BO18684.complete Sequence
1165 bp assembled on 2009-05-13
GenBank Submission: KX796872
> BO18684.complete
GAAGTTATCAGTCGACATGCCCGAGTACATGTTGTGCCGAATCTGCTTGA
CAGAGGACATCAACTCGGAGGCGATGGCGCCCCTGTTCGATGACAACGAC
GCCCAGTGCCGGGAGCTGGTGCGCAAGATTGAAGAAGTGGGCAGCATAAA
GCTGGTGCCGCTGCAGAACATCCCCAGTATGTTGTGCTACAGCTGCGTGG
AGCGACTGACCAGTGCCCACAAGTTCCGGGAGCTTTGCCAGGAGAGCGAG
CGCACATTTGCCACCAATGTAGTCAAGGCCGAGATGAAGTCGGAGCCAAC
GGACGAGGTGCCGCACGTAGTGGCTGACAACATTGAGTACATCTACGAAT
CGGCCAACGACTTCATCGACGGTGTCGAGGATGACATCGGAATGGAGAAC
ATCATGGAGGAGCCCCTGGAGGATGGTGTCGGGGAAACGTCGCAGGCCTA
CGAGACTAGCACTGTAGTGGACGACCTGGACGAGGATGACTTGCTGGTGC
CGAATAGCACCGATAGCGACTACCAGCCCATCGAGCGCTGCCGCAAAGCT
AAGGTGCGTAAAACGCGGATGACTAAACGTGGACGTGGCCGACCTCGCGG
TGCTAGCTCCGGACACCCACGCAGTTTTAGCGAGGAGCGTCCGCCTGTTC
AAGCTAGCTTCAAATCATCTCCCGAAGTATCCTCCACGAACATTATGTGC
GAAATCTGCGGCAATATCTACTCCAAGCGAGCCGCTCTCAACATTCATAT
GCGTCGTCATATGGCCGAGAAACCATTTAAATGCGAAATATGCAGCAAAT
CCTTCGCGGGTCCATCCGAGCTAAATCGCCATATCCGCGTTCACACGGGC
GAGAAACCATTCTTGTGTAAATATTGCAACCGCTCGTTTGCGGATCGCAG
CTCCAATATTCGTCATGAAAGAACACACACAAACGAGCGACCTTTCACTT
GCTCCACATGCGGCAAGGCATTCTCCTACTCTAACGTGCTAAAAAACCAT
ATGCTCACCCACACGGGCGAGAAGCCTTTTCTCTGTCGAGTCTGCAATAA
GACCTTTTCCCGCAAGCACCAGTTGGATCAGCATTTGGGCACCATGACCC
ACCAACAGACTGTAATACACCACAAAAACGAACGGACGGGGCGATATGCA
AGCTTTCTAGACCAT
BO18684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14711-RA | 1134 | CG14711-PA | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14711-RA | 1319 | CG14711-RA | 73..1203 | 17..1147 | 5640 | 99.9 | Plus |
| CG6808-RA | 3138 | CG6808-RA | 508..1163 | 921..276 | 3095 | 98.5 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1402..1536 | 151..17 | 675 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 1220..1348 | 278..150 | 645 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 339..451 | 1032..920 | 565 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 171..281 | 1143..1033 | 555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11623784..11624294 | 276..786 | 2555 | 100 | Plus |
| 3R | 32079331 | 3R | 11624357..11624491 | 787..921 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11623411..11623545 | 17..151 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 11623599..11623727 | 150..278 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 11624548..11624660 | 920..1032 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 11624718..11624832 | 1033..1147 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:05:56 has no hits.
BO18684.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:12 Download gff for
BO18684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 38..1168 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:53 Download gff for
BO18684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1203 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:26 Download gff for
BO18684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14711-RA | 73..1203 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:26 Download gff for
BO18684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11623786..11624294 | 278..786 | 100 | -> | Plus |
| 3R | 11624357..11624491 | 787..921 | 100 | -> | Plus |
| 3R | 11624550..11624660 | 922..1032 | 100 | -> | Plus |
| 3R | 11624718..11624832 | 1033..1149 | 97 | | Plus |
| 3R | 11623411..11623545 | 17..151 | 100 | -> | Plus |
| 3R | 11623601..11623726 | 152..277 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:53 Download gff for
BO18684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7449133..7449267 | 17..151 | 100 | -> | Plus |
| arm_3R | 7449323..7449448 | 152..277 | 100 | -> | Plus |
| arm_3R | 7449508..7450016 | 278..786 | 100 | -> | Plus |
| arm_3R | 7450079..7450213 | 787..921 | 100 | -> | Plus |
| arm_3R | 7450272..7450382 | 922..1032 | 100 | -> | Plus |
| arm_3R | 7450440..7450554 | 1033..1149 | 97 | | Plus |
BO18684.pep Sequence
Translation from 16 to 1165
> BO18684.pep
MPEYMLCRICLTEDINSEAMAPLFDDNDAQCRELVRKIEEVGSIKLVPLQ
NIPSMLCYSCVERLTSAHKFRELCQESERTFATNVVKAEMKSEPTDEVPH
VVADNIEYIYESANDFIDGVEDDIGMENIMEEPLEDGVGETSQAYETSTV
VDDLDEDDLLVPNSTDSDYQPIERCRKAKVRKTRMTKRGRGRPRGASSGH
PRSFSEERPPVQASFKSSPEVSSTNIMCEICGNIYSKRAALNIHMRRHMA
EKPFKCEICSKSFAGPSELNRHIRVHTGEKPFLCKYCNRSFADRSSNIRH
ERTHTNERPFTCSTCGKAFSYSNVLKNHMLTHTGEKPFLCRVCNKTFSRK
HQLDQHLGTMTHQQTVIHHKNERTGRYASFLDH
BO18684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14711-PA | 377 | CG14711-PA | 1..377 | 1..377 | 2017 | 100 | Plus |
| CG4424-PA | 345 | CG4424-PA | 10..323 | 6..362 | 538 | 35.7 | Plus |
| ranshi-PA | 346 | CG9793-PA | 2..336 | 3..366 | 479 | 31.4 | Plus |
| CG14710-PB | 415 | CG14710-PB | 4..399 | 1..363 | 471 | 29.3 | Plus |
| CG4854-PA | 319 | CG4854-PA | 12..315 | 7..365 | 455 | 30.9 | Plus |
| CG4424-PA | 345 | CG4424-PA | 185..269 | 280..373 | 166 | 34 | Plus |
| ranshi-PA | 346 | CG9793-PA | 194..278 | 280..373 | 154 | 36.2 | Plus |
