCCAGCCGC
TCCCCTTCTGCCAATGACTGATCCGGATTTTGTGAAGGGCAATGTAGGCG
GCGTCTACGATGATCGCGAGTGCAGCTGCCCCAGGGAGTTCTACCAGCGG
GGCGAGATTAACACATCACTGTTCTTTGAGGACTGCGTCCGGTCCATTGA
CTTTGTCCTGGCCTACAGGATCAATGCGCACGAGCCCACGGAGCTGGAGA
ACACGGAAAAGCGTCGTGTTTTCGAGGCGAATCTCATTAGTCAGGGGCTG
GAGGTCGAGTCCAGTCAGAAGGACCAGATCTGGTTCGTTAAGATCCACGC
TCCTTTGGAGGTCCTGCGACGGTATGCGGAAATTCTTAAGCTGCGCATGC
CCATGAAGGAGATTCCAGGAATGTCCGTGGTCAATCGATCGACCAAAAGC
GTGTTTTCTAGTCTTAAACATGTTTTCCAATTCTTTCTGCGCAACATTTA
TGTGGACGAGGAAATTTTTCCAAAGCGAGCTCATCGATTCACTGCCATTT
ACAGTCGCGATAAGGAGTATCTCTTTGACATCCGACAGGATTGTTTCTTT
ACCACCGCCGTCCGTTCCCGCATCGTTGAGTTCATCCTAGATCGCCAGCG
ATTTCCTGCCAAGAATCAACATGACATGGCCTTCGGTATTGAGCGACTGA
TTGCCGAGGGTGTCTACTCTGCTGCCTATCCACTCCATGATGGTGAAATA
ACCGAGACGGGAACCATGAGAGCTCTGCTGTACAAACATTGGGCCTCTGT
GCCCAAATGGTATCGCTATCAGCCCTTGGATGACATCAAGGAATACTTCG
GTGTCAAAATTGGCTTGTACTTCGCCTGGCTGGGCTACTACACCTACATG
TTGCTGCTGGCCTCAATAGTGGGTGTCATTTGTTTCCTATATTCATGGTT
CTCCCTTAAAAACTATGTGCCTGTGAAAGATATTTGCCAGAGCGGTAATA
CAAACATAACCATGTGTCCTCTTTGTGATTGGTGCAACTTTTGGGACCTG
AAAGAGACCTGCAACTATGCCAAAGTCACGTACCTCATTGACAATCCCAG
CACCGTGTTCTTCGCCGTTTTTATGTCCTTTTGGGCCACCCTATTTCTGG
AGCTGTGGAAGCGGTACTCCGCCGAAATAACGCATCGTTGGGATCTGACG
GGATTCGATGTGCATGAAGAGCATCCGAGGCCACAATATCTGGCGCGTTT
GGAGCACATACCACCGACGAGAGTGGATTATGTGACCAATATAAAAGAGC
CAACGGTTCCCTTTTGGCGTATGAAACTTCCCGCCACCGTGTTCAGCTTT
TCAGTGGTACTGCTCCTAATTGCACTGGCCTTTGTGGCACTGCTGGCAGT
GGTTGTATACCGAATGTCCATGCTGGCCGCCCTTAAAGTGGGTGCTAGTC
CCATGACCACCTCTAGCGCTATTGTCCTAGCCACTGCATCAGCTGCCTTT
GTAAATCTGTGCCTGCTCTATATACTTAATTATATGTACAATCATTTGGC
TGAGTACCTGACAGAGCTGGAAATGTGGCGCACTCAAACTCAGTTCGATG
ACTCGCTTACCCTTAAAATTTATCTGCTGCAGTTTGTAAACTACTACGCC
TCCATTTTTTACATAGCTTTCTTCAAGGGTAAATTCGTTGGTCATCCGGG
AGAGTATAATAAGCTTTTTGACTATCGGCAGGAGGAGTGCTCATCGGGCG
GCTGTTTGACGGAGCTGTGCATCCAGTTAGCCATTATAATGGTTGGCAAG
CAGGCATTCAACACTATTCTTGAAGTGTATCTTCCCATGTTCTGGCGAAA
GGTTTTGGCCATTCAGGTGGGACTGTCGCGACTTTTCAACAACACCCCGA
ATCCAGACAAGGCGAAAGACGAACGCTGGATGCGGGATTTCAAGCTACTG
GATTGGGGTGCCCGAGGTCTGTTTCCCGAGTATTTGGAGATGGTCTTGCA
GTACGGCTTCGTAACCATCTTTGTGGCCGCTTTTCCGCTGGCGCCATTCT
TTGCCCTGCTAAATAATATCCTGGAAATGCGACTGGATGCAAAGAAACTA
TTGACCCACCACAAGCGTCCAGTATCACAGCGAGTTCGAGATATAGGAGT
GTGGTATCGTATCCTGGACTGCATAGGCAAGCTCAGCGTGATCACAAATG
GATTCATCATTGCCTTTACCTCTGACATGATACCGCGGTTGGTGTACCGG
CATTACGTAAACAAGCAAGGCACTCTGGATGGTTACCTCAACTTTACACT
