Clone BO18689 Report

Search the DGRC for BO18689

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:186
Well:89
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18689.pep: Imported from assembly
Sequenced Size:751

Clone Sequence Records

BO18689.complete Sequence

751 bp assembled on 2009-05-13

> BO18689.complete
GAAGTTATCAGTCGACATGGTCACATACAATACTCTAATACAGAACGAAA
AGAATGAAAATGTGGTCGCCCCGATAAGCCGGCCATTCGCCAGAAAGAGG
AGGACTGAGATTCGCCGCCTGCAGTCCAACAGGCGGTTGAATAAAAAGGT
GTGCAAACACCATTTGGACATTGCCCATTGTACCCAGAAGAAGGCTCCAT
GGCGGAATTGGGCATACCTCATTCTCGCCCTCGCCGCAGGAATTGGCATG
TTATTGCAGTTCACCGACAAGTTGTCCACGGTCAGCGGATTCCTGGAAAG
CTACAAAAACCAGTACCACTCGATCGTCCACAACCAGGACAACTACTGCA
ATCCCTCCCGACGGCTGGGCGACATGGTCCTGCACGCCCGCCACCAGGTA
CTCAACCAGGATCTTGCATTGAACCAGCTAGAACTGGCACTGGACAACAC
CACCAATGAGGCAATCGTCTTGGTGGGCACCTCTGGCGTAGGCAAGAGCC
ACACTGCGCGAATCTTGCGCGAAACGTTTCCCTGGCCCGAGAACGTGAAT
ACACTCTCCTGGACCGGCAGTTCTTCTTTGGGCCGAGTGAAGAGCATGCT
ATCCGGCCTGACATATTGCGGACAGAATATGATCTTGATTGATAACATGA
CGCCGAAGGATGCACACTTCGTGCCTATCATTAACGAAATGATAAGTGAG
GGCGAAAAGAGCGCCAACCACACTGAGCATCCGGCAAGCTTTCTAGACCA
T

BO18689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-RA 1056 CG4880-PA 1..717 17..733 3585 100 Plus
CG4880-RB 993 CG4880-PB 1..382 17..398 1910 100 Plus
CG4880-RB 993 CG4880-PB 380..654 459..733 1375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-RA 1700 CG4880-RA 150..866 17..733 3585 100 Plus
CG4880-RB 1505 CG4880-RB 150..531 17..398 1910 100 Plus
CG4880-RB 1505 CG4880-RB 529..803 459..733 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16886967..16887411 17..461 2225 100 Plus
X 23542271 X 16887621..16887895 459..733 1375 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:29:19 has no hits.

BO18689.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:59 Download gff for BO18689.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 138..855 17..735 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:38 Download gff for BO18689.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 150..867 17..735 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:36 Download gff for BO18689.complete
Subject Subject Range Query Range Percent Splice Strand
CG4880-RA 150..867 17..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:36 Download gff for BO18689.complete
Subject Subject Range Query Range Percent Splice Strand
X 16886967..16887410 17..460 100 -> Plus
X 16887623..16887896 461..735 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:38 Download gff for BO18689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16781000..16781443 17..460 100 -> Plus
arm_X 16781656..16781929 461..735 99   Plus

BO18689.pep Sequence

Translation from 16 to 751

> BO18689.pep
MVTYNTLIQNEKNENVVAPISRPFARKRRTEIRRLQSNRRLNKKVCKHHL
DIAHCTQKKAPWRNWAYLILALAAGIGMLLQFTDKLSTVSGFLESYKNQY
HSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEAI
VLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTY
CGQNMILIDNMTPKDAHFVPIINEMISEGEKSANHTEHPASFLDH

BO18689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4880-PA 351 CG4880-PA 1..239 1..239 1258 100 Plus
CG4880-PB 330 CG4880-PB 1..218 1..239 1124 91.2 Plus
CG7557-PB 336 CG7557-PB 104..243 104..234 224 36.4 Plus
CG7557-PA 355 CG7557-PA 123..262 104..234 224 36.4 Plus