BO18746.complete Sequence
2380 bp assembled on 2010-10-20
GenBank Submission: KX795430
> BO18746.complete
GAAGTTATCAGTCGACATGGGTGCAACCAAGAACCTGGACTTGATAGGCA
CCATCGAAGACGATGCCGAGGTGGAGAACTTGTCGGAGGACTCCGATGCG
GAGGTCGAGTACCAACCCACAAAACTGAGACACAAGAAGGTGACGGAGTT
TGAGAAGGGCTTCGAGTTCGTGTCCTCAGTGAAGGAGTACAACCAGGACA
CTTGGGACGACCTGATGAAGTACGTGAAGCGAAAGGCGCGCACAAAGACC
GACGACAAGATCGCCGCCCGGCTGCAAAAGCGGGGTGGCGCCGAAGCTGT
GGCCGCGGAGCAGAGCGATGGAAGTGAGATAGATCTCTCCGAGGACGAAT
TGAAGCATGACAACCTGCGGCTAAGGGAGAAGAAGGAATCCAAAAAAAAG
AAGAAGAAGGCTGGAGAGGAGGATGAAGAGGACGAGGGCGAGAAGATGCA
GTTCGCCGACACTGTAGAGGCGAACGAGCAGATCACTTCCTTCTACCAAA
TGAACCTTTCACGTCCCCTGATGCGTGCCATCGGTGTGCTGGGGTACATA
TATCCTACGCCGATCCAGGCCTCTACGATTCCTGTGGCTTTGCTAGGTCG
CGATATCTGCGGCTGTGCTGCCACGGGAACGGGCAAAACTGCTGCTTATA
TGTTGCCTACTCTAGAACGTTTGCTGTATCGTCCTCTTAACAACAAGGCC
ATCACCAGGGTACTGGTTCTTGTGCCCACTCGTGAGCTGGGCGCCCAGGT
TTACCAGGTGACAAAGCAATTGTGCCAGTTCACCACTATTGATGTGGGTC
TGGCAATTGGTGGTCTGGATGTGAAGGCTCAGGAGGCAGTACTTCGCCAG
AATCCCGACATTGTCATTGCAACGCCAGGTCGTCTAATCGATCACATTAA
AAATACGCCCAGTTTTACATTGGATTCCATTGAGGTTCTCATTCTGGACG
AGGCCGATCGTATGCTGGACGAGTACTTCGCCGAACAGATGAAGGAGATC
ATCAACTCCTGCTGTAAGACACGTCAGACCATGTTGTTCTCCGCCACAAT
GAGCGAGCAGGTCAAAGATCTGGCCGCCGTATCGCTGGACAAGCCCATCA
AGGTGTTCGTCAACAACAACCAGCAAGTGGCCTTCAATCTGCGTCAGGAA
TTTATTCGCATACGTGAGGATAAGGAGGGCGACCGTGAACCCATTCTGGC
TAGTTTGATTTGCAGGACGTTCCATGATCATTGCATGGTATTTGTGCAAA
CCAAAAAGCAGGCCCATCGACTGCACATTTTATTGGGTCTCTTGGGCGTC
CGGGCCGGCGAACTGCATGGCAATCTCACCCAGCAACAGCGTCTGGAGTC
CCTCAAGAAGTTCAAGGAGGAGCAGATTGATGTGCTTATCGCCACAGATG
TAGCTGCTCGTGGTCTCGATATTGTGGGCGTAAAAACGGTAATCAACTTT
GTGATGCCCATCACCACAGAGCACTACATCCATCGAGTGGGTCGTACGGC
TCGAGCTGGGCGTGCTGGTATATCCGTTTCCCTGGCCGGTGAAAAGGAGC
GCAAGATCGTTAAGGACATTATCAAGAATGCGGAGAGTACCATTAAGAAT
CGTATTATTCCGCCAGAGATTATTGAAAAATATCGCAACAAACTTACAAG
CTTGGAGCCAGAGATTCAAAACATTCTGGACGAAGAGCAGGCTGAACGGC
AGCTAGCCAAAACGGAGCAACAGCTCTCCAAAACGGAGCGAAAGCTGCTG
GGACAGACCAACGAGCGACGTGGTTGGTTCCAGACGAAACAGCAACGCGA
GGCGGAGAAGGATCGCTTAGCGTTGACAACCGGCGACGAGGATAAAGCAT
CTGGTGGAAAGGGTAAGGGAAAAACGGCCGGAAAGCGTAAGCGACCCGAG
TACGGAGGCGATGGCGAGGATGGACCACCGGTCAAGGATCTCGAGGCAAA
GCGCAACAAGAAGAAGAAGGAGGAGCCTCGAAAGAAGACACCGGAGCAGC
TGGCCAAAGAGCGAGCCATGAAGGAGATCGAGAAGGTGTCCCTTGTGCGC
GCCAAGATGGCCAAGCTGCGCAAACGTCCGGGCAAACTAGGAGCCGCCAC
CGAAGTTCACAGAAGCGGTGCCTCCGACGGCAAACCCAAGCGACGCGGCG
GTCAGTCGGCATTTACTAACGACTTGACCGATGTAAGTCGTGGCGGAGCT
CTGCGTCTAAGGTCCGAGGCCAATCGGCACAAAAAGATGACCAAGATCGC
TGCTAAGAAAAAGGCGAGCAGTGTGAAGCTGACAAACAAGGCGGGAAAGA
ATAAGTTCAACAAGGGCAAGAACTTCGGAGGACCTCGTCACGCCAAGAAG
GATAAAAAGAAGGCAAGCTTTCTAGACCAT
BO18746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rs1-RB | 2349 | CG2173-PB | 1..2346 | 17..2362 | 11730 | 100 | Plus |
| Rs1-RA | 2349 | CG2173-PA | 1..2346 | 17..2362 | 11730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rs1-RB | 2670 | CG2173-RB | 220..2565 | 17..2362 | 11730 | 100 | Plus |
| Rs1-RA | 2527 | CG2173-RA | 77..2422 | 17..2362 | 11730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8165105..8165933 | 108..936 | 4145 | 100 | Plus |