ATCAGAGTTCAAAGTCATTGATTCGCCCACGTTGTATAGCTTAGCTGGCG
ATCTCTCCAACATAACAACGTGCAGATATACGGACTTTCGACTTCCACCA
TCGTCTCCAGAAAAATACACATTGAGCAGCATGTTCTACATAATTCTGGC
CTGCCGATTGGGTTTTGTAGTCGTCTTTGAAAACTTTGTTGCCCTGGTGA
TGATTTTGGTGCGTTGGTGCATTCCGGACATGAGCGTTGAACTGCGTGAC
CAAATCCGACGCGAAGTTTATGTGACCAATGAAATTATCATCGATCAAGA
GGCCCACAGGGCTCGTTTTGAGCGTGCCAAGCGCAGCAGTTCGGTGCTCC
AGACGCCAGTTGACCAGGACATGGATGCTGCCTCCATTCAAGAGCCTAAT
GCCAAGTTCATTAACATTGAAAAGCTCCTTACTGAAAATCTCACACAGAT
CGAAATGGATGCTATTATACACGGCGAAAATCCAATCACAGGAATTTCCG
GTGCCGATTGCTTAGACGAAGTGCACAAAAAACTCAGTGACGCAAGCTTT
CTAGACCAT
BO18672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| subdued-RA | 3228 | CG16718-PA | 1..3225 | 17..3241 | 16125 | 100 | Plus |
| subdued-RE | 2781 | CG16718-PE | 1..2778 | 464..3241 | 13890 | 100 | Plus |
| subdued-RB | 2781 | CG16718-PB | 1..2778 | 464..3241 | 13890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| subdued-RA | 4046 | CG16718-RA | 308..3532 | 17..3241 | 16125 | 100 | Plus |
| subdued-RB | 3531 | CG16718-RB | 129..3017 | 353..3241 | 14445 | 100 | Plus |
| subdued-RE | 3504 | CG16718-RE | 104..2990 | 355..3241 | 14435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19637060..19637618 | 1933..1375 | 2795 | 100 | Minus |
| 3R | 32079331 | 3R | 19636277..19636741 | 2600..2136 | 2325 | 100 | Minus |
| 3R | 32079331 | 3R | 19639026..19639415 | 742..353 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 19642078..19642415 | 354..17 | 1690 | 100 | Minus |
| 3R | 32079331 | 3R | 19633932..19634153 | 3241..3020 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 19636799..19637006 | 2137..1930 | 1025 | 99.5 | Minus |
| 3R | 32079331 | 3R | 19636040..19636215 | 2775..2600 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 19638025..19638194 | 1142..973 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 19638267..19638429 | 972..810 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 19634212..19634350 | 3020..2882 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 19637850..19637971 | 1263..1142 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 19637675..19637792 | 1379..1262 | 575 | 99.2 | Minus |
| 3R | 32079331 | 3R | 19635877..19635985 | 2881..2773 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 19638901..19638971 | 811..741 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:07:59 has no hits.