| 2R | 25286936 | 2R | 8166114..8166848 | 933..1667 | 3675 | 100 | Plus |
| 2R | 25286936 | 2R | 8166909..8167454 | 1668..2213 | 2730 | 100 | Plus |
| 2R | 25286936 | 2R | 8167512..8167664 | 2210..2362 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 8164956..8165048 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:20:51 has no hits.
BO18746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:27 Download gff for
BO18746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 72..2406 | 17..2351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:59 Download gff for
BO18746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 77..2411 | 17..2351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:26 Download gff for
BO18746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rs1-RA | 77..2411 | 17..2351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:26 Download gff for
BO18746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8164956..8165048 | 17..109 | 100 | -> | Plus |
| 2R | 8165107..8165931 | 110..934 | 100 | -> | Plus |
| 2R | 8166116..8166848 | 935..1667 | 100 | -> | Plus |
| 2R | 8166909..8167452 | 1668..2211 | 100 | -> | Plus |
| 2R | 8167514..8167653 | 2212..2351 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:59 Download gff for
BO18746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4052461..4052553 | 17..109 | 100 | -> | Plus |
| arm_2R | 4052612..4053436 | 110..934 | 100 | -> | Plus |
| arm_2R | 4053621..4054353 | 935..1667 | 100 | -> | Plus |
| arm_2R | 4054414..4054957 | 1668..2211 | 100 | -> | Plus |
| arm_2R | 4055019..4055158 | 2212..2351 | 100 | | Plus |
BO18746.pep Sequence
Translation from 16 to 2380
> BO18746.pep
MGATKNLDLIGTIEDDAEVENLSEDSDAEVEYQPTKLRHKKVTEFEKGFE
FVSSVKEYNQDTWDDLMKYVKRKARTKTDDKIAARLQKRGGAEAVAAEQS
DGSEIDLSEDELKHDNLRLREKKESKKKKKKAGEEDEEDEGEKMQFADTV
EANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGC
AATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTK
QLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSF
TLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVK
DLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR
TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFK
EEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRA
GISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEI
QNILDEEQAERQLAKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKDR
LALTTGDEDKASGGKGKGKTAGKRKRPEYGGDGEDGPPVKDLEAKRNKKK
KEEPRKKTPEQLAKERAMKEIEKVSLVRAKMAKLRKRPGKLGAATEVHRS
GASDGKPKRRGGQSAFTNDLTDVSRGGALRLRSEANRHKKMTKIAAKKKA
SSVKLTNKAGKNKFNKGKNFGGPRHAKKDKKKASFLDH
BO18746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rs1-PB | 782 | CG2173-PB | 1..782 | 1..782 | 3959 | 100 | Plus |
| Rs1-PA | 782 | CG2173-PA | 1..782 | 1..782 | 3959 | 100 | Plus |
| CG9253-PA | 507 | CG9253-PA | 6..415 | 99..518 | 665 | 36.7 | Plus |
| Dbp45A-PA | 521 | CG12759-PA | 4..521 | 154..667 | 557 | 30.9 | Plus |
| pit-PC | 680 | CG6375-PC | 60..588 | 24..565 | 549 | 30.1 | Plus |