BO18672.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:37 Download gff for
BO18672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RA | 330..3554 | 17..3243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:17 Download gff for
BO18672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RA | 308..3532 | 17..3243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:06 Download gff for
BO18672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| subdued-RA | 308..3532 | 17..3243 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:06 Download gff for
BO18672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19642078..19642415 | 17..354 | 100 | | Minus |
| 3R | 19633930..19634152 | 3021..3243 | 99 | <- | Minus |
| 3R | 19634212..19634350 | 2882..3020 | 100 | <- | Minus |
| 3R | 19635877..19635982 | 2776..2881 | 100 | <- | Minus |
| 3R | 19636040..19636215 | 2600..2775 | 100 | <- | Minus |
| 3R | 19636278..19636739 | 2138..2599 | 100 | <- | Minus |
| 3R | 19636799..19637002 | 1934..2137 | 100 | <- | Minus |
| 3R | 19637060..19637618 | 1375..1933 | 100 | <- | Minus |
| 3R | 19637680..19637791 | 1263..1374 | 100 | <- | Minus |
| 3R | 19637851..19637971 | 1142..1262 | 100 | <- | Minus |
| 3R | 19638026..19638194 | 973..1141 | 100 | <- | Minus |
| 3R | 19638267..19638427 | 812..972 | 100 | <- | Minus |
| 3R | 19638901..19638969 | 743..811 | 100 | <- | Minus |
| 3R | 19639026..19639413 | 355..742 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:17 Download gff for
BO18672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15459652..15459874 | 3021..3243 | 99 | <- | Minus |
| arm_3R | 15459934..15460072 | 2882..3020 | 100 | <- | Minus |
| arm_3R | 15461599..15461704 | 2776..2881 | 100 | <- | Minus |
| arm_3R | 15461762..15461937 | 2600..2775 | 100 | <- | Minus |
| arm_3R | 15462000..15462461 | 2138..2599 | 100 | <- | Minus |
| arm_3R | 15462521..15462724 | 1934..2137 | 100 | <- | Minus |
| arm_3R | 15462782..15463340 | 1375..1933 | 100 | <- | Minus |
| arm_3R | 15463402..15463513 | 1263..1374 | 100 | <- | Minus |
| arm_3R | 15463573..15463693 | 1142..1262 | 100 | <- | Minus |
| arm_3R | 15463748..15463916 | 973..1141 | 100 | <- | Minus |
| arm_3R | 15463989..15464149 | 812..972 | 100 | <- | Minus |
| arm_3R | 15464623..15464691 | 743..811 | 100 | <- | Minus |
| arm_3R | 15464748..15465135 | 355..742 | 100 | <- | Minus |
| arm_3R | 15467800..15468137 | 17..354 | 100 | | Minus |
BO18672.pep Sequence
Translation from 16 to 3259
> BO18672.pep
MLNLGSAKVGALEEATSPPPFSKDESFQLLERSPHNPAISPTTTVPLEPP
FTTPLAPFDMELMKRHNLHERLTGKESFWRGRDTSQRFLDQEQLSASRES
LGAADKRARFAESNAPTLQLPESAEPRANGKRPTGNRTNPSNPAAPLLPM
TDPDFVKGNVGGVYDDRECSCPREFYQRGEINTSLFFEDCVRSIDFVLAY
RINAHEPTELENTEKRRVFEANLISQGLEVESSQKDQIWFVKIHAPLEVL
RRYAEILKLRMPMKEIPGMSVVNRSTKSVFSSLKHVFQFFLRNIYVDEEI
FPKRAHRFTAIYSRDKEYLFDIRQDCFFTTAVRSRIVEFILDRQRFPAKN
QHDMAFGIERLIAEGVYSAAYPLHDGEITETGTMRALLYKHWASVPKWYR
YQPLDDIKEYFGVKIGLYFAWLGYYTYMLLLASIVGVICFLYSWFSLKNY
VPVKDICQSGNTNITMCPLCDWCNFWDLKETCNYAKVTYLIDNPSTVFFA
VFMSFWATLFLELWKRYSAEITHRWDLTGFDVHEEHPRPQYLARLEHIPP
TRVDYVTNIKEPTVPFWRMKLPATVFSFSVVLLLIALAFVALLAVVVYRM
SMLAALKVGASPMTTSSAIVLATASAAFVNLCLLYILNYMYNHLAEYLTE
LEMWRTQTQFDDSLTLKIYLLQFVNYYASIFYIAFFKGKFVGHPGEYNKL
FDYRQEECSSGGCLTELCIQLAIIMVGKQAFNTILEVYLPMFWRKVLAIQ
VGLSRLFNNTPNPDKAKDERWMRDFKLLDWGARGLFPEYLEMVLQYGFVT
IFVAAFPLAPFFALLNNILEMRLDAKKLLTHHKRPVSQRVRDIGVWYRIL
DCIGKLSVITNGFIIAFTSDMIPRLVYRHYVNKQGTLDGYLNFTLSEFKV
IDSPTLYSLAGDLSNITTCRYTDFRLPPSSPEKYTLSSMFYIILACRLGF
VVVFENFVALVMILVRWCIPDMSVELRDQIRREVYVTNEIIIDQEAHRAR
FERAKRSSSVLQTPVDQDMDAASIQEPNAKFINIEKLLTENLTQIEMDAI
IHGENPITGISGADCLDEVHKKLSDASFLDH
BO18672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| subdued-PA | 1075 | CG16718-PA | 1..1075 | 1..1075 | 5654 | 100 | Plus |
| subdued-PD | 1099 | CG16718-PD | 1..1099 | 1..1075 | 5619 | 97.8 | Plus |
| subdued-PE | 926 | CG16718-PE | 1..926 | 150..1075 | 4878 | 100 | Plus |
| subdued-PB | 926 | CG16718-PB | 1..926 | 150..1075 | 4878 | 100 | Plus |
| subdued-PF | 950 | CG16718-PF | 1..950 | 150..1075 | 4843 | 97.5 | Plus |
